assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003018855.1_ASM301885v1	NZ_CP027373	Escherichia coli strain 05-3629 chromosome, complete genome	1	223446-223537	1	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,c2c9_V-U4	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,c2c9_V-U4	NA|70aa|up_9|NZ_CP027373.1_212521_212731_-,NA	NA|70aa|up_9|NZ_CP027373.1_212521_212731_-	NA	NA|1321aa|up_8|NZ_CP027373.1_212785_216748_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP027373.1_216787_217426_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP027373.1_217713_218805_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP027373.1_218804_219497_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP027373.1_219508_219895_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP027373.1_219902_220703_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP027373.1_220712_221303_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP027373.1_221313_221808_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP027373.1_221828_223157_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP027373.1_223960_224557_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP027373.1_224577_224805_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP027373.1_224842_226084_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP027373.1_226376_227633_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP027373.1_227892_228813_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP027373.1_228812_229118_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP027373.1_229210_229810_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP027373.1_229806_232353_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP027373.1_232352_233525_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP027373.1_233654_234347_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_003018855.1_ASM301885v1	NZ_CP027373	Escherichia coli strain 05-3629 chromosome, complete genome	2	365495-365643	2,1	CRISPRCasFinder,PILER-CR	no		cas3,DinG,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,c2c9_V-U4	Orphan	ATTTCTAAGCTGCCTGTACGGCAGTGAAC,ATTTCTAAGCTGTCTGTACGGCAGTGAAC	29,29	0	0	NA	NA	I-F:I-F	2,2	2	Orphan	cas3,DinG,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,c2c9_V-U4	NA,NA	NA|431aa|up_9|NZ_CP027373.1_350287_351580_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP027373.1_351670_353014_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP027373.1_353024_353636_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1382aa|up_6|NZ_CP027373.1_353790_357936_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP027373.1_358070_358565_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP027373.1_359109_360075_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP027373.1_360197_361964_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP027373.1_361964_363686_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP027373.1_363727_364432_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP027373.1_364716_364935_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP027373.1_365856_368133_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP027373.1_368163_368484_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP027373.1_368806_369031_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP027373.1_369103_371050_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP027373.1_371046_372162_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP027373.1_372312_373269_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP027373.1_373265_374924_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP027373.1_375349_376045_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP027373.1_376540_377440_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP027373.1_377583_379236_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_003018855.1_ASM301885v1	NZ_CP027373	Escherichia coli strain 05-3629 chromosome, complete genome	3	757675-757771	3	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,c2c9_V-U4	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,c2c9_V-U4	NA,NA	NA|231aa|up_9|NZ_CP027373.1_749460_750153_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP027373.1_750372_750915_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP027373.1_751395_752262_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP027373.1_752263_752476_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP027373.1_752583_753105_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP027373.1_753140_754526_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP027373.1_754699_755194_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP027373.1_755196_755919_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP027373.1_756036_756546_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP027373.1_756542_757610_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP027373.1_757804_758698_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP027373.1_758694_759510_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP027373.1_759520_760780_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP027373.1_760789_762457_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP027373.1_762773_763823_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP027373.1_763844_765080_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP027373.1_765090_765876_+	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|382aa|down_7|NZ_CP027373.1_766004_767150_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP027373.1_767171_768473_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP027373.1_768529_769891_-	PRK08044, PRK08044, allantoinase AllB
GCF_003018855.1_ASM301885v1	NZ_CP027373	Escherichia coli strain 05-3629 chromosome, complete genome	4	922195-922339	4	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,c2c9_V-U4	Orphan	TAAACCGTAGGCCTGATAAGACGCGCAAAGCGTCGCATCAGGCAT	45	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,c2c9_V-U4	NA,NA	NA|276aa|up_9|NZ_CP027373.1_913212_914040_-	PRK10160, PRK10160, taurine ABC transporter permease TauC	NA|256aa|up_8|NZ_CP027373.1_914036_914804_-	PRK11248, tauB, taurine ABC transporter ATP-binding subunit	NA|321aa|up_7|NZ_CP027373.1_914816_915779_-	PRK11480, tauA, taurine transporter substrate binding subunit; Provisional	NA|224aa|up_6|NZ_CP027373.1_916394_917066_+	COG2120, COG2120, Uncharacterized proteins, LmbE homologs [Function unknown]	NA|399aa|up_5|NZ_CP027373.1_917075_918272_+	COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|194aa|up_4|NZ_CP027373.1_918249_918831_+	cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains	NA|258aa|up_3|NZ_CP027373.1_918832_919606_+	TIGR04390, hypothetical_protein, outer membrane protein, YaiO family	NA|92aa|up_2|NZ_CP027373.1_919789_920065_+	PRK11352, PRK11352, formaldehyde-responsive transcriptional repressor FrmR	NA|370aa|up_1|NZ_CP027373.1_920099_921209_+	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases	NA|278aa|up_0|NZ_CP027373.1_921301_922135_+	TIGR02821, S-formylglutathione_hydrolase, S-formylglutathione hydrolase	NA|180aa|down_0|NZ_CP027373.1_922360_922900_-	COG3122, COG3122, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|down_1|NZ_CP027373.1_923001_924213_-	PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional	NA|338aa|down_2|NZ_CP027373.1_924487_925501_-	PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated	NA|317aa|down_3|NZ_CP027373.1_925497_926448_-	PRK08300, PRK08300, acetaldehyde dehydrogenase; Validated	NA|270aa|down_4|NZ_CP027373.1_926444_927254_-	PRK11342, mhpD, 2-keto-4-pentenoate hydratase; Provisional	NA|289aa|down_5|NZ_CP027373.1_927263_928130_-	TIGR03343, 2-hydroxy-6-oxo-6-phenylhexa-24-dienoate_hydrolase, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase	NA|315aa|down_6|NZ_CP027373.1_928147_929092_-	cd07365, MhpB_like, Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate	NA|555aa|down_7|NZ_CP027373.1_929093_930758_-	PRK06183, mhpA, bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase	NA|316aa|down_8|NZ_CP027373.1_930834_931782_+	PRK09834, PRK09834, DNA-binding transcriptional regulator	NA|361aa|down_9|NZ_CP027373.1_931858_932941_+	PRK09526, lacI, lac repressor; Reviewed
GCF_003018855.1_ASM301885v1	NZ_CP027373	Escherichia coli strain 05-3629 chromosome, complete genome	5	1051301-1051394	5	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,c2c9_V-U4	Orphan	GGGGACTGATTTGTGCGCGTTGTTACATCG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,c2c9_V-U4	NA|326aa|up_5|NZ_CP027373.1_1045621_1046599_-,NA|310aa|down_9|NZ_CP027373.1_1057660_1058590_+	NA|131aa|up_9|NZ_CP027373.1_1041386_1041779_-	pfam02561, FliS, Flagellar protein FliS	NA|439aa|up_8|NZ_CP027373.1_1041801_1043118_-	PRK08032, fliD, flagellar capping protein; Reviewed	NA|305aa|up_7|NZ_CP027373.1_1043324_1044239_-	NF033376, flg_lateral_LafA, lateral flagellin LafA	NA|281aa|up_6|NZ_CP027373.1_1044724_1045567_+	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|326aa|up_5|NZ_CP027373.1_1045621_1046599_-	NA	NA|310aa|up_4|NZ_CP027373.1_1046615_1047545_-	PRK07192, flgL, flagellar hook-associated protein FlgL; Reviewed	NA|459aa|up_3|NZ_CP027373.1_1047559_1048936_-	PRK07191, flgK, flagellar hook-associated protein FlgK; Validated	NA|100aa|up_2|NZ_CP027373.1_1049118_1049418_-	PRK12708, flgJ, peptidoglycan hydrolase; Reviewed	NA|367aa|up_1|NZ_CP027373.1_1049417_1050518_-	PRK05303, flgI, flagellar basal body P-ring protein FlgI	NA|222aa|up_0|NZ_CP027373.1_1050532_1051198_-	PRK12407, flgH, flagellar basal body L-ring protein FlgH	NA|262aa|down_0|NZ_CP027373.1_1051469_1052255_-	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional	NA|246aa|down_1|NZ_CP027373.1_1052333_1053071_-	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|401aa|down_2|NZ_CP027373.1_1053070_1054273_-	PRK06803, flgE, flagellar basal body protein FlaE	NA|238aa|down_3|NZ_CP027373.1_1054432_1055146_-	PRK09619, flgD, flagellar hook assembly protein FlgD	NA|144aa|down_4|NZ_CP027373.1_1055145_1055577_-	PRK06802, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|112aa|down_5|NZ_CP027373.1_1055579_1055915_-	PRK12685, flgB, flagellar basal body rod protein FlgB; Reviewed	NA|246aa|down_6|NZ_CP027373.1_1055996_1056734_+	PRK06804, flgA, flagellar basal body P-ring formation protein FlgA	NA|93aa|down_7|NZ_CP027373.1_1056814_1057093_+	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM	NA|143aa|down_8|NZ_CP027373.1_1057105_1057534_+	pfam05130, FlgN, FlgN protein	NA|310aa|down_9|NZ_CP027373.1_1057660_1058590_+	NA
GCF_003018855.1_ASM301885v1	NZ_CP027373	Escherichia coli strain 05-3629 chromosome, complete genome	6	2711005-2711122	6	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,c2c9_V-U4	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,c2c9_V-U4	NA,NA|55aa|down_0|NZ_CP027373.1_2711195_2711360_-	NA|115aa|up_9|NZ_CP027373.1_2698726_2699071_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP027373.1_2699259_2700198_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP027373.1_2700296_2701286_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP027373.1_2701307_2702639_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP027373.1_2702664_2703873_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP027373.1_2703906_2706201_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP027373.1_2706214_2706604_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP027373.1_2706675_2708040_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP027373.1_2708314_2709646_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP027373.1_2709673_2710984_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP027373.1_2711195_2711360_-	NA	NA|234aa|down_1|NZ_CP027373.1_2711382_2712084_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP027373.1_2712188_2713085_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP027373.1_2713135_2713492_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP027373.1_2713733_2714099_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP027373.1_2714391_2715378_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_CP027373.1_2715447_2715930_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP027373.1_2716025_2716325_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP027373.1_2716314_2716719_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP027373.1_2716721_2717027_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_003018855.1_ASM301885v1	NZ_CP027373	Escherichia coli strain 05-3629 chromosome, complete genome	7	3104892-3105530	7,1,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	cas3,DinG,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,c2c9_V-U4	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,8	10	Unclear	cas3,DinG,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,c2c9_V-U4	NA|47aa|up_1|NZ_CP027373.1_3103600_3103741_-,NA	NA|434aa|up_9|NZ_CP027373.1_3094297_3095599_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP027373.1_3095646_3097881_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP027373.1_3097958_3098207_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP027373.1_3098206_3098542_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP027373.1_3098612_3099404_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP027373.1_3099631_3101269_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP027373.1_3101356_3102655_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP027373.1_3102714_3103587_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP027373.1_3103600_3103741_-	NA	NA|224aa|up_0|NZ_CP027373.1_3103879_3104551_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP027373.1_3106168_3107647_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP027373.1_3107673_3108951_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP027373.1_3109269_3110055_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP027373.1_3110124_3111579_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP027373.1_3111672_3113010_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP027373.1_3112987_3113767_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP027373.1_3113763_3114624_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP027373.1_3114771_3115347_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP027373.1_3115363_3115624_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP027373.1_3115614_3116886_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_003018855.1_ASM301885v1	NZ_CP027373	Escherichia coli strain 05-3629 chromosome, complete genome	8	3131234-3131689	3,8,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,DinG,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,c2c9_V-U4	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	7,7,7	7	TypeI-E	cas3,DinG,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,c2c9_V-U4	NA,NA	NA|245aa|up_9|NZ_CP027373.1_3121229_3121964_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP027373.1_3122228_3122381_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP027373.1_3122575_3125275_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP027373.1_3125372_3126935_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|180aa|up_5|NZ_CP027373.1_3126931_3127471_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP027373.1_3127482_3128538_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP027373.1_3128548_3129295_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP027373.1_3129276_3129927_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP027373.1_3129923_3130844_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP027373.1_3130843_3131137_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP027373.1_3131770_3132808_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP027373.1_3133059_3133968_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP027373.1_3133969_3135397_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP027373.1_3135396_3136002_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP027373.1_3136051_3136375_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP027373.1_3136568_3136880_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP027373.1_3136898_3137609_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP027373.1_3137608_3138088_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP027373.1_3138084_3139134_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP027373.1_3139114_3139876_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_003018855.1_ASM301885v1	NZ_CP027373	Escherichia coli strain 05-3629 chromosome, complete genome	9	4341800-4341923	9	CRISPRCasFinder	no	DEDDh	cas3,DinG,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,c2c9_V-U4	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,c2c9_V-U4	NA,NA|30aa|down_7|NZ_CP027373.1_4350819_4350909_+	NA|471aa|up_9|NZ_CP027373.1_4331253_4332666_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP027373.1_4333222_4333432_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP027373.1_4333887_4334514_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP027373.1_4334534_4336637_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP027373.1_4336640_4337288_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP027373.1_4337351_4338020_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP027373.1_4338016_4338802_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP027373.1_4338805_4339618_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP027373.1_4339629_4341234_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP027373.1_4341359_4341665_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP027373.1_4342237_4343494_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP027373.1_4343534_4344908_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP027373.1_4345122_4345764_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP027373.1_4345803_4346952_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP027373.1_4347242_4348454_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP027373.1_4348566_4349499_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP027373.1_4349495_4350521_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP027373.1_4350819_4350909_+	NA	NA|390aa|down_8|NZ_CP027373.1_4351074_4352244_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP027373.1_4352389_4352971_-	PRK10543, PRK10543, superoxide dismutase [Fe]
