assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003018795.1_ASM301879v1	NZ_CP027352	Escherichia coli strain 2012C-4606 chromosome, complete genome	1	932124-932215	1	CRISPRCasFinder	no		c2c9_V-U4,cas3,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|70aa|up_9|NZ_CP027352.1_921374_921584_-,NA|26aa|down_0|NZ_CP027352.1_933633_933711_-,NA|58aa|down_7|NZ_CP027352.1_942221_942395_-	NA|70aa|up_9|NZ_CP027352.1_921374_921584_-	NA	NA|1321aa|up_8|NZ_CP027352.1_921638_925601_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP027352.1_925640_926279_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP027352.1_926566_927658_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP027352.1_927657_928350_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP027352.1_928361_928748_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP027352.1_928755_929556_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP027352.1_929565_930156_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP027352.1_930166_930661_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP027352.1_930681_932010_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|26aa|down_0|NZ_CP027352.1_933633_933711_-	NA	NA|90aa|down_1|NZ_CP027352.1_933821_934091_-	pfam06820, Phage_fiber_C, Putative prophage tail fibre C-terminus	NA|200aa|down_2|NZ_CP027352.1_935469_936069_-	pfam06316, Ail_Lom, Enterobacterial Ail/Lom protein	NA|1159aa|down_3|NZ_CP027352.1_936135_939612_-	COG4733, COG4733, Phage-related protein, tail component [Function unknown]	NA|211aa|down_4|NZ_CP027352.1_939857_940490_-	COG4723, COG4723, Phage-related protein, tail component [Function unknown]	NA|246aa|down_5|NZ_CP027352.1_940435_941173_-	cd08073, MPN_NLPC_P60, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains	NA|308aa|down_6|NZ_CP027352.1_941227_942151_-	pfam10547, P22_AR_N, P22_AR N-terminal domain	NA|58aa|down_7|NZ_CP027352.1_942221_942395_-	NA	NA|107aa|down_8|NZ_CP027352.1_942502_942823_+	pfam03869, Arc, Arc-like DNA binding domain	NA|233aa|down_9|NZ_CP027352.1_942839_943538_-	COG4672, gp18, Phage-related protein [Function unknown]
GCF_003018795.1_ASM301879v1	NZ_CP027352	Escherichia coli strain 2012C-4606 chromosome, complete genome	2	2535592-2536169	1,1,2	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	c2c9_V-U4,cas3,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	9,8,8	9	TypeI-E	c2c9_V-U4,cas3,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|254aa|up_9|NZ_CP027352.1_2527465_2528227_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP027352.1_2528207_2529257_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP027352.1_2529253_2529733_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP027352.1_2529732_2530443_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP027352.1_2530461_2530773_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP027352.1_2530966_2531290_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP027352.1_2531339_2531945_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP027352.1_2531944_2533372_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP027352.1_2533373_2534282_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP027352.1_2534533_2535571_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP027352.1_2536265_2536559_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP027352.1_2536558_2537479_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP027352.1_2537475_2538126_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP027352.1_2538107_2538854_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP027352.1_2538864_2539920_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|180aa|down_5|NZ_CP027352.1_2539931_2540471_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP027352.1_2540467_2542030_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	NA|51aa|down_7|NZ_CP027352.1_2545020_2545173_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_8|NZ_CP027352.1_2545437_2546172_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP027352.1_2546245_2547958_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_003018795.1_ASM301879v1	NZ_CP027352	Escherichia coli strain 2012C-4606 chromosome, complete genome	3	2561870-2562447	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no		c2c9_V-U4,cas3,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGA,CGGTTTATCCCCGCTGGCGCGGGGA	29,25,25	0	0	NA	NA	I-E:I-E:I-E	9,9,9	9	Orphan	c2c9_V-U4,cas3,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|47aa|down_1|NZ_CP027352.1_2563596_2563737_+	NA|424aa|up_9|NZ_CP027352.1_2550515_2551787_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP027352.1_2551777_2552038_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP027352.1_2552054_2552630_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP027352.1_2552777_2553638_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP027352.1_2553634_2554414_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|485aa|up_4|NZ_CP027352.1_2555821_2557276_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|227aa|up_3|NZ_CP027352.1_2557345_2558026_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|32aa|up_2|NZ_CP027352.1_2558035_2558131_-	PRK06935, PRK06935, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	NA|426aa|up_1|NZ_CP027352.1_2558448_2559726_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP027352.1_2559752_2561231_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP027352.1_2562786_2563458_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP027352.1_2563596_2563737_+	NA	NA|291aa|down_2|NZ_CP027352.1_2563750_2564623_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP027352.1_2564682_2565981_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP027352.1_2566068_2567706_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP027352.1_2567933_2568725_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP027352.1_2568795_2569131_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP027352.1_2569130_2569379_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP027352.1_2569456_2571691_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP027352.1_2571738_2573040_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
