assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003018255.1_ASM301825v1	NZ_CP027440	Escherichia coli strain 2012C-4502 chromosome, complete genome	1	645367-645497	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	CCGGGTTAACCCAATCGGCTTCAGGCTGCTGCGGTTGGTGT	41	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|224aa|up_8|NZ_CP027440.1_639272_639944_-,NA|142aa|up_7|NZ_CP027440.1_639955_640381_-,NA|82aa|up_4|NZ_CP027440.1_641291_641537_-,NA|361aa|up_0|NZ_CP027440.1_644231_645314_-,NA|91aa|down_3|NZ_CP027440.1_647484_647757_+,NA|238aa|down_4|NZ_CP027440.1_647760_648474_+,NA|119aa|down_5|NZ_CP027440.1_648505_648862_+,NA|129aa|down_7|NZ_CP027440.1_649499_649886_+	NA|125aa|up_9|NZ_CP027440.1_638878_639253_+	pfam05656, DUF805, Protein of unknown function (DUF805)	NA|224aa|up_8|NZ_CP027440.1_639272_639944_-	NA	NA|142aa|up_7|NZ_CP027440.1_639955_640381_-	NA	NA|110aa|up_6|NZ_CP027440.1_640609_640939_+	pfam05973, Gp49, Phage derived protein Gp49-like (DUF891)	NA|103aa|up_5|NZ_CP027440.1_640928_641237_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|82aa|up_4|NZ_CP027440.1_641291_641537_-	NA	NA|225aa|up_3|NZ_CP027440.1_641535_642210_+	pfam13643, DUF4145, Domain of unknown function (DUF4145)	NA|144aa|up_2|NZ_CP027440.1_642242_642674_-	pfam06163, DUF977, Bacterial protein of unknown function (DUF977)	NA|257aa|up_1|NZ_CP027440.1_642688_643459_-	pfam07789, DUF1627, Protein of unknown function (DUF1627)	NA|361aa|up_0|NZ_CP027440.1_644231_645314_-	NA	NA|99aa|down_0|NZ_CP027440.1_645567_645864_-	pfam05269, Phage_CII, Bacteriophage CII protein	NA|76aa|down_1|NZ_CP027440.1_646007_646235_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|257aa|down_2|NZ_CP027440.1_646319_647090_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|91aa|down_3|NZ_CP027440.1_647484_647757_+	NA	NA|238aa|down_4|NZ_CP027440.1_647760_648474_+	NA	NA|119aa|down_5|NZ_CP027440.1_648505_648862_+	NA	NA|72aa|down_6|NZ_CP027440.1_649193_649409_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|129aa|down_7|NZ_CP027440.1_649499_649886_+	NA	NA|683aa|down_8|NZ_CP027440.1_649994_652043_+	PRK09709, PRK09709, exodeoxyribonuclease VIII	NA|99aa|down_9|NZ_CP027440.1_652039_652336_+	pfam06064, Gam, Host-nuclease inhibitor protein Gam
GCF_003018255.1_ASM301825v1	NZ_CP027440	Escherichia coli strain 2012C-4502 chromosome, complete genome	2	1842366-1843188	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,DEDDh,DinG,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAAC	29,29,27	0	0	NA	NA	I-E:I-E:I-E	13,13,13	13	TypeI-E	cas3,DEDDh,DinG,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP027440.1_1834179_1834941_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP027440.1_1834921_1835971_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP027440.1_1835967_1836447_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP027440.1_1836446_1837157_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP027440.1_1837175_1837487_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP027440.1_1837679_1838003_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP027440.1_1838052_1838658_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP027440.1_1838657_1840085_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP027440.1_1840086_1840995_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP027440.1_1841246_1842284_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|95aa|down_0|NZ_CP027440.1_1843293_1843578_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_CP027440.1_1843579_1844497_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|200aa|down_2|NZ_CP027440.1_1844512_1845112_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|225aa|down_3|NZ_CP027440.1_1845098_1845773_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|364aa|down_4|NZ_CP027440.1_1845775_1846867_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|161aa|down_5|NZ_CP027440.1_1846879_1847362_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|503aa|down_6|NZ_CP027440.1_1847354_1848863_-	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cas3|889aa|down_7|NZ_CP027440.1_1849277_1851944_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|245aa|down_8|NZ_CP027440.1_1852302_1853037_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP027440.1_1853110_1854823_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_003018255.1_ASM301825v1	NZ_CP027440	Escherichia coli strain 2012C-4502 chromosome, complete genome	3	1868736-1869069	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	cas3,DEDDh,DinG,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	Unclear	cas3,DEDDh,DinG,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|424aa|up_9|NZ_CP027440.1_1857380_1858652_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP027440.1_1858642_1858903_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP027440.1_1858919_1859495_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP027440.1_1859641_1860502_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP027440.1_1860498_1861278_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|NZ_CP027440.1_1861255_1862593_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP027440.1_1862686_1864141_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP027440.1_1864210_1864996_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP027440.1_1865314_1866592_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP027440.1_1866618_1868097_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP027440.1_1869408_1870080_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|290aa|down_1|NZ_CP027440.1_1870374_1871244_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_2|NZ_CP027440.1_1871303_1872602_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_3|NZ_CP027440.1_1872689_1874327_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_4|NZ_CP027440.1_1874554_1875346_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|745aa|down_5|NZ_CP027440.1_1875441_1877676_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_6|NZ_CP027440.1_1877723_1879025_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_7|NZ_CP027440.1_1879081_1881838_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|447aa|down_8|NZ_CP027440.1_1882068_1883409_-	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|447aa|down_9|NZ_CP027440.1_1883429_1884770_-	TIGR03247, glucar-dehydr, glucarate dehydratase
GCF_003018255.1_ASM301825v1	NZ_CP027440	Escherichia coli strain 2012C-4502 chromosome, complete genome	4	2845241-2845391	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	CTTTGGGCAATTGAAGCCCTCTGT	24	0	0	NA	NA	NA	2	2	Unclear	cas3,DEDDh,DinG,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|156aa|up_9|NZ_CP027440.1_2839215_2839683_+,NA|155aa|up_8|NZ_CP027440.1_2839675_2840140_+,NA|62aa|up_7|NZ_CP027440.1_2840132_2840318_+,NA|68aa|up_6|NZ_CP027440.1_2840317_2840521_+,NA|139aa|up_3|NZ_CP027440.1_2843410_2843827_+,NA|129aa|down_0|NZ_CP027440.1_2845469_2845856_-	NA|156aa|up_9|NZ_CP027440.1_2839215_2839683_+	NA	NA|155aa|up_8|NZ_CP027440.1_2839675_2840140_+	NA	NA|62aa|up_7|NZ_CP027440.1_2840132_2840318_+	NA	NA|68aa|up_6|NZ_CP027440.1_2840317_2840521_+	NA	NA|100aa|up_5|NZ_CP027440.1_2840578_2840878_+	pfam13973, DUF4222, Domain of unknown function (DUF4222)	NA|713aa|up_4|NZ_CP027440.1_2840874_2843013_+	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|139aa|up_3|NZ_CP027440.1_2843410_2843827_+	NA	NA|150aa|up_2|NZ_CP027440.1_2843823_2844273_+	COG0629, Ssb, Single-stranded DNA-binding protein [DNA replication, recombination, and repair]	NA|116aa|up_1|NZ_CP027440.1_2844358_2844706_+	pfam04352, ProQ, ProQ/FINO family	NA|97aa|up_0|NZ_CP027440.1_2844728_2845019_+	pfam06069, PerC, PerC transcriptional activator	NA|129aa|down_0|NZ_CP027440.1_2845469_2845856_-	NA	NA|154aa|down_1|NZ_CP027440.1_2845950_2846412_+	pfam06069, PerC, PerC transcriptional activator	NA|131aa|down_2|NZ_CP027440.1_2847753_2848146_+	pfam06530, Phage_antitermQ, Phage antitermination protein Q	NA|275aa|down_3|NZ_CP027440.1_2849487_2850312_+	PRK11525, dinD, DNA-damage-inducible protein D; Provisional	NA|206aa|down_4|NZ_CP027440.1_2850603_2851221_+	COG2860, COG2860, Predicted membrane protein [Function unknown]	NA|562aa|down_5|NZ_CP027440.1_2851217_2852903_-	PRK08097, ligB, NAD-dependent DNA ligase LigB	NA|208aa|down_6|NZ_CP027440.1_2853160_2853784_+	PRK00300, gmk, guanylate kinase; Provisional	NA|92aa|down_7|NZ_CP027440.1_2853838_2854114_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|703aa|down_8|NZ_CP027440.1_2854132_2856241_+	PRK11092, PRK11092, bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	NA|230aa|down_9|NZ_CP027440.1_2856247_2856937_+	PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase; Provisional
GCF_003018255.1_ASM301825v1	NZ_CP027440	Escherichia coli strain 2012C-4502 chromosome, complete genome	5	3138991-3139117	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GTAGGCCGGATAAGGCACTCGTGCCGCATCCGGCA	35	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|97aa|up_9|NZ_CP027440.1_3127342_3127633_+	COG2944, COG2944, Predicted transcriptional regulator [Transcription]	NA|73aa|up_8|NZ_CP027440.1_3128237_3128456_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|310aa|up_7|NZ_CP027440.1_3128670_3129600_-	PRK03564, PRK03564, formate dehydrogenase accessory protein FdhE; Provisional	NA|212aa|up_6|NZ_CP027440.1_3129596_3130232_-	PRK10639, PRK10639, formate dehydrogenase cytochrome b556 subunit	NA|301aa|up_5|NZ_CP027440.1_3130228_3131131_-	TIGR01582, Formate_dehydrogenase_iron-sulfur_subunit, formate dehydrogenase, beta subunit, Fe-S containing	NA|1017aa|up_4|NZ_CP027440.1_3131143_3134194_-	TIGR01553, Formate_dehydrogenase_major_subunit, formate dehydrogenase-N alpha subunit	NA|278aa|up_3|NZ_CP027440.1_3134387_3135221_+	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD	NA|465aa|up_2|NZ_CP027440.1_3136353_3137748_+	pfam16966, Porin_8, Porin-like glycoporin RafY	NA|105aa|up_1|NZ_CP027440.1_3137788_3138103_-	TIGR02625, L-rhamnose_mutarotase, L-rhamnose mutarotase	NA|275aa|up_0|NZ_CP027440.1_3138112_3138937_-	PRK03634, PRK03634, rhamnulose-1-phosphate aldolase; Provisional	NA|420aa|down_0|NZ_CP027440.1_3139121_3140381_-	PRK01076, PRK01076, L-rhamnose isomerase; Provisional	NA|490aa|down_1|NZ_CP027440.1_3140377_3141847_-	PRK10640, rhaB, rhamnulokinase; Provisional	NA|279aa|down_2|NZ_CP027440.1_3142134_3142971_+	PRK13503, PRK13503, HTH-type transcriptional activator RhaS	NA|313aa|down_3|NZ_CP027440.1_3142954_3143893_+	PRK13500, PRK13500, HTH-type transcriptional activator RhaR	NA|345aa|down_4|NZ_CP027440.1_3143889_3144924_-	pfam06379, RhaT, L-rhamnose-proton symport protein (RhaT)	NA|207aa|down_5|NZ_CP027440.1_3145208_3145829_+	PRK10925, PRK10925, superoxide dismutase [Mn]	NA|328aa|down_6|NZ_CP027440.1_3146088_3147072_+	TIGR00793, 2-keto-3-deoxygluconate_permease, 2-keto-3-deoxygluconate transporter	NA|225aa|down_7|NZ_CP027440.1_3147220_3147895_+	PRK11536, PRK11536, 6-N-hydroxylaminopurine resistance protein; Provisional	NA|458aa|down_8|NZ_CP027440.1_3148066_3149440_-	PRK09470, cpxA, envelope stress sensor histidine kinase CpxA	NA|233aa|down_9|NZ_CP027440.1_3149436_3150135_-	PRK10955, PRK10955, envelope stress response regulator transcription factor CpxR
GCF_003018255.1_ASM301825v1	NZ_CP027440	Escherichia coli strain 2012C-4502 chromosome, complete genome	6	4029162-4029306	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TGCCTTAACGGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC	44	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|133aa|up_9|NZ_CP027440.1_4019196_4019595_+,NA	NA|133aa|up_9|NZ_CP027440.1_4019196_4019595_+	NA	NA|379aa|up_8|NZ_CP027440.1_4019875_4021012_+	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated	NA|257aa|up_7|NZ_CP027440.1_4021081_4021852_-	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional	NA|158aa|up_6|NZ_CP027440.1_4022005_4022479_+	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|815aa|up_5|NZ_CP027440.1_4022521_4024966_-	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|193aa|up_4|NZ_CP027440.1_4025205_4025784_+	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|256aa|up_3|NZ_CP027440.1_4025899_4026667_+	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|247aa|up_2|NZ_CP027440.1_4026637_4027378_-	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|250aa|up_1|NZ_CP027440.1_4027689_4028439_+	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|166aa|up_0|NZ_CP027440.1_4028614_4029112_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|580aa|down_0|NZ_CP027440.1_4029329_4031069_-	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|257aa|down_1|NZ_CP027440.1_4031028_4031799_+	PRK06778, PRK06778, hypothetical protein; Validated	NA|352aa|down_2|NZ_CP027440.1_4031869_4032925_+	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|151aa|down_3|NZ_CP027440.1_4032921_4033374_+	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|85aa|down_4|NZ_CP027440.1_4033691_4033946_+	PRK09588, PRK09588, hypothetical protein; Reviewed	NA|486aa|down_5|NZ_CP027440.1_4034302_4035760_-	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|153aa|down_6|NZ_CP027440.1_4036020_4036479_+	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|415aa|down_7|NZ_CP027440.1_4036570_4037815_+	PRK05077, frsA, esterase FrsA	NA|134aa|down_8|NZ_CP027440.1_4037872_4038274_+	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|352aa|down_9|NZ_CP027440.1_4038312_4039368_-	PRK10159, PRK10159, phosphoporin PhoE
