The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017430	Staphylococcus simulans strain MR4 chromosome, complete genome	2685102	995004	1037730	2685102	tRNA,capsid,protease,transposase,head,integrase,tail	Staphylococcus_phage(26.32%)	42	1027700:1027717	1041674:1041691
WP_105967014.1|995004_996321_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	30.8	9.2e-44
WP_105967013.1|996505_997774_-	threonine ammonia-lyase IlvA	NA	NA	NA	NA	NA
WP_002481742.1|997786_998368_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_002481741.1|998360_999743_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_105967012.1|999758_1000799_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_002481739.1|1000795_1002328_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	27.0	2.7e-10
WP_002481738.1|1002353_1003358_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_002481737.1|1003416_1003890_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_002481736.1|1003886_1005629_-	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	31.9	4.4e-70
WP_105967011.1|1005635_1007330_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_023015916.1|1007790_1008264_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_105967010.1|1008232_1008898_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	A0A0R6PI74	Moraxella_phage	38.5	7.2e-05
WP_070848577.1|1008873_1009338_+	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_023015914.1|1009337_1010363_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	41.2	1.9e-60
WP_105967009.1|1010420_1012016_-	MutS family DNA mismatch repair protein	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	26.5	1.8e-17
WP_105967008.1|1012355_1014281_-	ABC-F type ribosomal protection protein	NA	A0A2H4UUX5	Bodo_saltans_virus	29.4	9.3e-53
WP_002481727.1|1014845_1015487_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_002481726.1|1015537_1015762_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_070463416.1|1015817_1016906_-	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_105967007.1|1017141_1018626_+	sucrose-6-phosphate hydrolase	NA	NA	NA	NA	NA
WP_002481723.1|1018700_1019417_-	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	34.3	6.1e-26
WP_105967006.1|1019419_1020721_-	GHKL domain-containing protein	NA	NA	NA	NA	NA
WP_023015908.1|1020760_1020898_-	cyclic lactone autoinducer peptide	NA	NA	NA	NA	NA
WP_002481720.1|1020897_1021476_-	accessory gene regulator AgrB	NA	NA	NA	NA	NA
WP_158256887.1|1021787_1021952_+	delta-lysin family phenol-soluble modulin	NA	NA	NA	NA	NA
WP_105967004.1|1022256_1023057_-	carbon-nitrogen family hydrolase	NA	NA	NA	NA	NA
WP_105967003.1|1023277_1024726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070626462.1|1024814_1025558_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002481716.1|1025774_1026059_+	co-chaperone GroES	NA	A0A221S4A8	uncultured_virus	35.9	1.8e-13
WP_002481715.1|1026097_1027717_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	53.0	3.8e-156
1027700:1027717	attL	ATGCCAGGCATGATGTAA	NA	NA	NA	NA
WP_105977845.1|1027780_1028956_-|integrase	site-specific integrase	integrase	A0A1W6JPB2	Staphylococcus_phage	66.9	1.0e-150
WP_106420982.1|1028965_1029547_-	helix-turn-helix transcriptional regulator	NA	A0A0A8WFJ2	Clostridium_phage	37.1	2.3e-07
WP_106420983.1|1029640_1029859_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_106420984.1|1029862_1030168_+	helix-turn-helix domain-containing protein	NA	A0A1W6JPE8	Staphylococcus_phage	76.5	1.1e-35
WP_106420985.1|1030169_1030373_+	pathogenicity island protein	NA	A0A1W6JQF4	Staphylococcus_phage	68.7	7.5e-22
WP_106420986.1|1030375_1030798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_106420987.1|1030797_1031097_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	50.5	9.4e-21
WP_106420988.1|1031199_1033539_+	DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	41.9	6.0e-139
WP_106420989.1|1033922_1034189_+	hypothetical protein	NA	H9A0M1	Staphylococcus_phage	42.5	1.8e-07
WP_106420990.1|1035584_1036151_+|head,protease	HK97 family phage prohead protease	head,protease	Q8SBP9	Clostridium_phage	32.2	5.2e-12
WP_106420991.1|1036152_1037385_+|capsid	phage major capsid protein	capsid	NA	NA	NA	NA
WP_106420992.1|1037448_1037730_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A0S2GLH6	Bacillus_phage	31.6	3.0e-05
1041674:1041691	attR	ATGCCAGGCATGATGTAA	NA	NA	NA	NA
>prophage 2
NZ_CP017430	Staphylococcus simulans strain MR4 chromosome, complete genome	2685102	1167026	1202880	2685102	tRNA,transposase	Staphylococcus_phage(89.29%)	36	NA	NA
WP_105966656.1|1167026_1169069_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	30.3	1.1e-67
WP_103364072.1|1169329_1169821_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421001.1|1170021_1170714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_105966654.1|1170829_1172218_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	57.3	5.9e-158
WP_105966653.1|1172220_1173231_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	53.7	5.5e-97
WP_023016239.1|1173221_1173479_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	75.7	4.7e-29
WP_023016238.1|1173556_1174048_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	49.7	4.9e-35
WP_057509771.1|1174013_1174787_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	66.5	1.3e-93
WP_105966652.1|1174839_1176432_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	81.4	6.8e-259
WP_070848406.1|1176819_1178016_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	81.6	3.0e-187
WP_002481255.1|1178112_1179012_+	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	75.4	4.0e-99
WP_105966651.1|1179133_1179970_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	63.8	4.2e-103
WP_002481253.1|1180021_1180375_-	CrcB family protein	NA	NA	NA	NA	NA
WP_002481252.1|1180367_1180739_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	64.5	6.1e-38
WP_002481251.1|1180799_1181108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002481250.1|1181295_1182012_+	transaldolase	NA	M1PR54	Cyanophage	35.0	3.8e-20
WP_105976125.1|1182152_1182614_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	40.9	1.4e-18
WP_060804831.1|1182588_1183029_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023016001.1|1183028_1183526_-	hypothetical protein	NA	A0A2H4PQT5	Staphylococcus_phage	42.5	1.1e-21
WP_023016000.1|1183730_1183952_+	hypothetical protein	NA	NA	NA	NA	NA
WP_105967157.1|1184125_1185442_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	31.0	1.4e-44
WP_002481245.1|1185838_1186684_+	hypothetical protein	NA	A0A1W6JNR1	Staphylococcus_phage	41.7	4.2e-42
WP_105966649.1|1186825_1188307_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	64.5	1.0e-14
WP_105977717.1|1188701_1189751_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	59.9	4.1e-119
WP_057509781.1|1189755_1190388_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	61.4	2.8e-67
WP_105966647.1|1190403_1191585_+	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	73.5	1.8e-168
WP_070626312.1|1191617_1192079_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	75.2	3.9e-58
WP_023015993.1|1192152_1193148_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	63.3	5.8e-115
WP_002481238.1|1193409_1194240_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_002481237.1|1194416_1195373_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_105966646.1|1195438_1195996_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	61.6	3.5e-61
WP_105966645.1|1195992_1196955_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	83.7	4.3e-67
WP_002481234.1|1197227_1198406_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	73.2	3.0e-163
WP_105966644.1|1198785_1201200_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	85.0	0.0e+00
WP_002481231.1|1201220_1201538_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	66.7	1.5e-32
WP_023015991.1|1201623_1202880_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	75.0	2.6e-40
>prophage 3
NZ_CP017430	Staphylococcus simulans strain MR4 chromosome, complete genome	2685102	1325383	1335457	2685102	tRNA	Klosneuvirus(33.33%)	7	NA	NA
WP_106421008.1|1325383_1327657_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.9	4.6e-75
WP_023016066.1|1327675_1328194_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	44.4	8.1e-28
WP_002481117.1|1328545_1330735_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	38.0	9.0e-12
WP_002481116.1|1330750_1331203_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_002481115.1|1331199_1332075_+	hypothetical protein	NA	A0A0N9SGH1	Paenibacillus_phage	33.1	6.8e-11
WP_105966607.1|1332400_1333675_+|tRNA	histidine--tRNA ligase	tRNA	A0A2K9L6G5	Tupanvirus	23.8	2.3e-15
WP_105966606.1|1333690_1335457_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SIS0	Klosneuvirus	33.7	9.2e-07
>prophage 4
NZ_CP017430	Staphylococcus simulans strain MR4 chromosome, complete genome	2685102	1631527	1672284	2685102	portal,terminase,capsid,head,integrase,tail	Staphylococcus_phage(40.0%)	60	1632338:1632360	1672320:1672342
WP_002480822.1|1631527_1632001_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	40.5	1.1e-26
1632338:1632360	attL	ATGATTTTTGCCTTGTGAGAATA	NA	NA	NA	NA
WP_106421026.1|1632826_1633249_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421027.1|1633248_1633806_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0U4JD08	Gordonia_phage	32.2	1.2e-05
WP_105976117.1|1634222_1634423_-	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	87.9	1.9e-25
WP_105976116.1|1634409_1634520_-	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	86.1	3.9e-09
WP_105976115.1|1634593_1634722_-	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	92.9	4.7e-14
WP_105976114.1|1635115_1635658_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105976113.1|1636367_1637840_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A2H4JAU4	uncultured_Caudovirales_phage	71.8	2.6e-220
WP_105976112.1|1637840_1638089_-	PTS mannose transporter subunit IID	NA	Q4ZD59	Staphylococcus_phage	87.8	2.2e-36
WP_106421028.1|1638228_1638528_-	DUF2951 family protein	NA	Q4ZD60	Staphylococcus_phage	80.2	6.3e-33
WP_105976111.1|1638584_1638863_-	hypothetical protein	NA	A0A2H4J771	uncultured_Caudovirales_phage	63.2	7.6e-17
WP_105976110.1|1638868_1640737_-	hypothetical protein	NA	A0A2H4JCH3	uncultured_Caudovirales_phage	45.8	4.6e-150
WP_106421029.1|1640753_1642406_-	hypothetical protein	NA	A0A2P1JUJ3	Bacillus_phage	36.3	4.7e-45
WP_106421030.1|1642416_1643346_-	hypothetical protein	NA	A0A2H4J5C4	uncultured_Caudovirales_phage	59.6	4.3e-48
WP_106421031.1|1643349_1647123_-|tail	phage tail protein	tail	H9A0P1	Staphylococcus_phage	65.0	9.8e-115
WP_106421032.1|1647145_1647460_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421033.1|1647492_1647951_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421034.1|1648018_1648576_-|tail	phage tail protein	tail	A0A1W6JQQ8	Staphylococcus_phage	33.5	5.1e-20
WP_106421035.1|1648589_1649060_-	hypothetical protein	NA	A0A2H4PQL6	Staphylococcus_phage	31.8	3.5e-14
WP_106421036.1|1649074_1649458_-	HK97 gp10 family phage protein	NA	M9NRJ3	Staphylococcus_phage	46.3	4.7e-25
WP_106421037.1|1649461_1649785_-|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_105976100.1|1649774_1650095_-|head,tail	phage head-tail adapter protein	head,tail	NA	NA	NA	NA
WP_105976099.1|1650291_1651251_-|capsid	phage capsid protein	capsid	A0A097PAW2	Streptococcus_pyogenes_phage	53.4	1.1e-35
WP_105976098.1|1651265_1651835_-	hypothetical protein	NA	I6SB44	Staphylococcus_virus	45.2	5.6e-22
WP_158257427.1|1651938_1652916_-|head	phage head morphogenesis protein	head	Q4ZC73	Staphylococcus_virus	42.0	9.5e-62
WP_142397735.1|1652893_1654246_-|portal	phage portal protein	portal	A0A1W6JQP9	Staphylococcus_phage	49.8	7.3e-121
WP_106421040.1|1654290_1655562_-|terminase	PBSX family phage terminase large subunit	terminase	Q4ZCF2	Staphylococcus_virus	93.1	2.4e-230
WP_002480794.1|1655561_1655939_-	hypothetical protein	NA	A0A1W6JP86	Staphylococcus_phage	64.0	6.7e-40
WP_106421041.1|1656017_1656563_-	hypothetical protein	NA	NA	NA	NA	NA
WP_070548334.1|1656759_1657185_-	transcriptional regulator	NA	A0A1J0MFW0	Staphylococcus_phage	80.9	2.3e-57
WP_106421042.1|1657311_1657488_-	transcriptional regulator	NA	Q4ZC79	Staphylococcus_virus	87.9	2.1e-20
WP_106421043.1|1657490_1657787_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421045.1|1658555_1658816_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158263702.1|1659096_1659273_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105976084.1|1659273_1659693_-	DUF3310 domain-containing protein	NA	Q4ZC89	Staphylococcus_virus	60.0	7.7e-21
WP_106421046.1|1659693_1660209_-	hypothetical protein	NA	Q4ZC91	Staphylococcus_virus	30.8	3.6e-12
WP_105980080.1|1660221_1660413_-	hypothetical protein	NA	Q4ZC92	Staphylococcus_virus	98.4	6.6e-28
WP_106421047.1|1660413_1660821_-	RusA family crossover junction endodeoxyribonuclease	NA	Q4ZC94	Staphylococcus_virus	91.9	6.9e-67
WP_060804512.1|1660986_1661760_-	ATP-binding protein	NA	A0A1W6JP70	Staphylococcus_phage	79.2	6.0e-104
WP_106421049.1|1661772_1662510_-	replication protein	NA	Q4ZDQ6	Staphylococcus_virus	65.4	9.0e-65
WP_106421050.1|1662555_1663038_+	hypothetical protein	NA	A0A2H4JC39	uncultured_Caudovirales_phage	61.9	9.4e-47
WP_106421051.1|1663053_1663725_-	hypothetical protein	NA	Q4ZC99	Staphylococcus_virus	86.0	4.7e-113
WP_106421052.1|1663737_1664184_-	single-stranded DNA-binding protein	NA	A0A1J0MFD7	Staphylococcus_phage	90.2	3.1e-52
WP_106421053.1|1664183_1664855_-	single-stranded DNA-binding protein	NA	A0A1J0MF78	Staphylococcus_phage	89.5	8.4e-110
WP_106421054.1|1664817_1665072_-	DUF2483 domain-containing protein	NA	Q4ZCA2	Staphylococcus_virus	96.4	6.1e-37
WP_106421055.1|1665064_1665289_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421056.1|1665388_1665604_-	hypothetical protein	NA	Q4ZCA4	Staphylococcus_virus	90.1	3.3e-28
WP_002480770.1|1665616_1665919_-	DUF771 domain-containing protein	NA	Q4ZCA6	Staphylococcus_virus	98.0	6.7e-51
WP_106421057.1|1666033_1666357_+	hypothetical protein	NA	NA	NA	NA	NA
WP_106421058.1|1666550_1666778_-	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	71.6	2.0e-23
WP_106421059.1|1666778_1667552_-	phage antirepressor KilAC domain-containing protein	NA	Q4ZCB0	Staphylococcus_virus	99.2	1.5e-142
WP_105976070.1|1667667_1667904_+	hypothetical protein	NA	Q4ZBN3	Staphylococcus_phage	84.6	6.0e-31
WP_106421060.1|1668072_1668312_-	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.9	3.9e-38
WP_105996454.1|1668504_1668837_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JC44	uncultured_Caudovirales_phage	94.5	1.0e-47
WP_106421061.1|1668850_1669324_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4J4F2	uncultured_Caudovirales_phage	65.4	1.1e-55
WP_105976065.1|1669310_1669952_+	DUF4352 domain-containing protein	NA	NA	NA	NA	NA
WP_158257428.1|1670130_1670271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_106421062.1|1670365_1670881_+	hypothetical protein	NA	A0A0H3U494	Staphylococcus_phage	48.0	3.5e-39
WP_106421063.1|1670882_1671191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_106421064.1|1671255_1672284_+|integrase	site-specific integrase	integrase	Q4ZCC1	Staphylococcus_virus	98.8	5.1e-191
1672320:1672342	attR	ATGATTTTTGCCTTGTGAGAATA	NA	NA	NA	NA
>prophage 5
NZ_CP017430	Staphylococcus simulans strain MR4 chromosome, complete genome	2685102	1944917	1953339	2685102		Prochlorococcus_phage(33.33%)	9	NA	NA
WP_023015953.1|1944917_1945484_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.3	2.6e-32
WP_060803898.1|1945480_1946521_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.1	1.6e-70
WP_002480500.1|1946525_1947947_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	30.8	5.6e-47
WP_002480499.1|1947925_1950115_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.4	7.4e-139
WP_070626693.1|1950107_1950779_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_002480497.1|1950778_1951039_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002480496.1|1951038_1951743_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	42.9	1.1e-48
WP_002480495.1|1951742_1952870_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_002480494.1|1952856_1953339_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	4.7e-22
>prophage 6
NZ_CP017430	Staphylococcus simulans strain MR4 chromosome, complete genome	2685102	2194398	2207641	2685102	portal,terminase,capsid,head,protease,integrase,tail	Staphylococcus_phage(46.15%)	19	2202269:2202283	2207104:2207118
WP_105977691.1|2194398_2194707_-|head	phage head closure protein	head	NA	NA	NA	NA
WP_105977690.1|2194886_2196530_-|terminase	terminase large subunit	terminase	A0A290GJW3	Caldibacillus_phage	50.8	1.0e-156
WP_106421088.1|2196522_2196843_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105977689.1|2196977_2197271_-	HNH endonuclease	NA	R9TNN2	Paenibacillus_phage	43.8	7.3e-18
WP_060804152.1|2197263_2197545_-|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_096754297.1|2197610_2198843_-|capsid	phage major capsid protein	capsid	NA	NA	NA	NA
WP_105977688.1|2198844_2199411_-|head,protease	HK97 family phage prohead protease	head,protease	Q8SBP9	Clostridium_phage	33.8	2.3e-12
WP_105977695.1|2199397_2200537_-|portal	phage portal protein	portal	A0A1L2BY94	Clostridium_phage	36.0	3.3e-58
WP_106421089.1|2200803_2201145_-	pathogenicity island protein	NA	A0A1W6JQD5	Staphylococcus_phage	70.5	2.2e-42
WP_105977686.1|2201393_2202893_-	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	73.5	3.0e-216
2202269:2202283	attL	TTTGGTTATACCATT	NA	NA	NA	NA
WP_158256891.1|2202889_2203792_-	mobile element-associated protein	NA	A0A1W6JQL5	Staphylococcus_phage	42.6	2.9e-57
WP_105977684.1|2203853_2204129_-	DUF1474 family protein	NA	A0A1W6JPG5	Staphylococcus_phage	51.6	4.0e-18
WP_105977683.1|2204128_2204422_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105977682.1|2204424_2204628_-	pathogenicity island protein	NA	A0A2H4JD47	uncultured_Caudovirales_phage	74.6	1.1e-20
WP_105977681.1|2204644_2204890_-	DUF771 domain-containing protein	NA	NA	NA	NA	NA
WP_105977680.1|2204893_2205112_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	54.2	2.3e-13
WP_105977679.1|2205274_2205976_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JH10	uncultured_Caudovirales_phage	51.7	3.2e-51
WP_105977678.1|2205995_2207054_+|integrase	site-specific integrase	integrase	A0A1W6JQE7	Staphylococcus_phage	42.7	1.7e-64
WP_105966443.1|2207389_2207641_-	hypothetical protein	NA	C8CH40	Staphylococcus_phage	50.6	2.8e-18
2207104:2207118	attR	AATGGTATAACCAAA	NA	NA	NA	NA
>prophage 7
NZ_CP017430	Staphylococcus simulans strain MR4 chromosome, complete genome	2685102	2264134	2276614	2685102		uncultured_Caudovirales_phage(50.0%)	10	NA	NA
WP_031262609.1|2264134_2265103_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.4	7.8e-133
WP_002481524.1|2265408_2266383_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	90.7	2.1e-170
WP_023015386.1|2266495_2268601_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	88.2	0.0e+00
WP_023015387.1|2268563_2268965_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	65.4	1.8e-43
WP_002481521.1|2269849_2270737_+	DMT family transporter	NA	NA	NA	NA	NA
WP_105977676.1|2270739_2271243_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.1	6.6e-51
WP_002481519.1|2271425_2272949_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	37.7	7.1e-72
WP_002481518.1|2273243_2274746_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.3	3.0e-67
WP_002481517.1|2274871_2275408_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_002481516.1|2275549_2276614_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.2	2.2e-19
>prophage 1
NZ_CP017431	Staphylococcus simulans strain MR4 plasmid unnamed4, complete sequence	147416	24359	52312	147416	transposase	Staphylococcus_phage(63.64%)	29	NA	NA
WP_106421256.1|24359_24992_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.0	9.3e-119
WP_106421255.1|25058_25655_-	NDxxF motif lipoprotein	NA	NA	NA	NA	NA
WP_159079679.1|25666_26227_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_106421253.1|26219_26543_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_106421252.1|26733_27390_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159079678.1|27404_27545_+	hypothetical protein	NA	NA	NA	NA	NA
WP_106421251.1|27604_30178_+	protein kinase/lanthionine synthetase C family protein	NA	NA	NA	NA	NA
WP_106421250.1|30212_30332_+	SapB/AmfS family lantipeptide	NA	NA	NA	NA	NA
WP_106421250.1|30351_30471_+	SapB/AmfS family lantipeptide	NA	NA	NA	NA	NA
WP_106421250.1|30490_30610_+	SapB/AmfS family lantipeptide	NA	NA	NA	NA	NA
WP_106421249.1|30827_32531_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	35.9	2.3e-79
WP_159079677.1|32550_32706_+	hypothetical protein	NA	NA	NA	NA	NA
WP_106421248.1|32965_33193_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421247.1|33375_33984_-	recombinase family protein	NA	G8I4U3	Mycobacterium_phage	30.2	5.0e-13
WP_106421246.1|34601_35159_-	hypothetical protein	NA	A0A0N9SJ02	Staphylococcus_phage	50.8	4.3e-27
WP_106421245.1|35508_36183_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	95.1	6.6e-123
WP_106421450.1|37117_38311_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_023016133.1|38741_38942_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	61.9	2.5e-17
WP_106421244.1|39165_39840_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	94.2	1.6e-121
WP_106421243.1|40559_41894_+|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	47.2	8.0e-112
WP_106421242.1|42035_42416_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421240.1|43133_43808_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.2	1.7e-126
WP_106421239.1|43839_44730_+	protein rep	NA	NA	NA	NA	NA
WP_106421238.1|45880_46447_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421237.1|46896_47718_+	protein rep	NA	NA	NA	NA	NA
WP_103370613.1|47752_48427_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	96.9	7.1e-125
WP_105988897.1|49698_50244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_106421234.1|50782_51628_+	protein rep	NA	NA	NA	NA	NA
WP_103370613.1|51637_52312_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	96.9	7.1e-125
>prophage 2
NZ_CP017431	Staphylococcus simulans strain MR4 plasmid unnamed4, complete sequence	147416	66652	106188	147416	transposase	Staphylococcus_phage(58.33%)	40	NA	NA
WP_103370613.1|66652_67327_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	96.9	7.1e-125
WP_000700648.1|68167_68653_+	lincosamide nucleotidyltransferase Lnu(A)	NA	A0A2K5B286	Erysipelothrix_phage	31.2	2.8e-14
WP_106421263.1|69339_69765_-	protein rep	NA	NA	NA	NA	NA
WP_103370613.1|69812_70487_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	96.9	7.1e-125
WP_106421216.1|70634_71579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421215.1|71723_72398_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	95.1	3.9e-123
WP_106421185.1|72528_72729_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	61.9	2.5e-17
WP_106421213.1|73408_73615_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159079676.1|73780_73918_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002446825.1|76085_76187_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_106421211.1|76300_76615_-	DUF4176 domain-containing protein	NA	A0A1X9I6T6	Streptococcus_phage	46.4	4.7e-15
WP_002500713.1|76625_77252_-	DUF443 family protein	NA	NA	NA	NA	NA
WP_106421209.1|78171_79164_+	protein rep	NA	NA	NA	NA	NA
WP_106421208.1|79811_80117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_106421207.1|80308_80644_-	SdpI family protein	NA	NA	NA	NA	NA
WP_106421206.1|82633_83371_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_106421205.1|83367_84120_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023016193.1|84120_85029_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	41.6	1.1e-43
WP_159079675.1|85041_85728_-	ATP-binding cassette domain-containing protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	32.2	2.6e-10
WP_106421203.1|88263_88602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011276570.1|88606_88792_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_106421202.1|88929_89226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421201.1|89228_89528_-	DUF2089 family protein	NA	NA	NA	NA	NA
WP_106421200.1|89963_90638_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	97.3	2.4e-125
WP_106421198.1|90987_91185_+	hypothetical protein	NA	NA	NA	NA	NA
WP_106421197.1|91232_91586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_108738924.1|92150_92243_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_106421195.1|92426_93260_+	hypothetical protein	NA	NA	NA	NA	NA
WP_106421194.1|93473_94148_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	96.9	1.6e-124
WP_106421193.1|94336_94795_-	DUF3021 domain-containing protein	NA	NA	NA	NA	NA
WP_106421192.1|94791_95232_-	LytTR family transcriptional regulator	NA	NA	NA	NA	NA
WP_105977920.1|95909_96041_-	beta-class phenol-soluble modulin	NA	NA	NA	NA	NA
WP_106421191.1|97007_97952_+	DnaD domain protein	NA	Q9MCM7	Streptococcus_virus	30.3	2.4e-22
WP_106421451.1|97975_98203_+	hypothetical protein	NA	NA	NA	NA	NA
WP_108738923.1|99790_100732_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_106421262.1|102446_102599_+	ParA family protein	NA	NA	NA	NA	NA
WP_106421189.1|102720_102960_-	hypothetical protein	NA	NA	NA	NA	NA
WP_159079674.1|103854_104013_+	hypothetical protein	NA	NA	NA	NA	NA
WP_106421188.1|104168_105062_+	hypothetical protein	NA	NA	NA	NA	NA
WP_106421187.1|105513_106188_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.2	7.6e-127
