The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP024867	Vibrio cholerae strain A1552 chromosome I, complete sequence	3015093	275451	284069	3015093	integrase,transposase,tRNA	Vibrio_phage(33.33%)	7	276531:276543	283178:283190
WP_100068541.1|275451_276628_+|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	65.1	8.6e-118
276531:276543	attL	AGCCAGCTCAGGC	NA	NA	NA	NA
WP_001129565.1|276664_277906_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1V0E8G8	Vibrio_phage	47.3	9.1e-110
WP_000372618.1|278291_280169_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	32.9	1.5e-34
WP_000907210.1|280267_282031_-	DNA primase	NA	A0A1S5RG58	Helicobacter_phage	30.7	1.1e-44
WP_001173892.1|282120_282564_-	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	49.3	3.7e-29
WP_001145625.1|282593_282809_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_001220122.1|283049_284069_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	57.4	2.6e-107
283178:283190	attR	GCCTGAGCTGGCT	NA	NA	NA	NA
>prophage 2
NZ_CP024867	Vibrio cholerae strain A1552 chromosome I, complete sequence	3015093	290238	297456	3015093		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_000698379.1|290238_290991_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	53.3	8.0e-69
WP_000002982.1|290983_291610_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
WP_053036405.1|291609_292539_+	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.7e-05
WP_000116737.1|292612_293620_+	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
WP_001894770.1|293712_296301_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	2.2e-33
WP_001279365.1|296568_297456_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	4.1e-56
>prophage 3
NZ_CP024867	Vibrio cholerae strain A1552 chromosome I, complete sequence	3015093	529079	536272	3015093		Faustovirus(16.67%)	9	NA	NA
WP_000775253.1|529079_530294_+	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.5	1.1e-32
WP_000331703.1|530330_530714_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_000301571.1|530774_531098_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_001105747.1|531146_531662_+	co-chaperone HscB	NA	NA	NA	NA	NA
WP_001196560.1|531685_533536_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	5.3e-106
WP_001124187.1|533549_533888_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_000872176.1|533936_534131_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_000107237.1|534350_535640_+	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.3	1.7e-34
WP_001162850.1|535843_536272_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
>prophage 4
NZ_CP024867	Vibrio cholerae strain A1552 chromosome I, complete sequence	3015093	1275275	1361892	3015093	coat,protease,head,terminase,tail,capsid,transposase,portal	Vibrio_phage(45.71%)	74	NA	NA
WP_149591715.1|1275275_1277381_-	RTX toxin T1SS ABC transporter subunit RtxB	NA	W8CYL7	Bacillus_phage	27.1	4.9e-39
WP_001906284.1|1277807_1278155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001881196.1|1278180_1278642_+	RTX toxin-activating lysine-acyltransferase RtxC	NA	NA	NA	NA	NA
WP_000517826.1|1278665_1292303_+	MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	NA	B3Y8K3	Vibrio_virus	100.0	8.4e-07
WP_000053920.1|1292670_1292895_-	RstC protein	NA	U5TMI6	Satellite_phage	100.0	1.1e-34
WP_001911551.1|1292988_1293339_-	hypothetical protein	NA	U5TMH5	Satellite_phage	100.0	1.0e-63
WP_000743997.1|1293340_1294420_-	replication initiation factor domain-containing protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_000693566.1|1294545_1294884_+	helix-turn-helix transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
WP_000593522.1|1295496_1295871_-	cholera enterotoxin binding subunit CtxB	NA	Q77DH7	Vibrio_virus	100.0	7.8e-65
WP_001881225.1|1295867_1296644_-	cholera enterotoxin catalytic subunit CtxA	NA	A0A142I6Y0	Vibrio_phage	100.0	1.3e-151
WP_000021616.1|1296742_1297942_-	zonula occludens toxin ZOT	NA	A0A142I6Z1	Vibrio_phage	100.0	5.3e-240
WP_000979342.1|1297938_1298232_-	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_001268534.1|1298228_1299416_-|coat	minor coat protein pIII	coat	A0A142I701	Vibrio_phage	100.0	1.4e-200
WP_000493022.1|1299522_1299771_-	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_000842207.1|1299906_1300263_-	hypothetical protein	NA	A0A0N9HJ67	Vibrio_phage	100.0	9.7e-65
WP_000743997.1|1300264_1301344_-	replication initiation factor domain-containing protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_000693566.1|1301469_1301808_+	helix-turn-helix transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
WP_000170634.1|1302297_1302882_-	DNA-binding protein	NA	E3U9I9	Vibrio_phage	100.0	6.4e-114
WP_001161489.1|1302874_1303042_-	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
WP_001052672.1|1303119_1303812_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000512956.1|1303941_1304211_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001881266.1|1304230_1305799_-	replication protein	NA	A7BJY2	Enterobacteria_phage	32.3	2.7e-58
WP_000005769.1|1305975_1306527_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001161489.1|1307725_1307893_-	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
WP_001052672.1|1307970_1308663_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000512956.1|1308792_1309062_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001881266.1|1309081_1310650_-	replication protein	NA	A7BJY2	Enterobacteria_phage	32.3	2.7e-58
WP_000005769.1|1310826_1311378_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_156991674.1|1311722_1312908_+|transposase	IS3-like element ISVch4 family transposase	transposase	Q716C2	Shigella_phage	65.1	1.5e-117
WP_000948761.1|1313817_1314129_-	hypothetical protein	NA	E3U9J1	Vibrio_phage	100.0	6.6e-09
WP_001918575.1|1314287_1314605_-	DUF3634 family protein	NA	NA	NA	NA	NA
WP_000877146.1|1314624_1315074_-	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_000194428.1|1315237_1316887_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_001180252.1|1316951_1317470_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_001881287.1|1317552_1317726_-	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000087036.1|1317893_1319588_-	DUF3466 family protein	NA	NA	NA	NA	NA
WP_001174034.1|1319593_1321513_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.7	7.6e-55
WP_000631987.1|1321490_1321733_-	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_001077794.1|1321741_1323868_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
WP_000917529.1|1324327_1324870_-	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000966885.1|1325024_1326035_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_000126926.1|1326108_1330950_-	NAD-glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_001110339.1|1331138_1331357_-	DUF2835 domain-containing protein	NA	NA	NA	NA	NA
WP_000377996.1|1331408_1334033_-	aminopeptidase N	NA	NA	NA	NA	NA
WP_001994019.1|1334105_1334342_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001241333.1|1335290_1335803_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001912825.1|1336119_1337385_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_000347185.1|1337386_1337809_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000092362.1|1337872_1338238_-	peptidase M15	NA	A0A2I7RAT1	Vibrio_phage	60.3	8.7e-37
WP_000279700.1|1338221_1338779_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000291407.1|1338778_1339786_-	radical SAM protein	NA	NA	NA	NA	NA
WP_001005176.1|1339802_1340168_-	hypothetical protein	NA	C8ZKF3	Pseudomonas_phage	46.2	1.8e-05
WP_000521739.1|1340168_1346111_-	fibronectin type III domain-containing protein	NA	M4MHT9	Vibrio_phage	30.9	2.0e-98
WP_000491559.1|1346114_1346510_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000168946.1|1346512_1347052_-	hypothetical protein	NA	M4MD40	Vibrio_phage	35.1	4.5e-21
WP_000250921.1|1347062_1347644_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000907543.1|1347645_1349958_-	hypothetical protein	NA	A0A1Q1PW43	Pseudoalteromonas_phage	22.6	4.4e-09
WP_000967642.1|1349974_1350265_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001081280.1|1350309_1350645_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000907300.1|1350697_1351168_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001994025.1|1351181_1351505_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000049624.1|1351552_1352164_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001252475.1|1352150_1352498_-|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_000020008.1|1352509_1353061_-	hypothetical protein	NA	A0A2I7QU98	Vibrio_phage	28.0	8.9e-09
WP_000667008.1|1353075_1354266_-|capsid	phage major capsid protein	capsid	M4MA06	Vibrio_phage	33.3	1.3e-36
WP_000944879.1|1354364_1355213_-|head,protease	HK97 family phage prohead protease	head,protease	Q6JIM8	Burkholderia_virus	39.1	7.0e-29
WP_000523754.1|1355175_1356501_-|portal	phage portal protein	portal	M4MHV5	Vibrio_phage	38.9	1.2e-75
WP_001070130.1|1356510_1358271_-|terminase	terminase large subunit	terminase	A0A0K1LKI4	Staphylococcus_phage	35.9	1.1e-81
WP_000165579.1|1358461_1358677_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001046237.1|1358704_1359385_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001994028.1|1359381_1359825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080004477.1|1359967_1360378_-|terminase	phage terminase small subunit P27 family	terminase	A0A1W6JP17	Morganella_phage	31.6	5.8e-05
WP_000243876.1|1360848_1361037_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000858033.1|1361247_1361892_+	antirestriction protein ArdA	NA	G0YPX7	Erwinia_phage	33.5	1.1e-10
>prophage 5
NZ_CP024867	Vibrio cholerae strain A1552 chromosome I, complete sequence	3015093	1366547	1374274	3015093		Diadromus_pulchellus_ascovirus(14.29%)	9	NA	NA
WP_001146354.1|1366547_1367135_-	deoxynucleoside kinase	NA	F2NYY4	Diadromus_pulchellus_ascovirus	33.1	2.1e-08
WP_000576446.1|1367154_1367424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000275003.1|1367628_1368222_-	deoxynucleoside kinase	NA	A0A249Y6S3	Cherax_quadricarinatus_iridovirus	30.0	3.7e-08
WP_000784089.1|1368354_1368612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001912807.1|1368608_1368893_-	hypothetical protein	NA	A0A142K9B6	Gordonia_phage	51.9	3.9e-08
WP_001044551.1|1369075_1369936_-	exonuclease	NA	F1D0G7	Vibrio_phage	43.0	3.1e-56
WP_000467314.1|1370129_1370561_-	tellurite resistance TerB family protein	NA	Q1MVI3	Enterobacteria_phage	47.9	2.1e-29
WP_000983185.1|1370585_1372640_-	hypothetical protein	NA	A0A0F7DD46	Delftia_phage	40.8	7.1e-144
WP_000046513.1|1372639_1374274_-	toprim domain-containing protein	NA	L7TLT7	Rhizobium_phage	49.0	1.6e-122
>prophage 6
NZ_CP024867	Vibrio cholerae strain A1552 chromosome I, complete sequence	3015093	2198886	2205503	3015093		Staphylococcus_phage(66.67%)	7	NA	NA
WP_000864130.1|2198886_2199357_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
WP_001122865.1|2199621_2200731_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_000493874.1|2200771_2201425_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_001131994.1|2201429_2202533_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.1	1.3e-43
WP_000543544.1|2202558_2203008_-	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_000366574.1|2203107_2204358_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
WP_000210573.1|2204369_2205503_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
