assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003019175.1_ASM301917v1	NZ_CP027546	Escherichia coli strain 2013C-4187 chromosome, complete genome	1	2710969-2711546	1,1,1	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DinG,PrimPol,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	9,8,8	9	TypeI-E	DinG,PrimPol,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|254aa|up_9|NZ_CP027546.1_2702842_2703604_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP027546.1_2703584_2704634_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP027546.1_2704630_2705110_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP027546.1_2705109_2705820_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP027546.1_2705838_2706150_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP027546.1_2706343_2706667_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP027546.1_2706716_2707322_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP027546.1_2707321_2708749_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP027546.1_2708750_2709659_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP027546.1_2709910_2710948_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP027546.1_2711642_2711936_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP027546.1_2711935_2712856_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP027546.1_2712852_2713503_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP027546.1_2713484_2714231_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP027546.1_2714241_2715297_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|163aa|down_5|NZ_CP027546.1_2715359_2715848_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP027546.1_2715844_2717407_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP027546.1_2717504_2720204_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP027546.1_2720397_2720550_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP027546.1_2720814_2721549_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_003019175.1_ASM301917v1	NZ_CP027546	Escherichia coli strain 2013C-4187 chromosome, complete genome	2	2737248-2737702	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DinG,PrimPol,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGA,CGGTTTATCCCCGCTGGCGCGGGGA	29,25,25	0	0	NA	NA	I-E:I-E:I-E	7,7,7	7	Unclear	DinG,PrimPol,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|47aa|down_1|NZ_CP027546.1_2738851_2738992_+	NA|87aa|up_9|NZ_CP027546.1_2727154_2727415_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_8|NZ_CP027546.1_2727431_2728007_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_7|NZ_CP027546.1_2728154_2729015_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_6|NZ_CP027546.1_2729011_2729791_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_5|NZ_CP027546.1_2729768_2731106_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_4|NZ_CP027546.1_2731199_2732654_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|227aa|up_3|NZ_CP027546.1_2732723_2733404_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|32aa|up_2|NZ_CP027546.1_2733413_2733509_-	PRK06935, PRK06935, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	NA|426aa|up_1|NZ_CP027546.1_2733826_2735104_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP027546.1_2735130_2736609_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP027546.1_2738041_2738713_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP027546.1_2738851_2738992_+	NA	NA|291aa|down_2|NZ_CP027546.1_2739005_2739878_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP027546.1_2739937_2741236_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP027546.1_2741323_2742961_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP027546.1_2743188_2743980_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP027546.1_2744050_2744386_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP027546.1_2744385_2744634_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP027546.1_2744711_2746946_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP027546.1_2746993_2748295_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
GCF_003019175.1_ASM301917v1	NZ_CP027546	Escherichia coli strain 2013C-4187 chromosome, complete genome	3	4478181-4478327	3	CRISPRCasFinder	no		DinG,PrimPol,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	51	0	0	NA	NA	NA	1	1	Orphan	DinG,PrimPol,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|504aa|up_5|NZ_CP027546.1_4469440_4470952_+,NA|529aa|down_7|NZ_CP027546.1_4488022_4489609_-	NA|132aa|up_9|NZ_CP027546.1_4466817_4467213_-	cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|238aa|up_8|NZ_CP027546.1_4467343_4468057_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_7|NZ_CP027546.1_4468127_4468721_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_6|NZ_CP027546.1_4468865_4469318_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|504aa|up_5|NZ_CP027546.1_4469440_4470952_+	NA	NA|338aa|up_4|NZ_CP027546.1_4471128_4472142_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_3|NZ_CP027546.1_4472303_4472720_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_2|NZ_CP027546.1_4472765_4473269_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|952aa|up_1|NZ_CP027546.1_4474711_4477567_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP027546.1_4477566_4478010_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP027546.1_4478363_4479875_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP027546.1_4480141_4481242_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP027546.1_4481241_4482324_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP027546.1_4482442_4483945_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP027546.1_4484074_4485094_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|421aa|down_5|NZ_CP027546.1_4485537_4486800_+	PRK09692, PRK09692, integrase; Provisional	NA|280aa|down_6|NZ_CP027546.1_4487043_4487883_-	PRK11001, mtlR, MltR family transcriptional regulator	NA|529aa|down_7|NZ_CP027546.1_4488022_4489609_-	NA	NA|226aa|down_8|NZ_CP027546.1_4489898_4490576_+	pfam01527, HTH_Tnp_1, Transposase	NA|116aa|down_9|NZ_CP027546.1_4490575_4490923_+	pfam05717, TnpB_IS66, IS66 Orf2 like protein
