assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003003955.1_ASM300395v1	NZ_CP021258	Legionella pneumophila subsp. fraseri strain D-5744 chromosome, complete genome	1	200541-201231	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas4,cas2,cas1,cas9	cas4,cas2,cas1,cas9,RT,cas3,PD-DExK,DinG,DEDDh,WYL,csa3	Type II-A,Type II-C,Type II-B	GTTTCAGTGGTTGGATTTTTAGATGAGGGATTATTGG,GTTTCAGTGGTTGGATTTTTAGATGAGGGATTATTGG,GTTTCAGTGGTTGGATTTTTAGATGAGGGATTATTGG	37,37,37	0	0	NA	NA	NA:NA:NA	9,9,8	9	TypeII-A,TypeII-C,TypeII-B	cas4,cas2,cas1,cas9,RT,cas3,PD-DExK,DinG,DEDDh,WYL,csa3	NA|132aa|up_9|NZ_CP021258.1_193644_194040_-,NA|49aa|up_8|NZ_CP021258.1_194036_194183_-,NA|121aa|up_2|NZ_CP021258.1_198165_198528_-,NA|290aa|up_1|NZ_CP021258.1_198493_199363_-,NA|111aa|down_5|NZ_CP021258.1_208284_208617_+,NA|56aa|down_7|NZ_CP021258.1_209789_209957_-,NA|69aa|down_8|NZ_CP021258.1_210197_210404_+	NA|132aa|up_9|NZ_CP021258.1_193644_194040_-	NA	NA|49aa|up_8|NZ_CP021258.1_194036_194183_-	NA	NA|237aa|up_7|NZ_CP021258.1_194197_194908_-	cd14262, VirB5_like, VirB5 protein family	NA|827aa|up_6|NZ_CP021258.1_194904_197385_-	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family	NA|94aa|up_5|NZ_CP021258.1_197371_197653_-	pfam05101, VirB3, Type IV secretory pathway, VirB3-like protein	NA|97aa|up_4|NZ_CP021258.1_197662_197953_-	pfam04956, TrbC, TrbC/VIRB2 family	NA|68aa|up_3|NZ_CP021258.1_197949_198153_-	pfam02599, CsrA, Global regulator protein family	NA|121aa|up_2|NZ_CP021258.1_198165_198528_-	NA	NA|290aa|up_1|NZ_CP021258.1_198493_199363_-	NA	NA|222aa|up_0|NZ_CP021258.1_199526_200192_+	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	cas4|198aa|down_0|NZ_CP021258.1_201446_202040_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas2|100aa|down_1|NZ_CP021258.1_202020_202320_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|331aa|down_2|NZ_CP021258.1_202326_203319_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas9|1373aa|down_3|NZ_CP021258.1_203315_207434_-	cd09704, Csx12, CRISPR/Cas system-associated protein Cas9	NA|73aa|down_4|NZ_CP021258.1_207605_207824_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|111aa|down_5|NZ_CP021258.1_208284_208617_+	NA	NA|317aa|down_6|NZ_CP021258.1_208606_209557_+	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|56aa|down_7|NZ_CP021258.1_209789_209957_-	NA	NA|69aa|down_8|NZ_CP021258.1_210197_210404_+	NA	NA|402aa|down_9|NZ_CP021258.1_210352_211558_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons
GCF_003003955.1_ASM300395v1	NZ_CP021258	Legionella pneumophila subsp. fraseri strain D-5744 chromosome, complete genome	2	1742940-1743060	2	CRISPRCasFinder	no		cas4,cas2,cas1,cas9,RT,cas3,PD-DExK,DinG,DEDDh,WYL,csa3	Orphan	CCTGGCAGCAGCGCTGATCAGCATTCCAAAAAGC	34	0	0	NA	NA	NA	1	1	Orphan	cas4,cas2,cas1,cas9,RT,cas3,PD-DExK,DinG,DEDDh,WYL,csa3	NA|475aa|up_5|NZ_CP021258.1_1736202_1737627_+,NA|62aa|up_0|NZ_CP021258.1_1742543_1742729_-,NA|327aa|down_3|NZ_CP021258.1_1747230_1748211_-	NA|245aa|up_9|NZ_CP021258.1_1730024_1730759_-	PRK10260, PRK10260, L,D-transpeptidase; Provisional	NA|673aa|up_8|NZ_CP021258.1_1730819_1732838_-	PRK11154, fadJ, fatty acid oxidation complex subunit alpha FadJ	NA|440aa|up_7|NZ_CP021258.1_1732830_1734150_-	PRK08170, PRK08170, acetyl-CoA C-acetyltransferase	NA|355aa|up_6|NZ_CP021258.1_1734313_1735378_-	pfam18493, DUF5617, Domain of unknown function (DUF5617)	NA|475aa|up_5|NZ_CP021258.1_1736202_1737627_+	NA	NA|226aa|up_4|NZ_CP021258.1_1737737_1738415_-	pfam08808, RES, RES domain	NA|125aa|up_3|NZ_CP021258.1_1738416_1738791_-	pfam09722, DUF2384, Protein of unknown function (DUF2384)	NA|219aa|up_2|NZ_CP021258.1_1738977_1739634_+	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]	NA|772aa|up_1|NZ_CP021258.1_1739854_1742170_+	COG2352, Ppc, Phosphoenolpyruvate carboxylase [Energy production and conversion]	NA|62aa|up_0|NZ_CP021258.1_1742543_1742729_-	NA	NA|418aa|down_0|NZ_CP021258.1_1743999_1745253_-	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional	NA|357aa|down_1|NZ_CP021258.1_1745261_1746332_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|142aa|down_2|NZ_CP021258.1_1746515_1746941_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|327aa|down_3|NZ_CP021258.1_1747230_1748211_-	NA	NA|316aa|down_4|NZ_CP021258.1_1748561_1749509_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|250aa|down_5|NZ_CP021258.1_1749832_1750582_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|176aa|down_6|NZ_CP021258.1_1750647_1751175_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|319aa|down_7|NZ_CP021258.1_1751171_1752128_-	pfam04229, GrpB, GrpB protein	NA|594aa|down_8|NZ_CP021258.1_1752131_1753913_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|487aa|down_9|NZ_CP021258.1_1753905_1755366_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
GCF_003003955.1_ASM300395v1	NZ_CP021258	Legionella pneumophila subsp. fraseri strain D-5744 chromosome, complete genome	3	2677034-2677206	3	CRISPRCasFinder	no		cas4,cas2,cas1,cas9,RT,cas3,PD-DExK,DinG,DEDDh,WYL,csa3	Orphan	TCGAATAAATTTACCGCCATAACAGTAATTT	31	0	0	NA	NA	NA	2	2	Orphan	cas4,cas2,cas1,cas9,RT,cas3,PD-DExK,DinG,DEDDh,WYL,csa3	NA|341aa|up_9|NZ_CP021258.1_2668421_2669444_-,NA|158aa|up_1|NZ_CP021258.1_2675206_2675680_+,NA|388aa|down_3|NZ_CP021258.1_2678988_2680152_+,NA|119aa|down_6|NZ_CP021258.1_2682221_2682578_+,NA|301aa|down_8|NZ_CP021258.1_2684131_2685034_-,NA|485aa|down_9|NZ_CP021258.1_2685195_2686650_+	NA|341aa|up_9|NZ_CP021258.1_2668421_2669444_-	NA	NA|76aa|up_8|NZ_CP021258.1_2669939_2670167_+	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|407aa|up_7|NZ_CP021258.1_2670153_2671374_+	cd17793, HipA, type II toxin-antitoxin sytem toxin HipA and similar proteins	NA|119aa|up_6|NZ_CP021258.1_2671408_2671765_-	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain	NA|302aa|up_5|NZ_CP021258.1_2671804_2672710_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|287aa|up_4|NZ_CP021258.1_2672800_2673661_+	pfam11019, DUF2608, Protein of unknown function (DUF2608)	NA|104aa|up_3|NZ_CP021258.1_2674324_2674636_-	cd02226, cupin_YdbB-like, Bacillus subtilis YdbB and related proteins, cupin domain	NA|83aa|up_2|NZ_CP021258.1_2674651_2674900_-	PRK07206, PRK07206, hypothetical protein; Provisional	NA|158aa|up_1|NZ_CP021258.1_2675206_2675680_+	NA	NA|306aa|up_0|NZ_CP021258.1_2675869_2676787_+	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold	NA|76aa|down_0|NZ_CP021258.1_2677227_2677455_+	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|103aa|down_1|NZ_CP021258.1_2677451_2677760_+	TIGR03071, couple_hipA, HipA N-terminal domain	NA|313aa|down_2|NZ_CP021258.1_2677756_2678695_+	pfam07804, HipA_C, HipA-like C-terminal domain	NA|388aa|down_3|NZ_CP021258.1_2678988_2680152_+	NA	NA|396aa|down_4|NZ_CP021258.1_2680143_2681331_-	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|56aa|down_5|NZ_CP021258.1_2681455_2681623_-	pfam11752, DUF3309, Protein of unknown function (DUF3309)	NA|119aa|down_6|NZ_CP021258.1_2682221_2682578_+	NA	NA|214aa|down_7|NZ_CP021258.1_2682946_2683588_-	pfam09445, Methyltransf_15, RNA cap guanine-N2 methyltransferase	NA|301aa|down_8|NZ_CP021258.1_2684131_2685034_-	NA	NA|485aa|down_9|NZ_CP021258.1_2685195_2686650_+	NA
