assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003018055.1_ASM301805v1	NZ_CP027442	Escherichia coli strain 2013C-3252 chromosome, complete genome	1	541358-541449	1	CRISPRCasFinder	no		cas3,DEDDh,c2c9_V-U4,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,c2c9_V-U4,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|70aa|up_9|NZ_CP027442.1_530608_530818_-,NA	NA|70aa|up_9|NZ_CP027442.1_530608_530818_-	NA	NA|1321aa|up_8|NZ_CP027442.1_530872_534835_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP027442.1_534874_535513_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP027442.1_535800_536892_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP027442.1_536891_537584_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP027442.1_537595_537982_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP027442.1_537989_538790_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP027442.1_538799_539390_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP027442.1_539400_539895_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP027442.1_539915_541244_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP027442.1_541872_542469_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP027442.1_542489_542717_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP027442.1_542754_543996_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|420aa|down_3|NZ_CP027442.1_544287_545547_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP027442.1_545806_546727_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP027442.1_546726_547032_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP027442.1_547124_547724_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP027442.1_547720_550267_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP027442.1_550266_551439_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP027442.1_551568_552261_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_003018055.1_ASM301805v1	NZ_CP027442	Escherichia coli strain 2013C-3252 chromosome, complete genome	2	2284068-2284340	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,DEDDh,c2c9_V-U4,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,4,4	4	TypeI-E	cas3,DEDDh,c2c9_V-U4,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|254aa|up_9|NZ_CP027442.1_2275880_2276642_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP027442.1_2276622_2277672_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP027442.1_2277668_2278148_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP027442.1_2278147_2278858_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP027442.1_2278876_2279188_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP027442.1_2279381_2279705_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP027442.1_2279754_2280360_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP027442.1_2280359_2281787_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP027442.1_2281788_2282697_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP027442.1_2282948_2283986_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP027442.1_2284436_2284730_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP027442.1_2284729_2285650_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP027442.1_2285646_2286297_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP027442.1_2286278_2287025_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP027442.1_2287035_2288091_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|163aa|down_5|NZ_CP027442.1_2288153_2288642_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP027442.1_2288638_2290201_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP027442.1_2290298_2292998_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP027442.1_2293191_2293344_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP027442.1_2293608_2294343_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_003018055.1_ASM301805v1	NZ_CP027442	Escherichia coli strain 2013C-3252 chromosome, complete genome	3	2310042-2310619	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	cas3,DEDDh,c2c9_V-U4,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGA,CGGTTTATCCCCGCTGGCGCGGGGAAC	29,25,27	0	0	NA	NA	I-E:I-E:I-E	9,9,9	9	Unclear	cas3,DEDDh,c2c9_V-U4,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|47aa|down_1|NZ_CP027442.1_2311768_2311909_+	NA|87aa|up_9|NZ_CP027442.1_2299948_2300209_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_8|NZ_CP027442.1_2300225_2300801_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_7|NZ_CP027442.1_2300948_2301809_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_6|NZ_CP027442.1_2301805_2302585_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_5|NZ_CP027442.1_2302562_2303900_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_4|NZ_CP027442.1_2303993_2305448_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|227aa|up_3|NZ_CP027442.1_2305517_2306198_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|32aa|up_2|NZ_CP027442.1_2306207_2306303_-	PRK06935, PRK06935, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	NA|426aa|up_1|NZ_CP027442.1_2306620_2307898_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP027442.1_2307924_2309403_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP027442.1_2310958_2311630_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP027442.1_2311768_2311909_+	NA	NA|291aa|down_2|NZ_CP027442.1_2311922_2312795_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP027442.1_2312854_2314153_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP027442.1_2314240_2315878_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP027442.1_2316105_2316897_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP027442.1_2316967_2317303_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP027442.1_2317302_2317551_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP027442.1_2317628_2319863_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP027442.1_2319910_2321212_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
GCF_003018055.1_ASM301805v1	NZ_CP027442	Escherichia coli strain 2013C-3252 chromosome, complete genome	4	4036802-4036948	4	CRISPRCasFinder	no		cas3,DEDDh,c2c9_V-U4,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	51	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,c2c9_V-U4,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|504aa|up_5|NZ_CP027442.1_4028069_4029581_+,NA|529aa|down_7|NZ_CP027442.1_4046642_4048229_-	NA|132aa|up_9|NZ_CP027442.1_4025446_4025842_-	cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|238aa|up_8|NZ_CP027442.1_4025972_4026686_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_7|NZ_CP027442.1_4026756_4027350_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_6|NZ_CP027442.1_4027494_4027947_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|504aa|up_5|NZ_CP027442.1_4028069_4029581_+	NA	NA|338aa|up_4|NZ_CP027442.1_4029749_4030763_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_3|NZ_CP027442.1_4030924_4031341_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_2|NZ_CP027442.1_4031386_4031890_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|952aa|up_1|NZ_CP027442.1_4033332_4036188_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP027442.1_4036187_4036631_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP027442.1_4036984_4038496_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP027442.1_4038762_4039863_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP027442.1_4039862_4040945_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP027442.1_4041063_4042566_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP027442.1_4042695_4043715_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|421aa|down_5|NZ_CP027442.1_4044158_4045421_+	PRK09692, PRK09692, integrase; Provisional	NA|280aa|down_6|NZ_CP027442.1_4045664_4046504_-	PRK11001, mtlR, MltR family transcriptional regulator	NA|529aa|down_7|NZ_CP027442.1_4046642_4048229_-	NA	NA|226aa|down_8|NZ_CP027442.1_4048518_4049196_+	pfam01527, HTH_Tnp_1, Transposase	NA|116aa|down_9|NZ_CP027442.1_4049195_4049543_+	pfam05717, TnpB_IS66, IS66 Orf2 like protein
