The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017428	Staphylococcus simulans strain MR3 chromosome, complete genome	2679685	995004	1037730	2679685	head,tRNA,tail,integrase,protease,transposase,capsid	Staphylococcus_phage(26.32%)	42	1027700:1027717	1041674:1041691
WP_105967014.1|995004_996321_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	30.8	9.2e-44
WP_105967013.1|996505_997774_-	threonine ammonia-lyase IlvA	NA	NA	NA	NA	NA
WP_002481742.1|997786_998368_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_002481741.1|998360_999743_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_105967012.1|999758_1000799_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_002481739.1|1000795_1002328_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	27.0	2.7e-10
WP_002481738.1|1002353_1003358_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_002481737.1|1003416_1003890_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_002481736.1|1003886_1005629_-	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	31.9	4.4e-70
WP_105967011.1|1005635_1007330_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_023015916.1|1007790_1008264_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_105967010.1|1008232_1008898_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	A0A0R6PI74	Moraxella_phage	38.5	7.2e-05
WP_070848577.1|1008873_1009338_+	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_023015914.1|1009337_1010363_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	41.2	1.9e-60
WP_105967009.1|1010420_1012016_-	MutS family DNA mismatch repair protein	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	26.5	1.8e-17
WP_105967008.1|1012355_1014281_-	ABC-F type ribosomal protection protein	NA	A0A2H4UUX5	Bodo_saltans_virus	29.4	9.3e-53
WP_002481727.1|1014845_1015487_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_002481726.1|1015537_1015762_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_070463416.1|1015817_1016906_-	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_105967007.1|1017141_1018626_+	sucrose-6-phosphate hydrolase	NA	NA	NA	NA	NA
WP_002481723.1|1018700_1019417_-	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	34.3	6.1e-26
WP_105967006.1|1019419_1020721_-	GHKL domain-containing protein	NA	NA	NA	NA	NA
WP_023015908.1|1020760_1020898_-	cyclic lactone autoinducer peptide	NA	NA	NA	NA	NA
WP_002481720.1|1020897_1021476_-	accessory gene regulator AgrB	NA	NA	NA	NA	NA
WP_158256887.1|1021787_1021952_+	delta-lysin family phenol-soluble modulin	NA	NA	NA	NA	NA
WP_105967004.1|1022256_1023057_-	carbon-nitrogen family hydrolase	NA	NA	NA	NA	NA
WP_105967003.1|1023277_1024726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070626462.1|1024814_1025558_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002481716.1|1025774_1026059_+	co-chaperone GroES	NA	A0A221S4A8	uncultured_virus	35.9	1.8e-13
WP_002481715.1|1026097_1027717_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	53.0	3.8e-156
1027700:1027717	attL	ATGCCAGGCATGATGTAA	NA	NA	NA	NA
WP_105977845.1|1027780_1028956_-|integrase	site-specific integrase	integrase	A0A1W6JPB2	Staphylococcus_phage	66.9	1.0e-150
WP_106420982.1|1028965_1029547_-	helix-turn-helix transcriptional regulator	NA	A0A0A8WFJ2	Clostridium_phage	37.1	2.3e-07
WP_106420983.1|1029640_1029859_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_106420984.1|1029862_1030168_+	helix-turn-helix domain-containing protein	NA	A0A1W6JPE8	Staphylococcus_phage	76.5	1.1e-35
WP_106420985.1|1030169_1030373_+	pathogenicity island protein	NA	A0A1W6JQF4	Staphylococcus_phage	68.7	7.5e-22
WP_106420986.1|1030375_1030798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_106420987.1|1030797_1031097_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	50.5	9.4e-21
WP_106420988.1|1031199_1033539_+	DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	41.9	6.0e-139
WP_106420989.1|1033922_1034189_+	hypothetical protein	NA	H9A0M1	Staphylococcus_phage	42.5	1.8e-07
WP_106420990.1|1035584_1036151_+|head,protease	HK97 family phage prohead protease	head,protease	Q8SBP9	Clostridium_phage	32.2	5.2e-12
WP_106420991.1|1036152_1037385_+|capsid	phage major capsid protein	capsid	NA	NA	NA	NA
WP_106420992.1|1037448_1037730_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A0S2GLH6	Bacillus_phage	31.6	3.0e-05
1041674:1041691	attR	ATGCCAGGCATGATGTAA	NA	NA	NA	NA
>prophage 2
NZ_CP017428	Staphylococcus simulans strain MR3 chromosome, complete genome	2679685	1167026	1202880	2679685	transposase,tRNA	Staphylococcus_phage(89.29%)	36	NA	NA
WP_105966656.1|1167026_1169069_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	30.3	1.1e-67
WP_103364072.1|1169329_1169821_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421001.1|1170021_1170714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_105966654.1|1170829_1172218_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	57.3	5.9e-158
WP_105966653.1|1172220_1173231_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	53.7	5.5e-97
WP_023016239.1|1173221_1173479_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	75.7	4.7e-29
WP_023016238.1|1173556_1174048_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	49.7	4.9e-35
WP_057509771.1|1174013_1174787_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	66.5	1.3e-93
WP_105966652.1|1174839_1176432_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	81.4	6.8e-259
WP_070848406.1|1176819_1178016_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	81.6	3.0e-187
WP_002481255.1|1178112_1179012_+	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	75.4	4.0e-99
WP_105966651.1|1179133_1179970_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	63.8	4.2e-103
WP_002481253.1|1180021_1180375_-	CrcB family protein	NA	NA	NA	NA	NA
WP_002481252.1|1180367_1180739_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	64.5	6.1e-38
WP_002481251.1|1180799_1181108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002481250.1|1181295_1182012_+	transaldolase	NA	M1PR54	Cyanophage	35.0	3.8e-20
WP_105976125.1|1182152_1182614_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	40.9	1.4e-18
WP_060804831.1|1182588_1183029_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023016001.1|1183028_1183526_-	hypothetical protein	NA	A0A2H4PQT5	Staphylococcus_phage	42.5	1.1e-21
WP_023016000.1|1183730_1183952_+	hypothetical protein	NA	NA	NA	NA	NA
WP_105967157.1|1184125_1185442_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	31.0	1.4e-44
WP_002481245.1|1185838_1186684_+	hypothetical protein	NA	A0A1W6JNR1	Staphylococcus_phage	41.7	4.2e-42
WP_105966649.1|1186825_1188307_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	64.5	1.0e-14
WP_105977717.1|1188701_1189751_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	59.9	4.1e-119
WP_057509781.1|1189755_1190388_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	61.4	2.8e-67
WP_105966647.1|1190403_1191585_+	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	73.5	1.8e-168
WP_070626312.1|1191617_1192079_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	75.2	3.9e-58
WP_023015993.1|1192152_1193148_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	63.3	5.8e-115
WP_002481238.1|1193409_1194240_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_002481237.1|1194416_1195373_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_105966646.1|1195438_1195996_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	61.6	3.5e-61
WP_105966645.1|1195992_1196955_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	83.7	4.3e-67
WP_002481234.1|1197227_1198406_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	73.2	3.0e-163
WP_105966644.1|1198785_1201200_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	85.0	0.0e+00
WP_002481231.1|1201220_1201538_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	66.7	1.5e-32
WP_023015991.1|1201623_1202880_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	75.0	2.6e-40
>prophage 3
NZ_CP017428	Staphylococcus simulans strain MR3 chromosome, complete genome	2679685	1332665	1342739	2679685	tRNA	Klosneuvirus(33.33%)	7	NA	NA
WP_106421008.1|1332665_1334939_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.9	4.6e-75
WP_023016066.1|1334957_1335476_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	44.4	8.1e-28
WP_002481117.1|1335827_1338017_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	38.0	9.0e-12
WP_002481116.1|1338032_1338485_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_002481115.1|1338481_1339357_+	hypothetical protein	NA	A0A0N9SGH1	Paenibacillus_phage	33.1	6.8e-11
WP_105966607.1|1339682_1340957_+|tRNA	histidine--tRNA ligase	tRNA	A0A2K9L6G5	Tupanvirus	23.8	2.3e-15
WP_105966606.1|1340972_1342739_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SIS0	Klosneuvirus	33.7	9.2e-07
>prophage 4
NZ_CP017428	Staphylococcus simulans strain MR3 chromosome, complete genome	2679685	1638809	1679566	2679685	head,tail,integrase,portal,terminase,capsid	Staphylococcus_phage(39.13%)	62	1639620:1639642	1679602:1679624
WP_002480822.1|1638809_1639283_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	40.5	1.1e-26
1639620:1639642	attL	ATGATTTTTGCCTTGTGAGAATA	NA	NA	NA	NA
WP_106421026.1|1640108_1640531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421027.1|1640530_1641088_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0U4JD08	Gordonia_phage	32.2	1.2e-05
WP_105976117.1|1641504_1641705_-	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	87.9	1.9e-25
WP_105976116.1|1641691_1641802_-	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	86.1	3.9e-09
WP_105976115.1|1641875_1642004_-	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	92.9	4.7e-14
WP_105976114.1|1642397_1642940_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105976113.1|1643649_1645122_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A2H4JAU4	uncultured_Caudovirales_phage	71.8	2.6e-220
WP_105976112.1|1645122_1645371_-	PTS mannose transporter subunit IID	NA	Q4ZD59	Staphylococcus_phage	87.8	2.2e-36
WP_106421028.1|1645510_1645810_-	DUF2951 family protein	NA	Q4ZD60	Staphylococcus_phage	80.2	6.3e-33
WP_105976111.1|1645866_1646145_-	hypothetical protein	NA	A0A2H4J771	uncultured_Caudovirales_phage	63.2	7.6e-17
WP_105976110.1|1646150_1648019_-	hypothetical protein	NA	A0A2H4JCH3	uncultured_Caudovirales_phage	45.8	4.6e-150
WP_106421029.1|1648035_1649688_-	hypothetical protein	NA	A0A2P1JUJ3	Bacillus_phage	36.3	4.7e-45
WP_106421030.1|1649698_1650628_-	hypothetical protein	NA	A0A2H4J5C4	uncultured_Caudovirales_phage	59.6	4.3e-48
WP_106421031.1|1650631_1654405_-|tail	phage tail protein	tail	H9A0P1	Staphylococcus_phage	65.0	9.8e-115
WP_106421032.1|1654427_1654742_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421033.1|1654774_1655233_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421034.1|1655300_1655858_-|tail	phage tail protein	tail	A0A1W6JQQ8	Staphylococcus_phage	33.5	5.1e-20
WP_106421035.1|1655871_1656342_-	hypothetical protein	NA	A0A2H4PQL6	Staphylococcus_phage	31.8	3.5e-14
WP_106421036.1|1656356_1656740_-	HK97 gp10 family phage protein	NA	M9NRJ3	Staphylococcus_phage	46.3	4.7e-25
WP_106421037.1|1656743_1657067_-|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_105976100.1|1657056_1657377_-|head,tail	phage head-tail adapter protein	head,tail	NA	NA	NA	NA
WP_105976099.1|1657573_1658533_-|capsid	phage capsid protein	capsid	A0A097PAW2	Streptococcus_pyogenes_phage	53.4	1.1e-35
WP_105976098.1|1658547_1659117_-	hypothetical protein	NA	I6SB44	Staphylococcus_virus	45.2	5.6e-22
WP_158257427.1|1659220_1660198_-|head	phage head morphogenesis protein	head	Q4ZC73	Staphylococcus_virus	42.0	9.5e-62
WP_142397735.1|1660175_1661528_-|portal	phage portal protein	portal	A0A1W6JQP9	Staphylococcus_phage	49.8	7.3e-121
WP_106421040.1|1661572_1662844_-|terminase	PBSX family phage terminase large subunit	terminase	Q4ZCF2	Staphylococcus_virus	93.1	2.4e-230
WP_002480794.1|1662843_1663221_-	hypothetical protein	NA	A0A1W6JP86	Staphylococcus_phage	64.0	6.7e-40
WP_106421041.1|1663299_1663845_-	hypothetical protein	NA	NA	NA	NA	NA
WP_070548334.1|1664041_1664467_-	transcriptional regulator	NA	A0A1J0MFW0	Staphylococcus_phage	80.9	2.3e-57
WP_106421042.1|1664593_1664770_-	transcriptional regulator	NA	Q4ZC79	Staphylococcus_virus	87.9	2.1e-20
WP_106421043.1|1664772_1665069_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421044.1|1665613_1665841_-	hypothetical protein	NA	Q4ZC83	Staphylococcus_virus	71.6	3.6e-17
WP_106421045.1|1665837_1666098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158263702.1|1666378_1666555_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105976084.1|1666555_1666975_-	DUF3310 domain-containing protein	NA	Q4ZC89	Staphylococcus_virus	60.0	7.7e-21
WP_106421046.1|1666975_1667491_-	hypothetical protein	NA	Q4ZC91	Staphylococcus_virus	30.8	3.6e-12
WP_105980080.1|1667503_1667695_-	hypothetical protein	NA	Q4ZC92	Staphylococcus_virus	98.4	6.6e-28
WP_106421047.1|1667695_1668103_-	RusA family crossover junction endodeoxyribonuclease	NA	Q4ZC94	Staphylococcus_virus	91.9	6.9e-67
WP_060804512.1|1668268_1669042_-	ATP-binding protein	NA	A0A1W6JP70	Staphylococcus_phage	79.2	6.0e-104
WP_106421049.1|1669054_1669792_-	replication protein	NA	Q4ZDQ6	Staphylococcus_virus	65.4	9.0e-65
WP_106421050.1|1669837_1670320_+	hypothetical protein	NA	A0A2H4JC39	uncultured_Caudovirales_phage	61.9	9.4e-47
WP_106421051.1|1670335_1671007_-	hypothetical protein	NA	Q4ZC99	Staphylococcus_virus	86.0	4.7e-113
WP_106421052.1|1671019_1671466_-	single-stranded DNA-binding protein	NA	A0A1J0MFD7	Staphylococcus_phage	90.2	3.1e-52
WP_106421053.1|1671465_1672137_-	single-stranded DNA-binding protein	NA	A0A1J0MF78	Staphylococcus_phage	89.5	8.4e-110
WP_106421054.1|1672099_1672354_-	DUF2483 domain-containing protein	NA	Q4ZCA2	Staphylococcus_virus	96.4	6.1e-37
WP_106421055.1|1672346_1672571_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421056.1|1672670_1672886_-	hypothetical protein	NA	Q4ZCA4	Staphylococcus_virus	90.1	3.3e-28
WP_002480770.1|1672898_1673201_-	DUF771 domain-containing protein	NA	Q4ZCA6	Staphylococcus_virus	98.0	6.7e-51
WP_106421057.1|1673315_1673639_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159079669.1|1673627_1673786_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421058.1|1673832_1674060_-	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	71.6	2.0e-23
WP_106421059.1|1674060_1674834_-	phage antirepressor KilAC domain-containing protein	NA	Q4ZCB0	Staphylococcus_virus	99.2	1.5e-142
WP_105976070.1|1674949_1675186_+	hypothetical protein	NA	Q4ZBN3	Staphylococcus_phage	84.6	6.0e-31
WP_106421060.1|1675354_1675594_-	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.9	3.9e-38
WP_105996454.1|1675786_1676119_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JC44	uncultured_Caudovirales_phage	94.5	1.0e-47
WP_106421061.1|1676132_1676606_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4J4F2	uncultured_Caudovirales_phage	65.4	1.1e-55
WP_105976065.1|1676592_1677234_+	DUF4352 domain-containing protein	NA	NA	NA	NA	NA
WP_158257428.1|1677412_1677553_+	hypothetical protein	NA	NA	NA	NA	NA
WP_106421062.1|1677647_1678163_+	hypothetical protein	NA	A0A0H3U494	Staphylococcus_phage	48.0	3.5e-39
WP_106421063.1|1678164_1678473_+	hypothetical protein	NA	NA	NA	NA	NA
WP_106421064.1|1678537_1679566_+|integrase	site-specific integrase	integrase	Q4ZCC1	Staphylococcus_virus	98.8	5.1e-191
1679602:1679624	attR	ATGATTTTTGCCTTGTGAGAATA	NA	NA	NA	NA
>prophage 5
NZ_CP017428	Staphylococcus simulans strain MR3 chromosome, complete genome	2679685	1952199	1960621	2679685		Prochlorococcus_phage(33.33%)	9	NA	NA
WP_023015953.1|1952199_1952766_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.3	2.6e-32
WP_060803898.1|1952762_1953803_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.1	1.6e-70
WP_002480500.1|1953807_1955229_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	30.8	5.6e-47
WP_002480499.1|1955207_1957397_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.4	7.4e-139
WP_070626693.1|1957389_1958061_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_002480497.1|1958060_1958321_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002480496.1|1958320_1959025_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	42.9	1.1e-48
WP_002480495.1|1959024_1960152_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_002480494.1|1960138_1960621_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	4.7e-22
>prophage 6
NZ_CP017428	Staphylococcus simulans strain MR3 chromosome, complete genome	2679685	2201680	2214923	2679685	head,tail,integrase,protease,portal,terminase,capsid	Staphylococcus_phage(46.15%)	19	2209551:2209565	2214386:2214400
WP_105977691.1|2201680_2201989_-|head	phage head closure protein	head	NA	NA	NA	NA
WP_105977690.1|2202168_2203812_-|terminase	terminase large subunit	terminase	A0A290GJW3	Caldibacillus_phage	50.8	1.0e-156
WP_106421088.1|2203804_2204125_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105977689.1|2204259_2204553_-	HNH endonuclease	NA	R9TNN2	Paenibacillus_phage	43.8	7.3e-18
WP_060804152.1|2204545_2204827_-|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_096754297.1|2204892_2206125_-|capsid	phage major capsid protein	capsid	NA	NA	NA	NA
WP_105977688.1|2206126_2206693_-|head,protease	HK97 family phage prohead protease	head,protease	Q8SBP9	Clostridium_phage	33.8	2.3e-12
WP_105977695.1|2206679_2207819_-|portal	phage portal protein	portal	A0A1L2BY94	Clostridium_phage	36.0	3.3e-58
WP_106421089.1|2208085_2208427_-	pathogenicity island protein	NA	A0A1W6JQD5	Staphylococcus_phage	70.5	2.2e-42
WP_105977686.1|2208675_2210175_-	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	73.5	3.0e-216
2209551:2209565	attL	TTTGGTTATACCATT	NA	NA	NA	NA
WP_158256891.1|2210171_2211074_-	mobile element-associated protein	NA	A0A1W6JQL5	Staphylococcus_phage	42.6	2.9e-57
WP_105977684.1|2211135_2211411_-	DUF1474 family protein	NA	A0A1W6JPG5	Staphylococcus_phage	51.6	4.0e-18
WP_105977683.1|2211410_2211704_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105977682.1|2211706_2211910_-	pathogenicity island protein	NA	A0A2H4JD47	uncultured_Caudovirales_phage	74.6	1.1e-20
WP_105977681.1|2211926_2212172_-	DUF771 domain-containing protein	NA	NA	NA	NA	NA
WP_105977680.1|2212175_2212394_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	54.2	2.3e-13
WP_105977679.1|2212556_2213258_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JH10	uncultured_Caudovirales_phage	51.7	3.2e-51
WP_105977678.1|2213277_2214336_+|integrase	site-specific integrase	integrase	A0A1W6JQE7	Staphylococcus_phage	42.7	1.7e-64
WP_105966443.1|2214671_2214923_-	hypothetical protein	NA	C8CH40	Staphylococcus_phage	50.6	2.8e-18
2214386:2214400	attR	AATGGTATAACCAAA	NA	NA	NA	NA
>prophage 7
NZ_CP017428	Staphylococcus simulans strain MR3 chromosome, complete genome	2679685	2258721	2271201	2679685		uncultured_Caudovirales_phage(50.0%)	10	NA	NA
WP_031262609.1|2258721_2259690_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.4	7.8e-133
WP_002481524.1|2259995_2260970_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	90.7	2.1e-170
WP_023015386.1|2261082_2263188_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	88.2	0.0e+00
WP_023015387.1|2263150_2263552_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	65.4	1.8e-43
WP_002481521.1|2264436_2265324_+	DMT family transporter	NA	NA	NA	NA	NA
WP_105977676.1|2265326_2265830_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.1	6.6e-51
WP_002481519.1|2266012_2267536_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	37.7	7.1e-72
WP_002481518.1|2267830_2269333_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.3	3.0e-67
WP_002481517.1|2269458_2269995_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_002481516.1|2270136_2271201_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.2	2.2e-19
>prophage 1
NZ_CP017429	Staphylococcus simulans strain MR3 plasmid unnamed5, complete sequence	146786	41551	81087	146786	transposase	Staphylococcus_phage(58.33%)	41	NA	NA
WP_106421187.1|41551_42226_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.2	7.6e-127
WP_106421188.1|42677_43571_-	hypothetical protein	NA	NA	NA	NA	NA
WP_159079674.1|43726_43885_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421189.1|44779_45019_+	hypothetical protein	NA	NA	NA	NA	NA
WP_106421262.1|45140_45293_-	ParA family protein	NA	NA	NA	NA	NA
WP_108738923.1|47007_47949_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_106421451.1|49536_49764_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421191.1|49787_50732_-	DnaD domain protein	NA	Q9MCM7	Streptococcus_virus	30.3	2.4e-22
WP_105977920.1|51698_51830_+	beta-class phenol-soluble modulin	NA	NA	NA	NA	NA
WP_106421192.1|52507_52948_+	LytTR family transcriptional regulator	NA	NA	NA	NA	NA
WP_106421193.1|52944_53403_+	DUF3021 domain-containing protein	NA	NA	NA	NA	NA
WP_106421194.1|53591_54266_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	96.9	1.6e-124
WP_106421195.1|54479_55313_-	hypothetical protein	NA	NA	NA	NA	NA
WP_108738924.1|55496_55589_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_106421197.1|56153_56507_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421198.1|56554_56752_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421200.1|57101_57776_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	97.3	2.4e-125
WP_106421201.1|58211_58511_+	DUF2089 family protein	NA	NA	NA	NA	NA
WP_106421202.1|58513_58810_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011276570.1|58947_59133_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_106421203.1|59137_59476_-	hypothetical protein	NA	NA	NA	NA	NA
WP_159079675.1|62011_62698_+	ATP-binding cassette domain-containing protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	32.2	2.6e-10
WP_023016193.1|62710_63619_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	41.6	1.1e-43
WP_106421205.1|63619_64372_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_106421206.1|64368_65106_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_106421207.1|67095_67431_+	SdpI family protein	NA	NA	NA	NA	NA
WP_106421208.1|67622_67928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421209.1|68575_69568_-	protein rep	NA	NA	NA	NA	NA
WP_106421210.1|70187_70481_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002500713.1|70487_71114_+	DUF443 family protein	NA	NA	NA	NA	NA
WP_106421211.1|71124_71439_+	DUF4176 domain-containing protein	NA	A0A1X9I6T6	Streptococcus_phage	46.4	4.7e-15
WP_002446825.1|71552_71654_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_159079676.1|73821_73959_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421213.1|74124_74331_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421185.1|75010_75211_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	61.9	2.5e-17
WP_106421215.1|75341_76016_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	95.1	3.9e-123
WP_106421216.1|76160_77105_+	hypothetical protein	NA	NA	NA	NA	NA
WP_103370613.1|77252_77927_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	96.9	7.1e-125
WP_106421263.1|77974_78400_+	protein rep	NA	NA	NA	NA	NA
WP_000700648.1|79086_79572_-	lincosamide nucleotidyltransferase Lnu(A)	NA	A0A2K5B286	Erysipelothrix_phage	31.2	2.8e-14
WP_103370613.1|80412_81087_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	96.9	7.1e-125
>prophage 2
NZ_CP017429	Staphylococcus simulans strain MR3 plasmid unnamed5, complete sequence	146786	95427	123379	146786	transposase	Staphylococcus_phage(63.64%)	28	NA	NA
WP_103370613.1|95427_96102_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	96.9	7.1e-125
WP_106421234.1|96111_96957_-	protein rep	NA	NA	NA	NA	NA
WP_105988897.1|97495_98041_-	hypothetical protein	NA	NA	NA	NA	NA
WP_103370613.1|99312_99987_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	96.9	7.1e-125
WP_106421237.1|100021_100843_-	protein rep	NA	NA	NA	NA	NA
WP_106421238.1|101292_101859_+	hypothetical protein	NA	NA	NA	NA	NA
WP_106421239.1|103009_103900_-	protein rep	NA	NA	NA	NA	NA
WP_106421240.1|103931_104606_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.2	1.7e-126
WP_106421242.1|105323_105704_+	hypothetical protein	NA	NA	NA	NA	NA
WP_106421243.1|105845_107180_-|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	47.2	8.0e-112
WP_106421244.1|107899_108574_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	94.2	1.6e-121
WP_023016133.1|108797_108998_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	61.9	2.5e-17
WP_106421245.1|111555_112230_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	95.1	6.6e-123
WP_106421246.1|112579_113137_+	hypothetical protein	NA	A0A0N9SJ02	Staphylococcus_phage	50.8	4.3e-27
WP_106421247.1|113754_114363_+	recombinase family protein	NA	G8I4U3	Mycobacterium_phage	30.2	5.0e-13
WP_106421248.1|114545_114773_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159079677.1|115032_115188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421249.1|115207_116911_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	35.9	2.3e-79
WP_106421250.1|117128_117248_-	SapB/AmfS family lantipeptide	NA	NA	NA	NA	NA
WP_106421250.1|117267_117387_-	SapB/AmfS family lantipeptide	NA	NA	NA	NA	NA
WP_106421250.1|117406_117526_-	SapB/AmfS family lantipeptide	NA	NA	NA	NA	NA
WP_106421251.1|117560_120134_-	protein kinase/lanthionine synthetase C family protein	NA	NA	NA	NA	NA
WP_159079678.1|120193_120334_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421252.1|120348_121005_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421253.1|121195_121519_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_159079679.1|121511_122072_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_106421255.1|122083_122680_+	NDxxF motif lipoprotein	NA	NA	NA	NA	NA
WP_106421256.1|122746_123379_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.0	9.3e-119
