assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003019155.1_ASM301915v1	NZ_CP027544	Escherichia coli strain 2013C-3264 chromosome, complete genome	1	131990-132113	1	CRISPRCasFinder	no	DEDDh	DEDDh,RT,c2c9_V-U4,cas3,csa3,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,c2c9_V-U4,cas3,csa3,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DinG	NA,NA|30aa|down_7|NZ_CP027544.1_141009_141099_+	NA|471aa|up_9|NZ_CP027544.1_121443_122856_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP027544.1_123412_123622_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP027544.1_124077_124704_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP027544.1_124724_126827_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP027544.1_126839_127478_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP027544.1_127541_128210_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP027544.1_128206_128992_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP027544.1_128995_129808_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP027544.1_129819_131424_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP027544.1_131549_131855_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP027544.1_132427_133684_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP027544.1_133724_135098_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP027544.1_135312_135954_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP027544.1_135993_137142_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP027544.1_137432_138644_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP027544.1_138756_139689_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP027544.1_139685_140711_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP027544.1_141009_141099_+	NA	NA|390aa|down_8|NZ_CP027544.1_141264_142434_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP027544.1_142579_143161_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_003019155.1_ASM301915v1	NZ_CP027544	Escherichia coli strain 2013C-3264 chromosome, complete genome	2	881090-881181	2	CRISPRCasFinder	no		DEDDh,RT,c2c9_V-U4,cas3,csa3,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,c2c9_V-U4,cas3,csa3,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DinG	NA|70aa|up_9|NZ_CP027544.1_870340_870550_-,NA	NA|70aa|up_9|NZ_CP027544.1_870340_870550_-	NA	NA|1321aa|up_8|NZ_CP027544.1_870604_874567_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP027544.1_874606_875245_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP027544.1_875532_876624_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP027544.1_876623_877316_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP027544.1_877327_877714_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP027544.1_877721_878522_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP027544.1_878531_879122_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP027544.1_879132_879627_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP027544.1_879647_880976_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP027544.1_881604_882201_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP027544.1_882221_882449_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP027544.1_882486_883728_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|418aa|down_3|NZ_CP027544.1_884020_885274_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP027544.1_885533_886454_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP027544.1_886453_886759_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP027544.1_886851_887451_-	PRK04976, torD, chaperone protein TorD; Validated	NA|852aa|down_7|NZ_CP027544.1_887438_889994_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP027544.1_889993_891166_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP027544.1_891295_891988_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_003019155.1_ASM301915v1	NZ_CP027544	Escherichia coli strain 2013C-3264 chromosome, complete genome	3	1778701-1779523	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,RT,c2c9_V-U4,cas3,csa3,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DinG	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	13,13,13	13	TypeI-E	DEDDh,RT,c2c9_V-U4,cas3,csa3,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DinG	NA,NA	NA|254aa|up_9|NZ_CP027544.1_1770513_1771275_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP027544.1_1771255_1772305_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP027544.1_1772301_1772781_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP027544.1_1772780_1773491_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP027544.1_1773509_1773821_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP027544.1_1774014_1774338_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP027544.1_1774387_1774993_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP027544.1_1774992_1776420_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP027544.1_1776421_1777330_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP027544.1_1777581_1778619_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas1|307aa|down_0|NZ_CP027544.1_1779912_1780833_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_1|NZ_CP027544.1_1780829_1781480_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_2|NZ_CP027544.1_1781461_1782208_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_3|NZ_CP027544.1_1782218_1783274_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_4|NZ_CP027544.1_1783285_1783822_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_5|NZ_CP027544.1_1783818_1785381_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_6|NZ_CP027544.1_1785478_1788178_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_7|NZ_CP027544.1_1788371_1788524_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_8|NZ_CP027544.1_1788788_1789523_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP027544.1_1789596_1791309_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_003019155.1_ASM301915v1	NZ_CP027544	Escherichia coli strain 2013C-3264 chromosome, complete genome	4	1805223-1805556	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,RT,c2c9_V-U4,cas3,csa3,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DinG	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	Unclear	DEDDh,RT,c2c9_V-U4,cas3,csa3,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DinG	NA,NA|47aa|down_1|NZ_CP027544.1_1806704_1806845_+	NA|424aa|up_9|NZ_CP027544.1_1793866_1795138_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP027544.1_1795128_1795389_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP027544.1_1795405_1795981_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP027544.1_1796128_1796989_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP027544.1_1796985_1797765_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP027544.1_1797742_1799152_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP027544.1_1799173_1800628_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP027544.1_1800697_1801483_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP027544.1_1801801_1803079_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP027544.1_1803105_1804584_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP027544.1_1805894_1806566_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP027544.1_1806704_1806845_+	NA	NA|291aa|down_2|NZ_CP027544.1_1806858_1807731_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP027544.1_1807790_1809089_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP027544.1_1809176_1810814_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP027544.1_1811041_1811833_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP027544.1_1811903_1812239_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP027544.1_1812238_1812487_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP027544.1_1812564_1814799_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP027544.1_1814846_1816148_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
GCF_003019155.1_ASM301915v1	NZ_CP027544	Escherichia coli strain 2013C-3264 chromosome, complete genome	5	4852854-4853002	5	CRISPRCasFinder	no		DEDDh,RT,c2c9_V-U4,cas3,csa3,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DinG	Orphan	GTTCACTGCCGTACAGGCAGCTTAGAAAT	29	0	0	NA	NA	I-F	2	2	Orphan	DEDDh,RT,c2c9_V-U4,cas3,csa3,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DinG	NA,NA	NA|551aa|up_9|NZ_CP027544.1_4839261_4840914_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_8|NZ_CP027544.1_4841057_4841957_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_7|NZ_CP027544.1_4842452_4843148_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|NZ_CP027544.1_4843573_4845232_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|319aa|up_5|NZ_CP027544.1_4845228_4846185_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|NZ_CP027544.1_4846335_4847451_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NZ_CP027544.1_4847447_4849394_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|NZ_CP027544.1_4849466_4849691_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|NZ_CP027544.1_4850013_4850334_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NZ_CP027544.1_4850364_4852641_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|73aa|down_0|NZ_CP027544.1_4853385_4853604_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NZ_CP027544.1_4853888_4854593_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NZ_CP027544.1_4854634_4856356_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NZ_CP027544.1_4856356_4858123_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NZ_CP027544.1_4858245_4859211_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|1382aa|down_5|NZ_CP027544.1_4860383_4864529_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_6|NZ_CP027544.1_4864683_4865295_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_7|NZ_CP027544.1_4865305_4866649_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_8|NZ_CP027544.1_4866739_4868032_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|815aa|down_9|NZ_CP027544.1_4868270_4870715_+	PRK14990, PRK14990, anaerobic dimethyl sulfoxide reductase subunit A; Provisional
