assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003017455.1_ASM301745v1	NZ_CP027221	Escherichia coli strain 2015C-3101 chromosome, complete genome	1	3999406-3999739	1,1,1	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,cas14i,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,4,4	5	TypeI-E	DEDDh,cas14i,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|254aa|up_9|NZ_CP027221.1_3991280_3992042_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP027221.1_3992022_3993072_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP027221.1_3993068_3993548_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP027221.1_3993547_3994258_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP027221.1_3994276_3994588_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP027221.1_3994781_3995105_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP027221.1_3995154_3995760_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP027221.1_3995746_3997186_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP027221.1_3997187_3998096_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP027221.1_3998347_3999385_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP027221.1_3999835_4000129_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP027221.1_4000128_4001049_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas5|249aa|down_2|NZ_CP027221.1_4001676_4002423_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_3|NZ_CP027221.1_4002433_4003489_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|180aa|down_4|NZ_CP027221.1_4003500_4004040_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_5|NZ_CP027221.1_4004036_4005599_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_6|NZ_CP027221.1_4005696_4008396_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_7|NZ_CP027221.1_4008589_4008742_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_8|NZ_CP027221.1_4009006_4009741_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP027221.1_4009814_4011527_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_003017455.1_ASM301745v1	NZ_CP027221	Escherichia coli strain 2015C-3101 chromosome, complete genome	2	4025440-4025834	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,cas14i,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas5,cas7,cse2gr11,cas8e	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAAC,CGGTTTATCCCCGCTGGCGCGGGGAACA	29,27,28	0	0	NA	NA	I-E:I-E:I-E	6,6,5	6	Unclear	DEDDh,cas14i,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas5,cas7,cse2gr11,cas8e	NA,NA|47aa|down_1|NZ_CP027221.1_4026983_4027124_+	NA|424aa|up_9|NZ_CP027221.1_4014084_4015356_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP027221.1_4015346_4015607_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP027221.1_4015623_4016199_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP027221.1_4016346_4017207_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP027221.1_4017203_4017983_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|NZ_CP027221.1_4017960_4019298_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP027221.1_4019391_4020846_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP027221.1_4020915_4021701_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP027221.1_4022019_4023297_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP027221.1_4023322_4024801_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP027221.1_4026173_4026845_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP027221.1_4026983_4027124_+	NA	NA|291aa|down_2|NZ_CP027221.1_4027137_4028010_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP027221.1_4028069_4029368_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP027221.1_4029455_4031093_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP027221.1_4031320_4032112_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP027221.1_4032182_4032518_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP027221.1_4032517_4032766_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP027221.1_4032843_4035078_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|919aa|down_9|NZ_CP027221.1_4036482_4039239_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional
GCF_003017455.1_ASM301745v1	NZ_CP027221	Escherichia coli strain 2015C-3101 chromosome, complete genome	3	4142955-4143044	3	CRISPRCasFinder	no		DEDDh,cas14i,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas5,cas7,cse2gr11,cas8e	Orphan	AAAAATGTCTAAAGCCCCTTTAGATAAAAAT	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14i,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas5,cas7,cse2gr11,cas8e	NA|124aa|up_9|NZ_CP027221.1_4137386_4137758_-,NA|72aa|up_8|NZ_CP027221.1_4137760_4137976_-,NA|70aa|up_7|NZ_CP027221.1_4138854_4139064_-,NA|103aa|up_6|NZ_CP027221.1_4139063_4139372_-,NA|74aa|up_5|NZ_CP027221.1_4139371_4139593_-,NA|127aa|up_4|NZ_CP027221.1_4139634_4140015_-,NA|69aa|up_3|NZ_CP027221.1_4140136_4140343_-,NA|86aa|up_2|NZ_CP027221.1_4140339_4140597_-,NA|222aa|up_1|NZ_CP027221.1_4140609_4141275_-,NA|61aa|up_0|NZ_CP027221.1_4141422_4141605_-,NA|69aa|down_2|NZ_CP027221.1_4145531_4145738_-	NA|124aa|up_9|NZ_CP027221.1_4137386_4137758_-	NA	NA|72aa|up_8|NZ_CP027221.1_4137760_4137976_-	NA	NA|70aa|up_7|NZ_CP027221.1_4138854_4139064_-	NA	NA|103aa|up_6|NZ_CP027221.1_4139063_4139372_-	NA	NA|74aa|up_5|NZ_CP027221.1_4139371_4139593_-	NA	NA|127aa|up_4|NZ_CP027221.1_4139634_4140015_-	NA	NA|69aa|up_3|NZ_CP027221.1_4140136_4140343_-	NA	NA|86aa|up_2|NZ_CP027221.1_4140339_4140597_-	NA	NA|222aa|up_1|NZ_CP027221.1_4140609_4141275_-	NA	NA|61aa|up_0|NZ_CP027221.1_4141422_4141605_-	NA	NA|184aa|down_0|NZ_CP027221.1_4143973_4144525_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|107aa|down_1|NZ_CP027221.1_4145177_4145498_+	pfam13992, YecR, YecR-like lipoprotein	NA|69aa|down_2|NZ_CP027221.1_4145531_4145738_-	NA	NA|252aa|down_3|NZ_CP027221.1_4146387_4147143_-	PRK10871, nlpD, murein hydrolase activator NlpD	NA|766aa|down_4|NZ_CP027221.1_4147557_4149855_+	PRK09970, PRK09970, xanthine dehydrogenase subunit XdhA; Provisional	NA|293aa|down_5|NZ_CP027221.1_4149865_4150744_+	PRK09971, PRK09971, xanthine dehydrogenase subunit XdhB; Provisional	NA|160aa|down_6|NZ_CP027221.1_4150740_4151220_+	PRK09908, PRK09908, xanthine dehydrogenase iron sulfur-binding subunit XdhC	NA|593aa|down_7|NZ_CP027221.1_4151259_4153038_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|396aa|down_8|NZ_CP027221.1_4153516_4154704_+	PRK07200, PRK07200, aspartate/ornithine carbamoyltransferase family protein; Validated	NA|399aa|down_9|NZ_CP027221.1_4154761_4155958_+	TIGR03528, 2_3_DAP_am_ly, diaminopropionate ammonia-lyase
