assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003018575.1_ASM301857v1	NZ_CP027582	Escherichia coli strain 2013C-4538 chromosome, complete genome	1	1189593-1189716	1	CRISPRCasFinder	no	DEDDh	DEDDh,c2c9_V-U4,DinG,cas3,PrimPol,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,PrimPol,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|30aa|down_7|NZ_CP027582.1_1198612_1198702_+	NA|471aa|up_9|NZ_CP027582.1_1179046_1180459_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP027582.1_1181015_1181225_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP027582.1_1181680_1182307_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP027582.1_1182327_1184430_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP027582.1_1184433_1185081_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP027582.1_1185144_1185813_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP027582.1_1185809_1186595_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP027582.1_1186598_1187411_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP027582.1_1187422_1189027_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP027582.1_1189152_1189458_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP027582.1_1190030_1191287_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP027582.1_1191327_1192701_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP027582.1_1192915_1193557_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP027582.1_1193596_1194745_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP027582.1_1195035_1196247_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP027582.1_1196359_1197292_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP027582.1_1197288_1198314_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP027582.1_1198612_1198702_+	NA	NA|390aa|down_8|NZ_CP027582.1_1198867_1200037_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP027582.1_1200182_1200764_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_003018575.1_ASM301857v1	NZ_CP027582	Escherichia coli strain 2013C-4538 chromosome, complete genome	2	1856218-1856421	1	PILER-CR	no		DEDDh,c2c9_V-U4,DinG,cas3,PrimPol,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TCTCCCCACTTTTACTCCCCACTTTTT	27	1	1	1856355-1856412	NZ_CP027582.1_508810-508867	NA	2	2	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,PrimPol,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|75aa|up_4|NZ_CP027582.1_1854608_1854833_-,NA|63aa|up_1|NZ_CP027582.1_1855663_1855852_-,NA|84aa|up_0|NZ_CP027582.1_1855965_1856217_-,NA|78aa|down_1|NZ_CP027582.1_1858118_1858352_-,NA|74aa|down_2|NZ_CP027582.1_1858353_1858575_-,NA|122aa|down_3|NZ_CP027582.1_1858567_1858933_-,NA|75aa|down_4|NZ_CP027582.1_1858925_1859150_-,NA|77aa|down_5|NZ_CP027582.1_1859139_1859370_-	NA|99aa|up_9|NZ_CP027582.1_1850706_1851003_-	TIGR01560, phage-related_hypothetical_protein, uncharacterized phage protein (possible DNA packaging)	NA|113aa|up_8|NZ_CP027582.1_1850999_1851338_-	COG5614, COG5614, Bacteriophage head-tail adaptor [General function prediction only]	NA|392aa|up_7|NZ_CP027582.1_1851334_1852510_-	COG4695, COG4695, Phage-related protein [Function unknown]	NA|191aa|up_6|NZ_CP027582.1_1852547_1853120_-	COG3740, COG3740, Phage head maturation protease [General function prediction only]	NA|386aa|up_5|NZ_CP027582.1_1853159_1854317_-	COG4653, COG4653, Predicted phage phi-C31 gp36 major capsid-like protein [General function prediction only]	NA|75aa|up_4|NZ_CP027582.1_1854608_1854833_-	NA	NA|91aa|up_3|NZ_CP027582.1_1854958_1855231_-	pfam06069, PerC, PerC transcriptional activator	NA|137aa|up_2|NZ_CP027582.1_1855243_1855654_-	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|63aa|up_1|NZ_CP027582.1_1855663_1855852_-	NA	NA|84aa|up_0|NZ_CP027582.1_1855965_1856217_-	NA	NA|100aa|down_0|NZ_CP027582.1_1857813_1858113_-	pfam13973, DUF4222, Domain of unknown function (DUF4222)	NA|78aa|down_1|NZ_CP027582.1_1858118_1858352_-	NA	NA|74aa|down_2|NZ_CP027582.1_1858353_1858575_-	NA	NA|122aa|down_3|NZ_CP027582.1_1858567_1858933_-	NA	NA|75aa|down_4|NZ_CP027582.1_1858925_1859150_-	NA	NA|77aa|down_5|NZ_CP027582.1_1859139_1859370_-	NA	NA|426aa|down_6|NZ_CP027582.1_1859366_1860644_-	smart01040, Bro-N, BRO family, N-terminal domain	NA|63aa|down_7|NZ_CP027582.1_1860696_1860885_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|410aa|down_8|NZ_CP027582.1_1861249_1862479_-	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain	NA|374aa|down_9|NZ_CP027582.1_1862727_1863849_+	COG2850, COG2850, Uncharacterized conserved protein [Function unknown]
GCF_003018575.1_ASM301857v1	NZ_CP027582	Escherichia coli strain 2013C-4538 chromosome, complete genome	3	2138289-2138380	2	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,DinG,cas3,PrimPol,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,PrimPol,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|70aa|up_9|NZ_CP027582.1_2127539_2127749_-,NA	NA|70aa|up_9|NZ_CP027582.1_2127539_2127749_-	NA	NA|1321aa|up_8|NZ_CP027582.1_2127803_2131766_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP027582.1_2131805_2132444_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP027582.1_2132731_2133823_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP027582.1_2133822_2134515_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP027582.1_2134526_2134913_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP027582.1_2134920_2135721_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP027582.1_2135730_2136321_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP027582.1_2136331_2136826_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP027582.1_2136846_2138175_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP027582.1_2138803_2139400_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP027582.1_2139420_2139648_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP027582.1_2139685_2140927_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|420aa|down_3|NZ_CP027582.1_2141218_2142478_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP027582.1_2142737_2143658_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP027582.1_2143657_2143963_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP027582.1_2144055_2144655_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP027582.1_2144651_2147198_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP027582.1_2147197_2148370_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP027582.1_2148499_2149192_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_003018575.1_ASM301857v1	NZ_CP027582	Escherichia coli strain 2013C-4538 chromosome, complete genome	4	2625414-2625558	3	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,DinG,cas3,PrimPol,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,PrimPol,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|186aa|up_9|NZ_CP027582.1_2619637_2620195_+,NA|206aa|up_7|NZ_CP027582.1_2620750_2621368_+,NA|56aa|up_4|NZ_CP027582.1_2622016_2622184_+,NA|115aa|up_3|NZ_CP027582.1_2622212_2622557_+,NA	NA|186aa|up_9|NZ_CP027582.1_2619637_2620195_+	NA	NA|186aa|up_8|NZ_CP027582.1_2620191_2620749_+	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|206aa|up_7|NZ_CP027582.1_2620750_2621368_+	NA	NA|101aa|up_6|NZ_CP027582.1_2621364_2621667_+	TIGR03655, hypothetical_protein_VT2-Sap32, restriction alleviation protein, Lar family	NA|95aa|up_5|NZ_CP027582.1_2621659_2621944_+	smart01022, ASCH, The ASCH domain adopts a beta-barrel fold similar to that of the PUA domain	NA|56aa|up_4|NZ_CP027582.1_2622016_2622184_+	NA	NA|115aa|up_3|NZ_CP027582.1_2622212_2622557_+	NA	NA|73aa|up_2|NZ_CP027582.1_2622663_2622882_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_CP027582.1_2622859_2623930_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_CP027582.1_2624064_2625348_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP027582.1_2625581_2627843_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP027582.1_2628025_2629459_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP027582.1_2629534_2630587_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP027582.1_2630770_2631724_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP027582.1_2631764_2632760_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP027582.1_2632914_2633733_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP027582.1_2633733_2634792_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP027582.1_2634794_2635484_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP027582.1_2635483_2636257_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP027582.1_2636422_2636572_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_003018575.1_ASM301857v1	NZ_CP027582	Escherichia coli strain 2013C-4538 chromosome, complete genome	5	3467360-3467492	2	PILER-CR	no		DEDDh,c2c9_V-U4,DinG,cas3,PrimPol,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,PrimPol,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|156aa|up_9|NZ_CP027582.1_3458601_3459069_+,NA	NA|156aa|up_9|NZ_CP027582.1_3458601_3459069_+	NA	NA|60aa|up_8|NZ_CP027582.1_3459167_3459347_-	pfam07362, CcdA, Post-segregation antitoxin CcdA	NA|160aa|up_7|NZ_CP027582.1_3459367_3459847_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP027582.1_3460038_3461901_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP027582.1_3461893_3462424_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP027582.1_3462531_3463863_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP027582.1_3463921_3464209_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP027582.1_3464205_3465492_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP027582.1_3465542_3466484_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP027582.1_3466498_3467269_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP027582.1_3467742_3469257_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP027582.1_3469287_3470430_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|327aa|down_2|NZ_CP027582.1_3470666_3471647_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|406aa|down_3|NZ_CP027582.1_3471837_3473055_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_4|NZ_CP027582.1_3473128_3474682_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_5|NZ_CP027582.1_3474790_3475576_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_6|NZ_CP027582.1_3475581_3476172_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_7|NZ_CP027582.1_3476257_3476653_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_8|NZ_CP027582.1_3476913_3480135_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_9|NZ_CP027582.1_3480152_3481301_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit
GCF_003018575.1_ASM301857v1	NZ_CP027582	Escherichia coli strain 2013C-4538 chromosome, complete genome	6	5052602-5052719	4	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,DinG,cas3,PrimPol,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,PrimPol,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|55aa|down_0|NZ_CP027582.1_5052792_5052957_-	NA|115aa|up_9|NZ_CP027582.1_5040323_5040668_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP027582.1_5040856_5041795_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP027582.1_5041893_5042883_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP027582.1_5042904_5044236_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP027582.1_5044261_5045470_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP027582.1_5045503_5047798_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP027582.1_5047811_5048201_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP027582.1_5048272_5049637_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP027582.1_5049911_5051243_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP027582.1_5051270_5052581_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP027582.1_5052792_5052957_-	NA	NA|234aa|down_1|NZ_CP027582.1_5052979_5053681_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP027582.1_5053785_5054682_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP027582.1_5054732_5055089_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP027582.1_5055330_5055696_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP027582.1_5055988_5056975_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_CP027582.1_5057044_5057527_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP027582.1_5057622_5057922_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP027582.1_5057911_5058316_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP027582.1_5058318_5058624_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_003018575.1_ASM301857v1	NZ_CP027582	Escherichia coli strain 2013C-4538 chromosome, complete genome	7	5449636-5450213	5,1,3	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,c2c9_V-U4,DinG,cas3,PrimPol,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GNGTTCCCCGCGCCAGCGGGGATAAACCG,TCCCCGCGCCAGCGGGGATAAACC	29,29,24	0	0	NA	NA	I-E:I-E:I-E	9,9,9	9	Unclear	DEDDh,c2c9_V-U4,DinG,cas3,PrimPol,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|47aa|up_1|NZ_CP027582.1_5448345_5448486_-,NA	NA|434aa|up_9|NZ_CP027582.1_5439042_5440344_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP027582.1_5440391_5442626_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP027582.1_5442703_5442952_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP027582.1_5442951_5443287_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP027582.1_5443357_5444149_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP027582.1_5444376_5446014_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP027582.1_5446101_5447400_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP027582.1_5447459_5448332_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP027582.1_5448345_5448486_-	NA	NA|224aa|up_0|NZ_CP027582.1_5448624_5449296_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP027582.1_5450851_5452330_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP027582.1_5452356_5453634_-	cd06174, MFS, Major Facilitator Superfamily	NA|32aa|down_2|NZ_CP027582.1_5453951_5454047_+	PRK06935, PRK06935, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	NA|227aa|down_3|NZ_CP027582.1_5454056_5454737_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_4|NZ_CP027582.1_5454806_5456261_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_5|NZ_CP027582.1_5456354_5457692_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_6|NZ_CP027582.1_5457669_5458449_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_7|NZ_CP027582.1_5458445_5459306_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_8|NZ_CP027582.1_5459453_5460029_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_9|NZ_CP027582.1_5460045_5460306_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]
GCF_003018575.1_ASM301857v1	NZ_CP027582	Escherichia coli strain 2013C-4538 chromosome, complete genome	8	5475914-5476126	4,6,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	DEDDh,c2c9_V-U4,DinG,cas3,PrimPol,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	TGTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	30,29,29	0	0	NA	NA	I-E:I-E:I-E	2,2,3	3	TypeI-E	DEDDh,c2c9_V-U4,DinG,cas3,PrimPol,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|245aa|up_9|NZ_CP027582.1_5465911_5466646_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP027582.1_5466910_5467063_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP027582.1_5467256_5469956_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP027582.1_5470053_5471616_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|180aa|up_5|NZ_CP027582.1_5471612_5472152_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP027582.1_5472163_5473219_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP027582.1_5473229_5473976_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP027582.1_5473957_5474608_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP027582.1_5474604_5475525_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP027582.1_5475524_5475818_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP027582.1_5476146_5477184_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP027582.1_5477435_5478344_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP027582.1_5478345_5479773_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP027582.1_5479772_5480378_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP027582.1_5480427_5480751_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP027582.1_5480944_5481256_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP027582.1_5481274_5481985_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP027582.1_5481984_5482464_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP027582.1_5482460_5483510_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP027582.1_5483490_5484252_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
