assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003008615.1_ASM300861v1	NZ_CP027657	Pseudomonas mendocina strain NEB698 chromosome, complete genome	1	2442266-2442477	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	cas3,csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,WYL	Type I-F	AATTTCTGAGCTGCCTACACGGCAGTGAAG,ATTTCTGAGCTGCCTACACGGCAGTGAAGG,ATTTCTGAGCTGCCTACACGGCAGTGAAGGC	30,30,31	0	0	NA	NA	I-F:I-F:I-F	3,3,2	3	TypeI-F	cas3,csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,WYL	NA,NA|320aa|down_8|NZ_CP027657.1_2453259_2454219_+	NA|603aa|up_9|NZ_CP027657.1_2431872_2433681_+	PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated	NA|243aa|up_8|NZ_CP027657.1_2433931_2434660_-	cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|354aa|up_7|NZ_CP027657.1_2434839_2435901_-	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B	NA|169aa|up_6|NZ_CP027657.1_2435973_2436480_-	pfam04712, Radial_spoke, Radial spokehead-like protein	NA|332aa|up_5|NZ_CP027657.1_2436535_2437531_-	pfam13593, SBF_like, SBF-like CPA transporter family (DUF4137)	NA|264aa|up_4|NZ_CP027657.1_2437612_2438404_+	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain	NA|91aa|up_3|NZ_CP027657.1_2438667_2438940_-	pfam09526, DUF2387, Probable metal-binding protein (DUF2387)	NA|683aa|up_2|NZ_CP027657.1_2438936_2440985_-	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP)	NA|181aa|up_1|NZ_CP027657.1_2441117_2441660_+	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|163aa|up_0|NZ_CP027657.1_2441671_2442160_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	cas6f|188aa|down_0|NZ_CP027657.1_2442605_2443169_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|343aa|down_1|NZ_CP027657.1_2443171_2444200_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|325aa|down_2|NZ_CP027657.1_2444212_2445187_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|439aa|down_3|NZ_CP027657.1_2445173_2446490_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	NA|429aa|down_4|NZ_CP027657.1_2446816_2448103_-	cd17809, HipA_So_like, type II toxin-antitoxin sytem toxin HipA from Shewanella oneidensis and similar proteins	NA|84aa|down_5|NZ_CP027657.1_2448099_2448351_-	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	cas3f|1080aa|down_6|NZ_CP027657.1_2448476_2451716_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|323aa|down_7|NZ_CP027657.1_2451712_2452681_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|320aa|down_8|NZ_CP027657.1_2453259_2454219_+	NA	NA|457aa|down_9|NZ_CP027657.1_2454228_2455599_-	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
GCF_003008615.1_ASM300861v1	NZ_CP027657	Pseudomonas mendocina strain NEB698 chromosome, complete genome	2	2452736-2453003	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	cas3,csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,WYL	Type I-F	TTTCTGAGCTGCCTGCACGGCAGTGAAG,TTTCTGAGCTGCCTGCACGGCAGTGAAG,TTTCTGAGCTGCCTGCACGGCAGTGAAG	28,28,28	0	0	NA	NA	I-F:I-F:I-F	4,4,3	4	TypeI-F	cas3,csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,WYL	NA,NA|320aa|down_0|NZ_CP027657.1_2453259_2454219_+,NA|141aa|down_7|NZ_CP027657.1_2461338_2461761_+	NA|181aa|up_9|NZ_CP027657.1_2441117_2441660_+	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|163aa|up_8|NZ_CP027657.1_2441671_2442160_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	cas6f|188aa|up_7|NZ_CP027657.1_2442605_2443169_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|343aa|up_6|NZ_CP027657.1_2443171_2444200_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|325aa|up_5|NZ_CP027657.1_2444212_2445187_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|439aa|up_4|NZ_CP027657.1_2445173_2446490_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	NA|429aa|up_3|NZ_CP027657.1_2446816_2448103_-	cd17809, HipA_So_like, type II toxin-antitoxin sytem toxin HipA from Shewanella oneidensis and similar proteins	NA|84aa|up_2|NZ_CP027657.1_2448099_2448351_-	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	cas3f|1080aa|up_1|NZ_CP027657.1_2448476_2451716_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|323aa|up_0|NZ_CP027657.1_2451712_2452681_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|320aa|down_0|NZ_CP027657.1_2453259_2454219_+	NA	NA|457aa|down_1|NZ_CP027657.1_2454228_2455599_-	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|653aa|down_2|NZ_CP027657.1_2455610_2457569_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|390aa|down_3|NZ_CP027657.1_2457562_2458732_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|216aa|down_4|NZ_CP027657.1_2459044_2459692_+	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065	NA|77aa|down_5|NZ_CP027657.1_2459858_2460089_-	pfam06649, DUF1161, Protein of unknown function (DUF1161)	NA|354aa|down_6|NZ_CP027657.1_2460153_2461215_-	pfam10023, Aminopep, Putative aminopeptidase	NA|141aa|down_7|NZ_CP027657.1_2461338_2461761_+	NA	NA|142aa|down_8|NZ_CP027657.1_2461992_2462418_-	TIGR03562, osmo_induc_OsmC, peroxiredoxin, OsmC subfamily	NA|334aa|down_9|NZ_CP027657.1_2462597_2463599_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1
GCF_003008615.1_ASM300861v1	NZ_CP027657	Pseudomonas mendocina strain NEB698 chromosome, complete genome	3	2608883-2608994	3	CRISPRCasFinder	no		cas3,csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,WYL	Orphan	TGCAATGTGGGAGGGGCTTTAGCCGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,WYL	NA,NA|80aa|down_1|NZ_CP027657.1_2609831_2610071_-,NA|95aa|down_4|NZ_CP027657.1_2612236_2612521_+	NA|536aa|up_9|NZ_CP027657.1_2596181_2597789_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|308aa|up_8|NZ_CP027657.1_2597799_2598723_-	cd08412, PBP2_PAO1_like, The C-terminal substrate-binding domain of putative LysR-type transcriptional regulator PAO1-like, a member of the type 2 periplasmic binding fold protein superfamily	NA|498aa|up_7|NZ_CP027657.1_2599186_2600680_+	cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like	NA|458aa|up_6|NZ_CP027657.1_2600804_2602178_+	PRK12403, PRK12403, aspartate aminotransferase family protein	NA|329aa|up_5|NZ_CP027657.1_2602381_2603368_+	cd13563, PBP2_SsuA_like_6, Putative substrate binding domain of sulfonate binding protein-like, a member of the type 2 periplasmic binding protein fold	NA|268aa|up_4|NZ_CP027657.1_2603510_2604314_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|278aa|up_3|NZ_CP027657.1_2604301_2605135_+	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|529aa|up_2|NZ_CP027657.1_2605136_2606723_+	PRK02106, PRK02106, choline dehydrogenase; Validated	NA|310aa|up_1|NZ_CP027657.1_2606730_2607660_-	pfam00892, EamA, EamA-like transporter family	NA|304aa|up_0|NZ_CP027657.1_2607763_2608675_+	cd08421, PBP2_LTTR_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|258aa|down_0|NZ_CP027657.1_2609027_2609801_-	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain	NA|80aa|down_1|NZ_CP027657.1_2609831_2610071_-	NA	NA|406aa|down_2|NZ_CP027657.1_2610218_2611436_+	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters	NA|210aa|down_3|NZ_CP027657.1_2611432_2612062_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|95aa|down_4|NZ_CP027657.1_2612236_2612521_+	NA	NA|412aa|down_5|NZ_CP027657.1_2612740_2613976_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|395aa|down_6|NZ_CP027657.1_2614110_2615295_-	pfam04143, Sulf_transp, Sulphur transport	NA|309aa|down_7|NZ_CP027657.1_2615547_2616474_-	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|410aa|down_8|NZ_CP027657.1_2616577_2617807_-	cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C	NA|320aa|down_9|NZ_CP027657.1_2617803_2618763_-	cd13557, PBP2_SsuA, Substrate binding domain of sulfonate binding protein, a member of the type 2 periplasmic binding fold superfamily
GCF_003008615.1_ASM300861v1	NZ_CP027657	Pseudomonas mendocina strain NEB698 chromosome, complete genome	4	2717421-2717582	4	CRISPRCasFinder	no		cas3,csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,WYL	Orphan	GAATAAAGAAGGGGATTCCCCGGCCTGCCTGTACCAAGGTCCCCGAAACGGGT	53	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,WYL	NA,NA|194aa|down_2|NZ_CP027657.1_2721459_2722041_-,NA|256aa|down_4|NZ_CP027657.1_2723277_2724045_-,NA|153aa|down_6|NZ_CP027657.1_2724832_2725291_-	NA|245aa|up_9|NZ_CP027657.1_2708173_2708908_+	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein	NA|252aa|up_8|NZ_CP027657.1_2708991_2709747_+	COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms]	NA|252aa|up_7|NZ_CP027657.1_2709885_2710641_+	COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms]	NA|437aa|up_6|NZ_CP027657.1_2710797_2712108_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|410aa|up_5|NZ_CP027657.1_2712136_2713366_-	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	NA|512aa|up_4|NZ_CP027657.1_2713545_2715081_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|138aa|up_3|NZ_CP027657.1_2715228_2715642_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|87aa|up_2|NZ_CP027657.1_2715643_2715904_+	TIGR02181, GRX_bact, Glutaredoxin, GrxC family	NA|164aa|up_1|NZ_CP027657.1_2715932_2716424_+	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated	NA|156aa|up_0|NZ_CP027657.1_2716516_2716984_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|815aa|down_0|NZ_CP027657.1_2717753_2720198_-	pfam01804, Penicil_amidase, Penicillin amidase	NA|343aa|down_1|NZ_CP027657.1_2720252_2721281_+	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term	NA|194aa|down_2|NZ_CP027657.1_2721459_2722041_-	NA	NA|314aa|down_3|NZ_CP027657.1_2722168_2723110_+	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|256aa|down_4|NZ_CP027657.1_2723277_2724045_-	NA	NA|208aa|down_5|NZ_CP027657.1_2724157_2724781_+	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]	NA|153aa|down_6|NZ_CP027657.1_2724832_2725291_-	NA	NA|164aa|down_7|NZ_CP027657.1_2725570_2726062_+	pfam04463, DUF523, Protein of unknown function (DUF523)	NA|410aa|down_8|NZ_CP027657.1_2726412_2727642_-	PRK11790, PRK11790, phosphoglycerate dehydrogenase	NA|464aa|down_9|NZ_CP027657.1_2727823_2729215_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]
GCF_003008615.1_ASM300861v1	NZ_CP027657	Pseudomonas mendocina strain NEB698 chromosome, complete genome	5	4325338-4325905	5,3,3	CRISPRCasFinder,CRT,PILER-CR	no		cas3,csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,WYL	Orphan	TTTCTGAGCTGCCTACACGGCAGTGAAG,TTTCTGAGCTGCCTACACGGCAGTGAAG,TTTCTGAGCTGCCTACACGGCAGTGAAG	28,28,28	0	0	NA	NA	I-F:I-F:I-F	9,9,8	9	Orphan	cas3,csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,WYL	NA,NA	NA|290aa|up_9|NZ_CP027657.1_4303968_4304838_+	pfam06007, PhnJ, Phosphonate metabolism protein PhnJ	NA|270aa|up_8|NZ_CP027657.1_4304834_4305644_+	PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional	NA|239aa|up_7|NZ_CP027657.1_4305825_4306542_+	COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|382aa|up_6|NZ_CP027657.1_4306531_4307677_+	PRK15446, PRK15446, phosphonate metabolism protein PhnM; Provisional	NA|189aa|up_5|NZ_CP027657.1_4307676_4308243_+	COG3709, COG3709, Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]	NA|255aa|up_4|NZ_CP027657.1_4308233_4308998_+	PRK11244, phnP, carbon-phosphorus lyase complex accessory protein; Provisional	NA|402aa|up_3|NZ_CP027657.1_4309081_4310287_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|178aa|up_2|NZ_CP027657.1_4310494_4311028_-	PRK07037, PRK07037, extracytoplasmic-function sigma-70 factor; Validated	NA|227aa|up_1|NZ_CP027657.1_4311277_4311958_+	COG3208, GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|4342aa|up_0|NZ_CP027657.1_4312026_4325052_+	PRK05691, PRK05691, peptide synthase; Validated	NA|465aa|down_0|NZ_CP027657.1_4326170_4327565_+	PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional	NA|81aa|down_1|NZ_CP027657.1_4328004_4328247_+	COG3251, COG3251, Uncharacterized protein conserved in bacteria [Function unknown]	NA|247aa|down_2|NZ_CP027657.1_4328249_4328990_+	COG3208, GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|318aa|down_3|NZ_CP027657.1_4329022_4329976_-	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family	NA|3679aa|down_4|NZ_CP027657.1_4330121_4341158_+	PRK12316, PRK12316, peptide synthase; Provisional	NA|1124aa|down_5|NZ_CP027657.1_4341159_4344531_+	PRK12316, PRK12316, peptide synthase; Provisional	NA|3608aa|down_6|NZ_CP027657.1_4344543_4355367_+	PRK12316, PRK12316, peptide synthase; Provisional	NA|797aa|down_7|NZ_CP027657.1_4355660_4358051_+	COG4773, FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism]	NA|552aa|down_8|NZ_CP027657.1_4358578_4360234_-	TIGR01194, ATP-binding_protein_SyrD, cyclic peptide transporter	NA|276aa|down_9|NZ_CP027657.1_4360583_4361411_+	cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART)
