assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002993265.1_ASM299326v1	NZ_CP027430	Escherichia coli strain AS19-RrmA- chromosome, complete genome	1	419474-419565	1	CRISPRCasFinder	no		c2c9_V-U4,cas3,RT,DinG,DEDDh,csa3	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,RT,DinG,DEDDh,csa3	NA|70aa|up_9|NZ_CP027430.1_408549_408759_-,NA	NA|70aa|up_9|NZ_CP027430.1_408549_408759_-	NA	NA|1321aa|up_8|NZ_CP027430.1_408813_412776_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP027430.1_412815_413454_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP027430.1_413741_414833_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP027430.1_414832_415525_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP027430.1_415536_415923_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP027430.1_415930_416731_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP027430.1_416740_417331_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP027430.1_417341_417836_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP027430.1_417856_419185_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP027430.1_419988_420585_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP027430.1_420605_420833_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP027430.1_420870_422112_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|420aa|down_3|NZ_CP027430.1_422394_423654_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP027430.1_423914_424835_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP027430.1_424834_425140_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP027430.1_425291_425891_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP027430.1_425887_428434_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP027430.1_428433_429606_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP027430.1_429735_430428_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_002993265.1_ASM299326v1	NZ_CP027430	Escherichia coli strain AS19-RrmA- chromosome, complete genome	2	759879-760023	2	CRISPRCasFinder	no		c2c9_V-U4,cas3,RT,DinG,DEDDh,csa3	Orphan	CCTGATAAGACACGTTAAACGTCACATCAGGCATCGCTTGTCGGATGCGGCGCT	54	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,RT,DinG,DEDDh,csa3	NA|76aa|up_5|NZ_CP027430.1_751938_752166_-,NA|36aa|down_6|NZ_CP027430.1_768111_768219_+	NA|98aa|up_9|NZ_CP027430.1_748199_748493_-	PRK10588, PRK10588, hypothetical protein; Provisional	NA|38aa|up_8|NZ_CP027430.1_748492_748606_-	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown]	NA|380aa|up_7|NZ_CP027430.1_748620_749760_-	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II	NA|523aa|up_6|NZ_CP027430.1_749775_751344_-	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA	NA|76aa|up_5|NZ_CP027430.1_751938_752166_-	NA	NA|878aa|up_4|NZ_CP027430.1_752190_754824_-	PRK09819, PRK09819, mannosylglycerate hydrolase	NA|659aa|up_3|NZ_CP027430.1_754841_756818_-	PRK09765, PRK09765, PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional	NA|241aa|up_2|NZ_CP027430.1_756926_757649_+	PRK09764, PRK09764, GntR family transcriptional regulator	NA|290aa|up_1|NZ_CP027430.1_757752_758622_-	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|389aa|up_0|NZ_CP027430.1_758621_759788_-	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|406aa|down_0|NZ_CP027430.1_760153_761371_-	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|934aa|down_1|NZ_CP027430.1_761385_764187_-	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|239aa|down_2|NZ_CP027430.1_764487_765204_-	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|589aa|down_3|NZ_CP027430.1_765219_766986_-	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|116aa|down_4|NZ_CP027430.1_766985_767333_-	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|130aa|down_5|NZ_CP027430.1_767326_767716_-	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|36aa|down_6|NZ_CP027430.1_768111_768219_+	NA	NA|428aa|down_7|NZ_CP027430.1_768424_769708_+	PRK05614, gltA, citrate synthase	NA|189aa|down_8|NZ_CP027430.1_770097_770664_+	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|817aa|down_9|NZ_CP027430.1_770723_773174_+	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]
GCF_002993265.1_ASM299326v1	NZ_CP027430	Escherichia coli strain AS19-RrmA- chromosome, complete genome	3	1121283-1121427	3	CRISPRCasFinder	no		c2c9_V-U4,cas3,RT,DinG,DEDDh,csa3	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,RT,DinG,DEDDh,csa3	NA,NA|28aa|down_2|NZ_CP027430.1_1124249_1124333_-	NA|357aa|up_9|NZ_CP027430.1_1106421_1107492_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP027430.1_1107584_1108166_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP027430.1_1108170_1109988_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP027430.1_1110143_1111517_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP027430.1_1111592_1112912_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP027430.1_1113318_1114614_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP027430.1_1114671_1115361_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP027430.1_1115550_1116753_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP027430.1_1116749_1119896_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP027430.1_1120021_1121206_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP027430.1_1121450_1122359_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP027430.1_1122483_1123395_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP027430.1_1124249_1124333_-	NA	NA|95aa|down_3|NZ_CP027430.1_1124818_1125103_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP027430.1_1125174_1125852_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP027430.1_1126109_1126301_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP027430.1_1126350_1126875_-	PRK03731, aroL, shikimate kinase AroL	NA|153aa|down_7|NZ_CP027430.1_1127057_1127516_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP027430.1_1127635_1128445_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP027430.1_1128461_1129577_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_002993265.1_ASM299326v1	NZ_CP027430	Escherichia coli strain AS19-RrmA- chromosome, complete genome	4	1247816-1247912	4	CRISPRCasFinder	no	DEDDh	c2c9_V-U4,cas3,RT,DinG,DEDDh,csa3	Unclear	GCCAGCGTCGCATCAGGCATCCGCGCA	27	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,RT,DinG,DEDDh,csa3	NA,NA	NA|153aa|up_9|NZ_CP027430.1_1239694_1240153_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_8|NZ_CP027430.1_1240413_1241871_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|179aa|up_7|NZ_CP027430.1_1241927_1242464_-	PRK08179, prfH, peptide chain release factor-like protein; Reviewed	NA|89aa|up_6|NZ_CP027430.1_1242396_1242663_-	PRK09588, PRK09588, hypothetical protein; Reviewed	NA|151aa|up_5|NZ_CP027430.1_1242896_1243349_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|133aa|up_4|NZ_CP027430.1_1243358_1243757_-	PRK09885, PRK09885, type II toxin-antitoxin system YafO family toxin	NA|98aa|up_3|NZ_CP027430.1_1243759_1244053_-	PRK09778, PRK09778, type I toxin-antitoxin system antitoxin YafN	NA|352aa|up_2|NZ_CP027430.1_1244104_1245160_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|257aa|up_1|NZ_CP027430.1_1245230_1246001_-	PRK06778, PRK06778, hypothetical protein; Validated	NA|580aa|up_0|NZ_CP027430.1_1245960_1247700_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|166aa|down_0|NZ_CP027430.1_1247915_1248413_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|258aa|down_1|NZ_CP027430.1_1248588_1249362_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|87aa|down_2|NZ_CP027430.1_1249547_1249808_+	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair]	NA|93aa|down_3|NZ_CP027430.1_1249810_1250089_+	COG3041, COG3041, Uncharacterized protein conserved in bacteria [Function unknown]	NA|247aa|down_4|NZ_CP027430.1_1250244_1250985_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_5|NZ_CP027430.1_1250955_1251723_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_6|NZ_CP027430.1_1251928_1252507_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_7|NZ_CP027430.1_1252746_1255191_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_8|NZ_CP027430.1_1255233_1255707_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_9|NZ_CP027430.1_1255860_1256631_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional
GCF_002993265.1_ASM299326v1	NZ_CP027430	Escherichia coli strain AS19-RrmA- chromosome, complete genome	5	1461608-1461749	5	CRISPRCasFinder	no		c2c9_V-U4,cas3,RT,DinG,DEDDh,csa3	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,RT,DinG,DEDDh,csa3	NA,NA	NA|444aa|up_9|NZ_CP027430.1_1449211_1450543_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_8|NZ_CP027430.1_1450599_1450887_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_7|NZ_CP027430.1_1450883_1452170_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_6|NZ_CP027430.1_1452220_1453162_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_5|NZ_CP027430.1_1453176_1453947_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_4|NZ_CP027430.1_1454420_1455935_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_3|NZ_CP027430.1_1455965_1457108_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|518aa|up_2|NZ_CP027430.1_1458526_1460080_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_CP027430.1_1460188_1460974_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_CP027430.1_1460979_1461570_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_CP027430.1_1461778_1462174_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_CP027430.1_1462435_1465657_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_CP027430.1_1465674_1466823_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_CP027430.1_1467278_1468100_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|NZ_CP027430.1_1468266_1469181_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|NZ_CP027430.1_1469246_1470197_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|NZ_CP027430.1_1470198_1470648_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|NZ_CP027430.1_1470772_1471267_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|NZ_CP027430.1_1471266_1474083_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|NZ_CP027430.1_1474125_1475067_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
GCF_002993265.1_ASM299326v1	NZ_CP027430	Escherichia coli strain AS19-RrmA- chromosome, complete genome	6	1662526-1662675	6	CRISPRCasFinder	no		c2c9_V-U4,cas3,RT,DinG,DEDDh,csa3	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,RT,DinG,DEDDh,csa3	NA,NA|551aa|down_6|NZ_CP027430.1_1669789_1671442_-	NA|340aa|up_9|NZ_CP027430.1_1650718_1651738_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NZ_CP027430.1_1651741_1652305_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NZ_CP027430.1_1652521_1653553_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NZ_CP027430.1_1653576_1654341_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NZ_CP027430.1_1654403_1655723_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NZ_CP027430.1_1655789_1656788_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|NZ_CP027430.1_1656865_1658368_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP027430.1_1658528_1659611_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP027430.1_1659610_1660711_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP027430.1_1660977_1662489_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP027430.1_1662842_1663286_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP027430.1_1663285_1666141_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|NZ_CP027430.1_1666196_1667393_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP027430.1_1667585_1668089_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP027430.1_1668134_1668551_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP027430.1_1668712_1669717_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|551aa|down_6|NZ_CP027430.1_1669789_1671442_-	NA	NA|151aa|down_7|NZ_CP027430.1_1671564_1672017_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_8|NZ_CP027430.1_1672161_1672755_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_9|NZ_CP027430.1_1672825_1673539_+	PRK12742, PRK12742, SDR family oxidoreductase
GCF_002993265.1_ASM299326v1	NZ_CP027430	Escherichia coli strain AS19-RrmA- chromosome, complete genome	7	2799930-2800067	7	CRISPRCasFinder	no		c2c9_V-U4,cas3,RT,DinG,DEDDh,csa3	Orphan	CAGCCGTTGCCTGATGCGACGCTGTGCGTCTTATCAGGCCTACAAAC	47	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,RT,DinG,DEDDh,csa3	NA,NA	NA|450aa|up_9|NZ_CP027430.1_2785013_2786363_-	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|157aa|up_8|NZ_CP027430.1_2786373_2786844_-	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|325aa|up_7|NZ_CP027430.1_2787821_2788796_-	cd08288, MDR_yhdh, Yhdh putative quinone oxidoreductases	NA|647aa|up_6|NZ_CP027430.1_2788947_2790888_+	PRK11059, PRK11059, regulatory protein CsrD; Provisional	NA|348aa|up_5|NZ_CP027430.1_2791192_2792236_+	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional	NA|368aa|up_4|NZ_CP027430.1_2792301_2793405_+	TIGR00219, Cell_shape-determining_protein_MreC, rod shape-determining protein MreC	NA|163aa|up_3|NZ_CP027430.1_2793404_2793893_+	PRK11060, PRK11060, rod shape-determining protein MreD; Provisional	NA|198aa|up_2|NZ_CP027430.1_2793901_2794495_+	PRK00032, PRK00032, septum formation inhibitor Maf	NA|490aa|up_1|NZ_CP027430.1_2794484_2795954_+	PRK11712, PRK11712, ribonuclease G; Provisional	NA|1267aa|up_0|NZ_CP027430.1_2796021_2799822_+	PRK10899, PRK10899, AsmA2 domain-containing protein	NA|482aa|down_0|NZ_CP027430.1_2800160_2801606_+	PRK10735, tldD, protease TldD; Provisional	NA|310aa|down_1|NZ_CP027430.1_2801733_2802663_-	PRK10632, PRK10632, HTH-type transcriptional activator AaeR	NA|68aa|down_2|NZ_CP027430.1_2802845_2803049_+	PRK11594, PRK11594, efflux system membrane protein; Provisional	NA|311aa|down_3|NZ_CP027430.1_2803056_2803989_+	PRK10559, PRK10559, p-hydroxybenzoic acid efflux pump subunit AaeA	NA|656aa|down_4|NZ_CP027430.1_2803994_2805962_+	PRK10631, PRK10631, p-hydroxybenzoic acid efflux subunit AaeB; Provisional	NA|91aa|down_5|NZ_CP027430.1_2806053_2806326_+	COG2732, COG2732, Barstar, RNAse (barnase) inhibitor [Transcription]	NA|88aa|down_6|NZ_CP027430.1_2806381_2806645_-	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|157aa|down_7|NZ_CP027430.1_2807009_2807480_-	PRK05066, PRK05066, transcriptional regulator ArgR	NA|313aa|down_8|NZ_CP027430.1_2807914_2808853_+	PRK05086, PRK05086, malate dehydrogenase; Provisional	NA|356aa|down_9|NZ_CP027430.1_2808914_2809982_-	PRK10898, PRK10898, serine endoprotease DegS
GCF_002993265.1_ASM299326v1	NZ_CP027430	Escherichia coli strain AS19-RrmA- chromosome, complete genome	8	3320524-3321350	1,8,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no		c2c9_V-U4,cas3,RT,DinG,DEDDh,csa3	Orphan	TAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGA,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	34,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E	9,13,13,9	13	Orphan	c2c9_V-U4,cas3,RT,DinG,DEDDh,csa3	NA|47aa|up_1|NZ_CP027430.1_3319237_3319378_-,NA	NA|434aa|up_9|NZ_CP027430.1_3309934_3311236_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP027430.1_3311283_3313518_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP027430.1_3313595_3313844_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP027430.1_3313843_3314179_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP027430.1_3314249_3315041_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP027430.1_3315268_3316906_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP027430.1_3316993_3318292_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP027430.1_3318351_3319224_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP027430.1_3319237_3319378_-	NA	NA|224aa|up_0|NZ_CP027430.1_3319516_3320188_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP027430.1_3321988_3323467_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP027430.1_3323493_3324771_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP027430.1_3325089_3325875_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP027430.1_3325944_3327399_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP027430.1_3327492_3328830_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP027430.1_3328807_3329587_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP027430.1_3329583_3330444_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP027430.1_3330591_3331167_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP027430.1_3331183_3331444_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP027430.1_3331434_3332706_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_002993265.1_ASM299326v1	NZ_CP027430	Escherichia coli strain AS19-RrmA- chromosome, complete genome	9	3339584-3339856	3,9,2	PILER-CR,CRISPRCasFinder,CRT	no		c2c9_V-U4,cas3,RT,DinG,DEDDh,csa3	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,4,4	4	Orphan	c2c9_V-U4,cas3,RT,DinG,DEDDh,csa3	NA,NA	NA|287aa|up_9|NZ_CP027430.1_3329583_3330444_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|up_8|NZ_CP027430.1_3330591_3331167_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|up_7|NZ_CP027430.1_3331183_3331444_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|up_6|NZ_CP027430.1_3331434_3332706_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|up_5|NZ_CP027430.1_3332783_3333149_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_4|NZ_CP027430.1_3333464_3335264_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_3|NZ_CP027430.1_3335263_3336976_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_2|NZ_CP027430.1_3337049_3337784_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_1|NZ_CP027430.1_3338048_3338201_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_0|NZ_CP027430.1_3338393_3339506_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|346aa|down_0|NZ_CP027430.1_3339937_3340975_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP027430.1_3341226_3342135_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP027430.1_3342136_3343564_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP027430.1_3343563_3344169_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP027430.1_3344218_3344542_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP027430.1_3344735_3345047_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP027430.1_3345065_3345776_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP027430.1_3345775_3346255_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP027430.1_3346251_3347301_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP027430.1_3347281_3348043_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002993265.1_ASM299326v1	NZ_CP027430	Escherichia coli strain AS19-RrmA- chromosome, complete genome	10	3817379-3817494	10	CRISPRCasFinder	no		c2c9_V-U4,cas3,RT,DinG,DEDDh,csa3	Orphan	GAGCCGTAGGCCGGATAAGGCGTTCACGC	29	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,RT,DinG,DEDDh,csa3	NA,NA	NA|268aa|up_9|NZ_CP027430.1_3806005_3806809_+	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	NA|301aa|up_8|NZ_CP027430.1_3806849_3807752_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP027430.1_3807944_3809135_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP027430.1_3809131_3810391_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP027430.1_3810380_3812009_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP027430.1_3812281_3813640_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP027430.1_3813644_3814721_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP027430.1_3815183_3815834_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP027430.1_3815887_3816142_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP027430.1_3816141_3817272_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP027430.1_3817513_3819799_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP027430.1_3820494_3824247_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP027430.1_3824374_3825097_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP027430.1_3825243_3827871_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP027430.1_3828019_3829708_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP027430.1_3829704_3830328_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP027430.1_3830471_3834866_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP027430.1_3834866_3836516_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP027430.1_3836520_3837297_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP027430.1_3837370_3838555_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_002993265.1_ASM299326v1	NZ_CP027430	Escherichia coli strain AS19-RrmA- chromosome, complete genome	11	4387950-4388073	11	CRISPRCasFinder	no	DEDDh	c2c9_V-U4,cas3,RT,DinG,DEDDh,csa3	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,RT,DinG,DEDDh,csa3	NA,NA|30aa|down_7|NZ_CP027430.1_4396969_4397059_+	NA|471aa|up_9|NZ_CP027430.1_4377404_4378817_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP027430.1_4379373_4379583_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP027430.1_4380037_4380664_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP027430.1_4380684_4382787_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP027430.1_4382790_4383438_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP027430.1_4383501_4384170_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP027430.1_4384166_4384952_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP027430.1_4384955_4385768_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP027430.1_4385779_4387384_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP027430.1_4387509_4387815_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP027430.1_4388387_4389644_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP027430.1_4389684_4391058_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP027430.1_4391272_4391914_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP027430.1_4391953_4393102_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP027430.1_4393392_4394604_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP027430.1_4394716_4395649_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP027430.1_4395645_4396671_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP027430.1_4396969_4397059_+	NA	NA|390aa|down_8|NZ_CP027430.1_4397224_4398394_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP027430.1_4398628_4399210_-	PRK10543, PRK10543, superoxide dismutase [Fe]
