assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003019075.1_ASM301907v1	NZ_CP027459	Escherichia coli strain 90-3040 chromosome, complete genome	1	789187-789323	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,c2c9_V-U4,WYL,RT,cse2gr11,cas7,cas5,cas6e,cas2	Orphan	CTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCA	40	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,c2c9_V-U4,WYL,RT,cse2gr11,cas7,cas5,cas6e,cas2	NA,NA|389aa|down_5|NZ_CP027459.1_795977_797144_+,NA|78aa|down_8|NZ_CP027459.1_799007_799241_+	NA|249aa|up_9|NZ_CP027459.1_778048_778795_+	PRK10063, PRK10063, colanic acid biosynthesis glycosyltransferase WcaE	NA|183aa|up_8|NZ_CP027459.1_778810_779359_+	TIGR04008, WcaF, colanic acid biosynthesis acetyltransferase WcaF	NA|374aa|up_7|NZ_CP027459.1_779384_780506_+	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|322aa|up_6|NZ_CP027459.1_780508_781474_+	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|160aa|up_5|NZ_CP027459.1_781476_781956_+	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase	NA|408aa|up_4|NZ_CP027459.1_781952_783176_+	TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase WcaI	NA|479aa|up_3|NZ_CP027459.1_783178_784615_+	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional	NA|457aa|up_2|NZ_CP027459.1_784807_786178_+	PRK15414, PRK15414, phosphomannomutase	NA|465aa|up_1|NZ_CP027459.1_786232_787627_+	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional	NA|493aa|up_0|NZ_CP027459.1_787628_789107_+	PRK10459, PRK10459, MOP flippase family protein	NA|427aa|down_0|NZ_CP027459.1_789383_790664_+	TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase WcaK	NA|407aa|down_1|NZ_CP027459.1_790660_791881_+	TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase WcaL	NA|465aa|down_2|NZ_CP027459.1_791891_793286_+	PRK10123, wcaM, putative colanic acid biosynthesis protein; Provisional	NA|298aa|down_3|NZ_CP027459.1_793460_794354_+	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF	NA|434aa|down_4|NZ_CP027459.1_794674_795976_+	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|389aa|down_5|NZ_CP027459.1_795977_797144_+	NA	NA|261aa|down_6|NZ_CP027459.1_797140_797923_+	cd06532, Glyco_transf_25, Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis	NA|341aa|down_7|NZ_CP027459.1_797988_799011_+	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|78aa|down_8|NZ_CP027459.1_799007_799241_+	NA	NA|209aa|down_9|NZ_CP027459.1_799461_800088_+	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins
GCF_003019075.1_ASM301907v1	NZ_CP027459	Escherichia coli strain 90-3040 chromosome, complete genome	2	1300089-1300212	2	CRISPRCasFinder	no	DEDDh	csa3,cas3,DEDDh,DinG,c2c9_V-U4,WYL,RT,cse2gr11,cas7,cas5,cas6e,cas2	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,c2c9_V-U4,WYL,RT,cse2gr11,cas7,cas5,cas6e,cas2	NA,NA|30aa|down_7|NZ_CP027459.1_1309107_1309197_+	NA|79aa|up_9|NZ_CP027459.1_1288961_1289198_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_8|NZ_CP027459.1_1289508_1290921_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_7|NZ_CP027459.1_1291477_1291687_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_6|NZ_CP027459.1_1292142_1292769_+	PRK09898, PRK09898, ferredoxin-like protein	NA|218aa|up_5|NZ_CP027459.1_1294903_1295557_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP027459.1_1295640_1296309_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP027459.1_1296305_1297091_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP027459.1_1297094_1297907_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP027459.1_1297918_1299523_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP027459.1_1299648_1299954_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP027459.1_1300526_1301783_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP027459.1_1301823_1303197_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP027459.1_1303411_1304053_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP027459.1_1304092_1305241_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP027459.1_1305531_1306743_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP027459.1_1306855_1307788_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP027459.1_1307784_1308810_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP027459.1_1309107_1309197_+	NA	NA|390aa|down_8|NZ_CP027459.1_1309362_1310532_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP027459.1_1310677_1311259_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_003019075.1_ASM301907v1	NZ_CP027459	Escherichia coli strain 90-3040 chromosome, complete genome	3	2109530-2109621	3	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,c2c9_V-U4,WYL,RT,cse2gr11,cas7,cas5,cas6e,cas2	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,c2c9_V-U4,WYL,RT,cse2gr11,cas7,cas5,cas6e,cas2	NA,NA	NA|503aa|up_9|NZ_CP027459.1_2097512_2099021_-	PRK15419, PRK15419, sodium/proline symporter PutP	NA|1321aa|up_8|NZ_CP027459.1_2099266_2103229_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP027459.1_2103268_2103907_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP027459.1_2104194_2105286_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP027459.1_2105285_2105978_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP027459.1_2105989_2106376_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP027459.1_2106383_2107184_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP027459.1_2107193_2107784_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP027459.1_2107794_2108289_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|369aa|up_0|NZ_CP027459.1_2108309_2109416_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP027459.1_2110044_2110641_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP027459.1_2110661_2110889_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP027459.1_2110926_2112168_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|420aa|down_3|NZ_CP027459.1_2112458_2113718_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP027459.1_2113978_2114899_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP027459.1_2114898_2115204_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP027459.1_2115296_2115896_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP027459.1_2115892_2118439_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP027459.1_2118438_2119611_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP027459.1_2119740_2120433_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_003019075.1_ASM301907v1	NZ_CP027459	Escherichia coli strain 90-3040 chromosome, complete genome	4	2372653-2372801	4,1	CRISPRCasFinder,PILER-CR	no		csa3,cas3,DEDDh,DinG,c2c9_V-U4,WYL,RT,cse2gr11,cas7,cas5,cas6e,cas2	Orphan	ATTTCTAAGCTGCCTGTACGGCAGTGAAC,ATTTCTAAGCTGCCTGTACGGCAGTGAAC	29,29	0	0	NA	NA	I-F:I-F	2,2	2	Orphan	csa3,cas3,DEDDh,DinG,c2c9_V-U4,WYL,RT,cse2gr11,cas7,cas5,cas6e,cas2	NA,NA|94aa|down_2|NZ_CP027459.1_2376534_2376816_-	NA|431aa|up_9|NZ_CP027459.1_2357698_2358991_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP027459.1_2359082_2360426_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP027459.1_2360436_2361048_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1356aa|up_6|NZ_CP027459.1_2361202_2365270_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP027459.1_2365404_2365899_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP027459.1_2366443_2367409_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP027459.1_2367531_2369298_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP027459.1_2369298_2371020_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP027459.1_2371061_2371766_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP027459.1_2372050_2372269_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP027459.1_2373012_2375289_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP027459.1_2375319_2375640_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|94aa|down_2|NZ_CP027459.1_2376534_2376816_-	NA	NA|119aa|down_3|NZ_CP027459.1_2378473_2378830_-	COG3747, COG3747, Phage terminase, small subunit [DNA replication, recombination, and repair]	NA|147aa|down_4|NZ_CP027459.1_2379118_2379559_-	COG1403, McrA, Restriction endonuclease [Defense mechanisms]	NA|99aa|down_5|NZ_CP027459.1_2379558_2379855_-	TIGR01560, phage-related_hypothetical_protein, uncharacterized phage protein (possible DNA packaging)	NA|113aa|down_6|NZ_CP027459.1_2379851_2380190_-	COG5614, COG5614, Bacteriophage head-tail adaptor [General function prediction only]	NA|392aa|down_7|NZ_CP027459.1_2380186_2381362_-	COG4695, COG4695, Phage-related protein [Function unknown]	NA|186aa|down_8|NZ_CP027459.1_2381399_2381957_-	COG3740, COG3740, Phage head maturation protease [General function prediction only]	NA|386aa|down_9|NZ_CP027459.1_2382012_2383170_-	COG4653, COG4653, Predicted phage phi-C31 gp36 major capsid-like protein [General function prediction only]
GCF_003019075.1_ASM301907v1	NZ_CP027459	Escherichia coli strain 90-3040 chromosome, complete genome	5	3250784-3250899	5	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,c2c9_V-U4,WYL,RT,cse2gr11,cas7,cas5,cas6e,cas2	Orphan	AACGCCTGATGCGACGCTGACGCGTCTTATC	31	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,c2c9_V-U4,WYL,RT,cse2gr11,cas7,cas5,cas6e,cas2	NA,NA	NA|393aa|up_9|NZ_CP027459.1_3238843_3240022_-	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter	NA|44aa|up_8|NZ_CP027459.1_3240123_3240255_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|552aa|up_7|NZ_CP027459.1_3240343_3241999_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|328aa|up_6|NZ_CP027459.1_3242162_3243146_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_5|NZ_CP027459.1_3243121_3244732_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_4|NZ_CP027459.1_3244715_3245414_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_3|NZ_CP027459.1_3245483_3246248_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|293aa|up_2|NZ_CP027459.1_3246333_3247212_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|NZ_CP027459.1_3247550_3249251_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|NZ_CP027459.1_3249261_3250764_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|NZ_CP027459.1_3250963_3251659_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|NZ_CP027459.1_3251733_3254085_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|NZ_CP027459.1_3254248_3257155_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|down_3|NZ_CP027459.1_3257166_3257826_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|272aa|down_4|NZ_CP027459.1_3257942_3258758_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_5|NZ_CP027459.1_3259012_3261367_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_6|NZ_CP027459.1_3261419_3262706_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_7|NZ_CP027459.1_3262705_3263695_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_8|NZ_CP027459.1_3263691_3264513_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|down_9|NZ_CP027459.1_3264515_3264893_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed
GCF_003019075.1_ASM301907v1	NZ_CP027459	Escherichia coli strain 90-3040 chromosome, complete genome	6	3273812-3273944	2	PILER-CR	no		csa3,cas3,DEDDh,DinG,c2c9_V-U4,WYL,RT,cse2gr11,cas7,cas5,cas6e,cas2	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DEDDh,DinG,c2c9_V-U4,WYL,RT,cse2gr11,cas7,cas5,cas6e,cas2	NA,NA	NA|126aa|up_9|NZ_CP027459.1_3264515_3264893_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP027459.1_3264899_3265742_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP027459.1_3265819_3266299_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP027459.1_3266490_3268353_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP027459.1_3268345_3268876_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP027459.1_3268983_3270315_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP027459.1_3270373_3270661_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP027459.1_3270657_3271944_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP027459.1_3271994_3272936_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP027459.1_3272950_3273721_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP027459.1_3274193_3275708_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP027459.1_3275738_3276881_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP027459.1_3277009_3278227_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP027459.1_3278300_3279854_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP027459.1_3279962_3280748_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP027459.1_3280753_3281344_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP027459.1_3281429_3281825_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP027459.1_3282085_3285307_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP027459.1_3285324_3286473_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP027459.1_3286928_3287750_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_003019075.1_ASM301907v1	NZ_CP027459	Escherichia coli strain 90-3040 chromosome, complete genome	7	3454431-3454543	6	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,c2c9_V-U4,WYL,RT,cse2gr11,cas7,cas5,cas6e,cas2	Orphan	CGGATGCGGCGTGAACGCCTTATCCGAC	28	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,c2c9_V-U4,WYL,RT,cse2gr11,cas7,cas5,cas6e,cas2	NA,NA|52aa|down_5|NZ_CP027459.1_3461580_3461736_-	NA|421aa|up_9|NZ_CP027459.1_3440934_3442197_-	PRK09692, PRK09692, integrase; Provisional	NA|340aa|up_8|NZ_CP027459.1_3442675_3443695_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_7|NZ_CP027459.1_3443698_3444262_-	PRK09825, idnK, gluconokinase	NA|344aa|up_6|NZ_CP027459.1_3444478_3445510_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_5|NZ_CP027459.1_3445533_3446298_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_4|NZ_CP027459.1_3446362_3447682_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_3|NZ_CP027459.1_3447748_3448747_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|361aa|up_2|NZ_CP027459.1_3450444_3451527_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP027459.1_3451526_3452627_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP027459.1_3452893_3454405_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP027459.1_3454651_3455095_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP027459.1_3455094_3457950_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|168aa|down_2|NZ_CP027459.1_3459377_3459881_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_3|NZ_CP027459.1_3459926_3460343_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_4|NZ_CP027459.1_3460504_3461509_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|52aa|down_5|NZ_CP027459.1_3461580_3461736_-	NA	NA|151aa|down_6|NZ_CP027459.1_3463332_3463785_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_7|NZ_CP027459.1_3463929_3464523_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_8|NZ_CP027459.1_3464593_3465307_+	PRK12742, PRK12742, SDR family oxidoreductase	NA|45aa|down_9|NZ_CP027459.1_3466113_3466248_+	pfam08052, PyrBI_leader, PyrBI operon leader peptide
GCF_003019075.1_ASM301907v1	NZ_CP027459	Escherichia coli strain 90-3040 chromosome, complete genome	8	4766757-4766877	7	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,c2c9_V-U4,WYL,RT,cse2gr11,cas7,cas5,cas6e,cas2	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGGGTG	43	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,c2c9_V-U4,WYL,RT,cse2gr11,cas7,cas5,cas6e,cas2	NA,NA|55aa|down_0|NZ_CP027459.1_4766947_4767112_-	NA|115aa|up_9|NZ_CP027459.1_4754477_4754822_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP027459.1_4755011_4755950_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP027459.1_4756048_4757038_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP027459.1_4757059_4758391_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP027459.1_4758416_4759625_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP027459.1_4759658_4761953_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP027459.1_4761966_4762356_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP027459.1_4762427_4763792_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP027459.1_4764066_4765398_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP027459.1_4765425_4766736_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP027459.1_4766947_4767112_-	NA	NA|234aa|down_1|NZ_CP027459.1_4767134_4767836_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP027459.1_4767940_4768837_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP027459.1_4768887_4769244_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP027459.1_4769485_4769851_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP027459.1_4770143_4771130_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_CP027459.1_4771199_4771682_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP027459.1_4771777_4772077_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP027459.1_4772066_4772471_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP027459.1_4772473_4772779_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_003019075.1_ASM301907v1	NZ_CP027459	Escherichia coli strain 90-3040 chromosome, complete genome	9	5186166-5186249	8	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,c2c9_V-U4,WYL,RT,cse2gr11,cas7,cas5,cas6e,cas2	Orphan	GTTCCCCGCGCCAGCGGGGATAA	23	0	0	NA	NA	I-E	1	1	Orphan	csa3,cas3,DEDDh,DinG,c2c9_V-U4,WYL,RT,cse2gr11,cas7,cas5,cas6e,cas2	NA,NA	NA|447aa|up_9|NZ_CP027459.1_5171186_5172527_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|919aa|up_8|NZ_CP027459.1_5172758_5175515_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_7|NZ_CP027459.1_5175571_5176873_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_6|NZ_CP027459.1_5176920_5179155_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_5|NZ_CP027459.1_5179232_5179481_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_4|NZ_CP027459.1_5179480_5179816_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_3|NZ_CP027459.1_5179886_5180678_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP027459.1_5180905_5182543_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP027459.1_5182630_5183929_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP027459.1_5185152_5185824_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|426aa|down_0|NZ_CP027459.1_5187803_5189081_-	cd06174, MFS, Major Facilitator Superfamily	NA|485aa|down_1|NZ_CP027459.1_5190226_5191681_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_2|NZ_CP027459.1_5191774_5193112_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_3|NZ_CP027459.1_5193089_5193869_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_4|NZ_CP027459.1_5193865_5194726_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_5|NZ_CP027459.1_5194873_5195449_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_6|NZ_CP027459.1_5195465_5195726_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|122aa|down_7|NZ_CP027459.1_5197064_5197430_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_8|NZ_CP027459.1_5197745_5199545_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_9|NZ_CP027459.1_5199544_5201257_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_003019075.1_ASM301907v1	NZ_CP027459	Escherichia coli strain 90-3040 chromosome, complete genome	10	5212663-5212753	9	CRISPRCasFinder	no	cse2gr11,cas7,cas5,cas6e,cas2	csa3,cas3,DEDDh,DinG,c2c9_V-U4,WYL,RT,cse2gr11,cas7,cas5,cas6e,cas2	Type I-E	TGTGTTCCCCGCGCCAGCGGGGATAAACCG	30	0	0	NA	NA	I-E	1	1	TypeI-E	csa3,cas3,DEDDh,DinG,c2c9_V-U4,WYL,RT,cse2gr11,cas7,cas5,cas6e,cas2	NA,NA	NA|600aa|up_9|NZ_CP027459.1_5197745_5199545_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_8|NZ_CP027459.1_5199544_5201257_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_7|NZ_CP027459.1_5201330_5202065_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_6|NZ_CP027459.1_5202329_5202482_+	pfam01848, HOK_GEF, Hok/gef family	NA|405aa|up_5|NZ_CP027459.1_5204657_5205871_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cse2gr11|178aa|up_4|NZ_CP027459.1_5208345_5208879_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|358aa|up_3|NZ_CP027459.1_5208893_5209967_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_2|NZ_CP027459.1_5209977_5210724_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_1|NZ_CP027459.1_5210705_5211356_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP027459.1_5212273_5212567_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP027459.1_5212834_5213872_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP027459.1_5214123_5215032_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP027459.1_5215033_5216461_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP027459.1_5216460_5217066_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP027459.1_5217115_5217439_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP027459.1_5217632_5217944_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP027459.1_5217962_5218673_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP027459.1_5218672_5219152_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP027459.1_5219148_5220198_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP027459.1_5220178_5220940_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
