The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP027512	Enterococcus faecium strain AUSMDU00004028 chromosome, complete genome	2855729	586721	594352	2855729		Streptococcus_phage(87.5%)	9	NA	NA
WP_000420682.1|586721_587036_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
WP_000985015.1|587051_587438_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000813488.1|587466_588852_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000879507.1|588854_589007_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000398284.1|589029_590235_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
WP_002286940.1|591018_592929_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	29.8	7.1e-37
WP_032509114.1|593032_593257_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	97.1	8.5e-27
WP_000342539.1|593373_593871_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_000506270.1|593845_594352_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
>prophage 2
NZ_CP027512	Enterococcus faecium strain AUSMDU00004028 chromosome, complete genome	2855729	599465	612482	2855729	transposase,integrase	Streptococcus_phage(90.91%)	16	598058:598072	610451:610465
598058:598072	attL	TGTAACAAAAGAAGA	NA	NA	NA	NA
WP_000804748.1|599465_601643_+	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
WP_000769868.1|601639_602641_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_001224318.1|602637_603570_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
WP_012386611.1|603844_603931_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_000691749.1|603946_605866_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.4	0.0e+00
WP_011058338.1|605966_606152_+	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	67.9	3.9e-17
WP_020944828.1|606211_606565_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	99.1	1.7e-58
WP_013670292.1|606769_606841_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000804885.1|607069_607492_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_000857133.1|607488_607719_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_001845478.1|607944_608196_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000814511.1|608179_608383_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_010785527.1|608464_609682_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	99.8	8.3e-233
WP_002293844.1|609913_610240_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_002296196.1|610307_611021_+	class A sortase	NA	NA	NA	NA	NA
610451:610465	attR	TGTAACAAAAGAAGA	NA	NA	NA	NA
WP_002297185.1|611186_612482_-|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
>prophage 3
NZ_CP027512	Enterococcus faecium strain AUSMDU00004028 chromosome, complete genome	2855729	733752	742224	2855729		Streptococcus_phage(66.67%)	9	NA	NA
WP_002294039.1|733752_734397_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	52.6	4.2e-58
WP_002292340.1|734411_734741_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288071.1|734754_735693_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	34.4	3.3e-35
WP_002288073.1|735728_736553_+	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_002288076.1|736545_736893_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	41.1	5.1e-18
WP_002288078.1|736961_737834_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	60.4	3.1e-88
WP_002294035.1|737942_739064_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_002288081.1|739117_739720_-	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	58.6	1.7e-53
WP_002288083.1|740034_742224_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	66.6	1.8e-286
>prophage 4
NZ_CP027512	Enterococcus faecium strain AUSMDU00004028 chromosome, complete genome	2855729	852726	951448	2855729	capsid,tRNA,integrase,head,protease,terminase,portal,transposase,holin,tail	Enterococcus_phage(23.26%)	111	878509:878525	938096:938112
WP_002286621.1|852726_855525_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2H4UVG0	Bodo_saltans_virus	26.4	1.6e-74
WP_002286618.1|855573_857100_-	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	35.3	8.9e-75
WP_002286616.1|857114_857762_-	metal-dependent transcriptional regulator	NA	NA	NA	NA	NA
WP_002286678.1|857945_858275_-	DUF4828 domain-containing protein	NA	NA	NA	NA	NA
WP_002286614.1|858451_859180_+	DNA/RNA nuclease SfsA	NA	NA	NA	NA	NA
WP_002286612.1|859195_860209_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_002286608.1|860208_861486_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	28.8	5.8e-35
WP_002286607.1|861548_864251_+	sigma-54-dependent transcriptional regulator	NA	NA	NA	NA	NA
WP_002286606.1|864402_864720_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002286604.1|864749_865070_+	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002286601.1|865177_866638_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002286598.1|866705_866927_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286596.1|866957_867140_+	DUF3188 domain-containing protein	NA	NA	NA	NA	NA
WP_002286592.1|867139_867553_+	DUF3284 domain-containing protein	NA	NA	NA	NA	NA
WP_002286589.1|867675_868857_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002286587.1|869387_870527_-|integrase	site-specific integrase	integrase	Q9AZR0	Lactococcus_phage	47.1	2.6e-95
WP_002303012.1|870825_871461_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296616.1|871573_872209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303013.1|872242_872704_-	DUF4429 domain-containing protein	NA	A0A0F6N4L7	Staphylococcus_phage	34.8	4.5e-06
WP_002296613.1|872833_873265_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_002296612.1|873282_873603_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SDR1	Streptococcus_phage	40.2	2.0e-13
WP_002290310.1|873901_874678_+	phage antirepressor protein	NA	A0A1Q1PVU2	Staphylococcus_phage	53.8	1.1e-73
WP_002296611.1|874692_874896_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002286573.1|874911_875250_+	DUF771 domain-containing protein	NA	NA	NA	NA	NA
WP_002296610.1|875236_875416_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286568.1|875458_875929_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286562.1|876015_876714_+	phage regulatory protein	NA	D2IYT0	Enterococcus_phage	34.6	1.7e-25
WP_002286559.1|876891_877233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286557.1|877225_877897_+	DUF1071 domain-containing protein	NA	A0A1B1P7F0	Bacillus_phage	47.4	4.2e-29
WP_002286553.1|877902_878589_+	hypothetical protein	NA	C9E2N1	Enterococcus_phage	69.1	3.2e-88
878509:878525	attL	ATTAATTTCAAAAATAA	NA	NA	NA	NA
WP_002286552.1|878591_879341_+	helix-turn-helix domain-containing protein	NA	A0A1L2BY83	Clostridium_phage	54.0	1.7e-31
WP_002286696.1|879352_879622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286695.1|879783_880086_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296606.1|880082_880244_+	antitoxin	NA	NA	NA	NA	NA
WP_002286694.1|880240_880546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286550.1|880545_880902_+	DUF1140 family protein	NA	A0A2H4JAZ4	uncultured_Caudovirales_phage	37.4	3.1e-10
WP_002296604.1|880861_881107_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286547.1|881103_881523_+	hypothetical protein	NA	D2IZL0	Enterococcus_phage	54.3	4.1e-30
WP_002286545.1|881519_882077_+	DUF1642 domain-containing protein	NA	A0A0C5KKV2	Enterococcus_phage	36.2	2.8e-10
WP_002286693.1|882073_882370_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286542.1|882446_882860_+	autolysin	NA	C9E2P5	Enterococcus_phage	81.0	1.5e-56
WP_002300143.1|883317_883593_-	hypothetical protein	NA	A0A2H4JEH2	uncultured_Caudovirales_phage	45.7	9.9e-17
WP_002311723.1|884046_884253_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296600.1|884448_884616_+	thymidylate synthase	NA	NA	NA	NA	NA
WP_002286540.1|884641_884986_+	HNH endonuclease	NA	A0A1B1P757	Bacillus_phage	57.1	3.8e-26
WP_002296599.1|884990_885272_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286538.1|885374_885689_+|terminase	terminase	terminase	A0A1S7FYW6	Listeria_phage	37.9	3.3e-08
WP_002286533.1|885666_887361_+|terminase	terminase large subunit	terminase	A0A1B1P766	Bacillus_phage	49.6	3.0e-148
WP_002286530.1|887380_888559_+|portal	phage portal protein	portal	A0A1B1P754	Bacillus_phage	40.4	5.4e-80
WP_002286527.1|888521_889208_+|protease	Clp protease ClpP	protease	A0A2I6PDD0	Staphylococcus_phage	39.7	1.0e-30
WP_002286525.1|889207_890368_+|capsid	phage major capsid protein	capsid	A0A1B1P752	Bacillus_phage	50.1	1.8e-99
WP_002286524.1|890377_891253_+	hypothetical protein	NA	D2IYX3	Enterococcus_phage	74.2	5.6e-130
WP_002286523.1|891249_891561_+	hypothetical protein	NA	A0A1B1P751	Bacillus_phage	42.1	6.3e-12
WP_002286522.1|891550_891904_+|head	phage head closure protein	head	NA	NA	NA	NA
WP_002296598.1|891893_892295_+	hypothetical protein	NA	A0A1B1P759	Bacillus_phage	33.3	1.1e-13
WP_002286516.1|892287_892692_+	hypothetical protein	NA	R4IBU7	Listeria_phage	29.5	6.1e-07
WP_002305379.1|892703_893309_+	hypothetical protein	NA	Q8W5Z9	Listeria_phage	41.6	1.1e-33
WP_002286510.1|893328_893691_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305377.1|893693_893876_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060797415.1|893892_897324_+|tail	phage tail tape measure protein	tail	A0A1D3SNL5	Enterococcus_phage	44.7	8.2e-68
WP_002286500.1|897374_898112_+|tail	phage tail protein	tail	NA	NA	NA	NA
WP_002296595.1|898121_900413_+	hypothetical protein	NA	A0A1D3SNL1	Enterococcus_phage	30.0	1.6e-88
WP_079504073.1|900436_902563_+	hypothetical protein	NA	A0A060AI60	Enterococcus_phage	40.1	1.4e-62
WP_002286491.1|902725_903172_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296594.1|903173_903311_+	XkdX family protein	NA	NA	NA	NA	NA
WP_002286686.1|903348_903642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286683.1|903638_903863_+|holin	holin	holin	NA	NA	NA	NA
WP_002286484.1|903859_904885_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A139ZVY1	Enterococcus_phage	61.3	2.1e-64
WP_087046766.1|905824_906986_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.2	4.1e-80
WP_002286474.1|907909_908317_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296902.1|908330_908732_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286473.1|908733_909105_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286680.1|909140_909443_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286470.1|909691_909892_-|integrase	tyrosine-type recombinase/integrase	integrase	Q9AZR0	Lactococcus_phage	75.7	4.6e-08
WP_002286469.1|910196_911429_-	aminopeptidase	NA	NA	NA	NA	NA
WP_079504074.1|911682_912252_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002286465.1|912429_912870_-	flavodoxin	NA	NA	NA	NA	NA
WP_002294533.1|913027_913792_+	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_002286461.1|913823_914747_+	YihY/virulence factor BrkB family protein	NA	NA	NA	NA	NA
WP_106913768.1|914822_915962_+	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
WP_002286455.1|915954_916755_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_002286453.1|916754_917582_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_002321540.1|917559_918294_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_002286449.1|918393_919260_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	62.5	3.7e-102
WP_002286442.1|919273_919846_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	49.2	8.3e-42
WP_002296544.1|919867_920896_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	43.2	2.2e-69
WP_002294531.1|920993_921845_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	39.0	1.3e-38
WP_002296543.1|921879_923913_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077495121.1|923956_925237_+	EpaQ family protein	NA	NA	NA	NA	NA
WP_002289081.1|925446_926253_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002289079.1|926264_927485_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.9	1.1e-11
WP_002289078.1|927474_929061_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_079504075.1|929099_931238_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_002289074.1|931605_932589_-	serine hydrolase	NA	NA	NA	NA	NA
WP_002289073.1|932966_934358_+	sugar transferase	NA	NA	NA	NA	NA
WP_002289071.1|934373_935414_+	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	35.3	2.4e-07
WP_002289069.1|935432_936518_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_002289068.1|936550_937513_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_002292877.1|937505_938933_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
938096:938112	attR	ATTAATTTCAAAAATAA	NA	NA	NA	NA
WP_002302730.1|938934_940005_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002292875.1|939991_941413_+	oligosaccharide flippase family protein	NA	NA	NA	NA	NA
WP_002289359.1|941425_942433_+	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	35.9	1.2e-40
WP_002292874.1|942444_943449_+	N-acetylneuraminate synthase	NA	NA	NA	NA	NA
WP_002289362.1|943445_944594_+	UDP-N-acetylglucosamine 2-epimerase (hydrolyzing)	NA	NA	NA	NA	NA
WP_002289363.1|944566_945244_+	acetyltransferase	NA	NA	NA	NA	NA
WP_002326811.1|945233_946376_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A2K9L0G1	Tupanvirus	27.9	2.4e-24
WP_002289366.1|946388_947366_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_002289368.1|947365_948274_+	dehydrogenase	NA	NA	NA	NA	NA
WP_002289370.1|948274_949027_+	acylneuraminate cytidylyltransferase family protein	NA	NA	NA	NA	NA
WP_002289372.1|949031_949979_+	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SKV4	Klosneuvirus	37.7	2.8e-50
WP_002296623.1|950152_951448_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	37.5	3.9e-55
>prophage 5
NZ_CP027512	Enterococcus faecium strain AUSMDU00004028 chromosome, complete genome	2855729	1014197	1074923	2855729	tRNA,transposase	Lysinibacillus_phage(36.36%)	46	NA	NA
WP_002287651.1|1014197_1016138_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	35.2	3.3e-114
WP_079504077.1|1016361_1017210_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002302928.1|1017503_1019657_+	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_002296740.1|1019842_1020652_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_002295362.1|1020944_1022381_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	29.0	3.8e-43
WP_002290958.1|1022550_1023747_+	multidrug efflux MFS transporter	NA	NA	NA	NA	NA
WP_002295359.1|1023808_1023994_-	YjzD family protein	NA	NA	NA	NA	NA
WP_002303521.1|1024224_1027539_+	DNA polymerase III subunit alpha	NA	R4TB75	Streptomyces_phage	33.0	1.8e-149
WP_002304759.1|1027706_1028669_+	6-phosphofructokinase	NA	NA	NA	NA	NA
WP_002295355.1|1028742_1030527_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_002295354.1|1030561_1031464_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002295352.1|1031649_1032219_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_002290970.1|1032276_1032456_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_002297185.1|1032625_1033921_-|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
WP_002295350.1|1034147_1035569_+	NADP-dependent phosphogluconate dehydrogenase	NA	A0A1D8KPW3	Synechococcus_phage	31.1	4.2e-34
WP_002290973.1|1035761_1036448_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	31.2	4.8e-28
WP_002298265.1|1036444_1037950_+	HAMP domain-containing histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	25.1	3.9e-06
WP_002297185.1|1038057_1039353_-|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
WP_002286258.1|1039686_1040097_+	Spx/MgsR family RNA polymerase-binding regulatory protein	NA	NA	NA	NA	NA
WP_002286247.1|1040110_1040467_+	arsenate reductase	NA	NA	NA	NA	NA
WP_002297218.1|1047875_1049171_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002297185.1|1049354_1050650_-|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
WP_002288809.1|1051001_1051877_+	PRD domain-containing protein	NA	NA	NA	NA	NA
WP_002288811.1|1051980_1052745_+	carbohydrate deacetylase	NA	NA	NA	NA	NA
WP_002303569.1|1052761_1054174_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_002303716.1|1054190_1055516_+	maltose-6'-phosphate glucosidase	NA	NA	NA	NA	NA
WP_002288815.1|1055528_1055987_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002288817.1|1056278_1057580_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002295336.1|1057606_1057867_+	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_002288819.1|1058865_1060101_-	glycosyl transferase	NA	NA	NA	NA	NA
WP_002288821.1|1060667_1061495_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002288823.1|1061767_1062538_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_002288825.1|1062755_1063823_+	L-ascorbate 6-phosphate lactonase	NA	NA	NA	NA	NA
WP_002295331.1|1063840_1064302_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_002303570.1|1064321_1065806_+	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA	NA
WP_002288830.1|1065848_1066148_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002288832.1|1066162_1066801_+	3-keto-L-gulonate-6-phosphate decarboxylase UlaD	NA	NA	NA	NA	NA
WP_002289048.1|1066805_1067666_+	L-ribulose-5-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_002295327.1|1067655_1068366_+	L-ribulose-5-phosphate 4-epimerase	NA	NA	NA	NA	NA
WP_002289050.1|1068597_1069032_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002289065.1|1069128_1069428_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289063.1|1069696_1069891_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000222572.1|1070157_1071111_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002297183.1|1071335_1073198_+	PRD domain-containing protein	NA	NA	NA	NA	NA
WP_002291790.1|1073197_1073530_+	PRD domain-containing protein	NA	NA	NA	NA	NA
WP_002287107.1|1073672_1074923_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
>prophage 6
NZ_CP027512	Enterococcus faecium strain AUSMDU00004028 chromosome, complete genome	2855729	1228078	1237139	2855729		Gordonia_phage(16.67%)	9	NA	NA
WP_002288023.1|1228078_1229374_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.1	4.5e-19
WP_002297115.1|1229553_1229931_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002288021.1|1230186_1230915_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	41.4	4.6e-45
WP_002295474.1|1230914_1231169_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002288017.1|1231170_1231842_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_002288015.1|1231842_1234065_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.3	1.9e-150
WP_002288013.1|1234049_1235489_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.1	5.3e-53
WP_002321731.1|1235520_1236564_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.7	2.7e-62
WP_002288010.1|1236560_1237139_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	37.4	1.3e-26
>prophage 7
NZ_CP027512	Enterococcus faecium strain AUSMDU00004028 chromosome, complete genome	2855729	1457784	1516026	2855729	transposase	Streptococcus_phage(33.33%)	51	NA	NA
WP_002326839.1|1457784_1458693_-|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_002295911.1|1460297_1460846_+	AAA family ATPase	NA	S4W1R9	Pandoravirus	29.4	3.3e-11
WP_002302625.1|1461101_1461614_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002295913.1|1461657_1462614_-	sce7725 family protein	NA	NA	NA	NA	NA
WP_002303824.1|1462619_1463309_-	hypothetical protein	NA	U5PU21	Bacillus_phage	36.5	3.7e-20
WP_002321153.1|1463434_1464094_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_002295916.1|1464093_1464930_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_002295917.1|1464950_1466402_-	amidase	NA	NA	NA	NA	NA
WP_002295918.1|1466536_1467481_-	dihydroorotate oxidase	NA	A0A1V0SH91	Hokovirus	44.4	5.2e-65
WP_002295919.1|1467564_1468212_-	lipoprotein	NA	NA	NA	NA	NA
WP_002295921.1|1468441_1469608_-	class I SAM-dependent methyltransferase	NA	A0A2K9L4K8	Tupanvirus	39.3	1.6e-47
WP_002295923.1|1469758_1470574_-	maltodextrose utilization protein MalA	NA	NA	NA	NA	NA
WP_002288156.1|1470586_1471438_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_002288157.1|1471440_1472742_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_002288159.1|1472888_1474148_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_002301996.1|1474249_1476016_-	alpha-glycosidase	NA	NA	NA	NA	NA
WP_002303243.1|1476404_1477253_+	YitT family protein	NA	NA	NA	NA	NA
WP_002301993.1|1477352_1477787_+	VOC family protein	NA	NA	NA	NA	NA
WP_002288163.1|1477966_1478377_+	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
WP_002301992.1|1478433_1478874_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002305261.1|1478976_1480056_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_002303246.1|1483131_1484214_-	mannonate dehydratase	NA	NA	NA	NA	NA
WP_002303247.1|1484204_1485851_-	mannitol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_002288176.1|1486034_1486697_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002288178.1|1486840_1487404_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_002288179.1|1487413_1488943_+	alkyl hydroperoxide reductase subunit F	NA	A0A249XZT7	Enterococcus_phage	33.0	3.9e-38
WP_002296623.1|1489082_1490378_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	37.5	3.9e-55
WP_002288180.1|1490610_1490961_+	DUF2200 domain-containing protein	NA	NA	NA	NA	NA
WP_002288181.1|1491059_1491590_+	membrane protein	NA	NA	NA	NA	NA
WP_002295931.1|1491743_1492895_+	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_002303249.1|1493003_1495043_-	penicillin-binding protein 4	NA	NA	NA	NA	NA
WP_002303250.1|1495100_1495856_-	LCP family protein	NA	NA	NA	NA	NA
WP_002303251.1|1495947_1497078_-	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA	NA
WP_002287763.1|1497618_1497825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002287766.1|1497840_1498455_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_002287767.1|1498601_1499285_-	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
WP_002295936.1|1499393_1499852_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_002287770.1|1499935_1501699_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_002295937.1|1501919_1503380_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002295938.1|1503587_1504514_-	glutaminase A	NA	NA	NA	NA	NA
WP_002303350.1|1505678_1506638_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002296683.1|1507060_1508275_-	ammonium transporter	NA	NA	NA	NA	NA
WP_002290686.1|1508615_1508858_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_002295944.1|1508889_1509447_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_002295945.1|1509459_1509648_-	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
WP_002295947.1|1509660_1510227_-	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
WP_002287525.1|1510661_1511810_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
WP_002287522.1|1511826_1512231_-|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
WP_002295138.1|1513347_1513821_+	DUF2975 domain-containing protein	NA	NA	NA	NA	NA
WP_002295139.1|1513829_1514057_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002347126.1|1514490_1516026_-|transposase	IS1182-like element ISEfa7 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	48.2	3.3e-125
>prophage 8
NZ_CP027512	Enterococcus faecium strain AUSMDU00004028 chromosome, complete genome	2855729	1546637	1599363	2855729	tRNA,protease,transposase,integrase	Bacillus_phage(25.0%)	53	1543096:1543113	1576264:1576281
1543096:1543113	attL	ACAACATTTTCTTATTTT	NA	NA	NA	NA
WP_002296628.1|1546637_1547477_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002296627.1|1547661_1548549_+	rotamase	NA	NA	NA	NA	NA
WP_002311093.1|1549142_1549838_-	fructose-6-phosphate aldolase	NA	E3SKN5	Synechococcus_phage	31.5	1.0e-22
WP_002296624.1|1549821_1550220_-	PTS glucitol/sorbitol transporter subunit IIA	NA	NA	NA	NA	NA
WP_002287107.1|1550628_1551879_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
WP_002296760.1|1552020_1553016_-	PTS glucitol/sorbitol transporter subunit IIB	NA	NA	NA	NA	NA
WP_002289423.1|1553033_1553588_-	PTS sorbitol transporter subunit IIC	NA	NA	NA	NA	NA
WP_002289422.1|1553575_1554067_-	DeoR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002289421.1|1554059_1555928_-	HTH domain-containing protein	NA	NA	NA	NA	NA
WP_002289420.1|1555946_1556747_-	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	26.2	2.6e-09
WP_002289418.1|1556970_1557186_+	DUF378 domain-containing protein	NA	NA	NA	NA	NA
WP_002303864.1|1557324_1557810_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002289415.1|1558265_1558679_+	Hsp20/alpha crystallin family protein	NA	A0A1B2LRT2	Wolbachia_phage	31.5	2.1e-07
WP_002322258.1|1558815_1559076_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033795113.1|1559193_1559472_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000997695.1|1559728_1560907_+|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_000222572.1|1561062_1562016_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002288357.1|1562072_1563200_+|integrase	site-specific integrase	integrase	A0A2I7SCV1	Paenibacillus_phage	55.5	1.8e-109
WP_002288355.1|1563293_1565129_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.4	3.4e-20
WP_002288353.1|1565275_1566496_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002288352.1|1566515_1567010_+	nucleoside deoxyribosyltransferase	NA	A0A1W6JK28	Lactococcus_phage	56.5	7.2e-42
WP_002288350.1|1567002_1567674_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288348.1|1567824_1570434_-	ATP-dependent chaperone ClpB	NA	A0A2I7SAX5	Vibrio_phage	35.0	1.6e-132
WP_002288347.1|1570684_1571731_-	flippase-like domain-containing protein	NA	NA	NA	NA	NA
WP_002288344.1|1571741_1572014_-	DUF1294 domain-containing protein	NA	NA	NA	NA	NA
WP_002288343.1|1572048_1572957_-	YegS/Rv2252/BmrU family lipid kinase	NA	NA	NA	NA	NA
WP_002288340.1|1573088_1574321_-	peptidase T	NA	NA	NA	NA	NA
WP_002288338.1|1574335_1575457_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_002288335.1|1575453_1576155_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_002288333.1|1576298_1576739_-	lipoprotein	NA	NA	NA	NA	NA
1576264:1576281	attR	ACAACATTTTCTTATTTT	NA	NA	NA	NA
WP_002288331.1|1576867_1577794_-	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	41.3	5.1e-33
WP_002288329.1|1577793_1579167_-	Replication initiation and membrane attachment	NA	NA	NA	NA	NA
WP_002288327.1|1579189_1579681_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_002288325.1|1579992_1580325_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002288324.1|1580376_1581006_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_002288323.1|1580969_1581806_-	DNA-formamidopyrimidine glycosylase	NA	A0A127AWE5	Bacillus_phage	30.2	1.8e-24
WP_002296395.1|1581850_1584496_-	DNA polymerase I	NA	F8WQ35	Bacillus_phage	35.7	3.0e-54
WP_002296397.1|1584621_1585305_-	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA	NA
WP_002296398.1|1585297_1585783_-	dehydratase	NA	NA	NA	NA	NA
WP_002296400.1|1586089_1587424_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
WP_002296401.1|1587554_1588316_-	YdcF family protein	NA	NA	NA	NA	NA
WP_002296402.1|1588331_1588814_-	SprT family protein	NA	NA	NA	NA	NA
WP_079504084.1|1588833_1591014_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_002296404.1|1591157_1591889_-	serine/threonine protein phosphatase	NA	A7KV25	Bacillus_phage	30.8	1.7e-15
WP_002296405.1|1591957_1592899_-	rhodanese-related sulfurtransferase	NA	NA	NA	NA	NA
WP_002296407.1|1593078_1593447_-	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_002295194.1|1594057_1595449_-	L-cystine transporter	NA	NA	NA	NA	NA
WP_002291995.1|1595661_1596048_-	DUF1149 family protein	NA	NA	NA	NA	NA
WP_002295196.1|1596103_1596727_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_002295197.1|1596790_1597459_-	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA	NA
WP_002322028.1|1597470_1597911_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079504085.1|1597969_1598434_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044382644.1|1598454_1599363_-|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP027512	Enterococcus faecium strain AUSMDU00004028 chromosome, complete genome	2855729	1624437	1830725	2855729	tRNA,protease,transposase	Streptococcus_phage(15.38%)	178	NA	NA
WP_002297185.1|1624437_1625733_+|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
WP_002295229.1|1625875_1626004_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_002288467.1|1626006_1627380_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	D0R096	Streptococcus_phage	55.9	7.1e-140
WP_002288471.1|1627490_1628546_-	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	27.4	3.2e-15
WP_002288473.1|1628555_1629986_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_002317639.1|1629982_1631455_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_002288477.1|1631454_1631760_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_002323115.1|1631865_1633902_-	NAD-dependent DNA ligase LigA	NA	A0A289ZTZ3	Serratia_phage	37.1	4.8e-100
WP_002319708.1|1633918_1636153_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	40.1	9.5e-126
WP_002317636.1|1636307_1637867_+	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA	NA
WP_002323114.1|1637977_1639909_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_002288484.1|1639926_1640841_-	1-phosphofructokinase	NA	NA	NA	NA	NA
WP_002323503.1|1640837_1641590_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_002294422.1|1641748_1641958_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002288487.1|1641968_1643297_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002288491.1|1643661_1644249_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_002294425.1|1644331_1645582_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	62.5	5.5e-147
WP_002292069.1|1645828_1647118_-	trigger factor	NA	NA	NA	NA	NA
WP_106913770.1|1647285_1648203_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002323141.1|1648359_1649019_-	RDD family protein	NA	NA	NA	NA	NA
WP_002323142.1|1649021_1650047_-	signal peptide peptidase SppA	NA	A0A2I6UH21	Salinibacter_virus	28.8	5.5e-20
WP_002323143.1|1650059_1650350_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002323144.1|1650759_1652565_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	38.8	7.5e-97
WP_002287824.1|1652636_1653992_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_002287822.1|1654015_1655185_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002287821.1|1655181_1656069_-	TIGR00159 family protein	NA	NA	NA	NA	NA
WP_060804945.1|1656257_1659938_-	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA	NA
WP_002323146.1|1660135_1660657_+	DsbA family protein	NA	NA	NA	NA	NA
WP_002299629.1|1662099_1662756_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289698.1|1663323_1664259_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.1	2.0e-53
WP_002306471.1|1664292_1665291_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	62.9	4.4e-115
WP_002289695.1|1665287_1666172_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	31.4	5.4e-08
WP_002294440.1|1666306_1667038_-	aspartate racemase	NA	NA	NA	NA	NA
WP_002294441.1|1667041_1668307_-	D-aspartate ligase	NA	NA	NA	NA	NA
WP_002322807.1|1668569_1671386_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.5	1.0e-311
WP_049143617.1|1671395_1673390_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_002296521.1|1673648_1675151_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_002292113.1|1675152_1675890_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	44.7	2.8e-34
WP_002289374.1|1676257_1677424_-	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	25.7	1.9e-24
WP_002292134.1|1677574_1679404_-	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	48.8	2.2e-136
WP_002296525.1|1679454_1680018_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_002294449.1|1680111_1681155_-	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_002300945.1|1681389_1682556_-	oxygen-independent coproporphyrinogen III oxidase	NA	A0A0N7G7K6	Chrysochromulina_ericina_virus	33.6	5.0e-09
WP_002300943.1|1682571_1682799_-	adenosine deaminase	NA	NA	NA	NA	NA
WP_000997695.1|1685263_1686442_-|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_002294462.1|1687988_1688579_+	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_101699735.1|1688826_1689989_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	50.9	7.8e-79
WP_002325767.1|1690138_1690852_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002294465.1|1690966_1691977_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_002294466.1|1692013_1692496_-|tRNA	prolyl-tRNA editing protein	tRNA	NA	NA	NA	NA
WP_002294467.1|1692645_1693014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002294470.1|1693478_1693931_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002288523.1|1694054_1694906_-	sugar transporter	NA	NA	NA	NA	NA
WP_002294471.1|1694918_1695704_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_002294472.1|1696098_1697040_-	riboflavin biosynthesis protein RibF	NA	NA	NA	NA	NA
WP_002294474.1|1697043_1697967_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_002347402.1|1698394_1699348_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002294145.1|1699403_1701767_-	phosphoketolase family protein	NA	NA	NA	NA	NA
WP_002296840.1|1702083_1703271_+|transposase	IS256-like element IS16 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	46.3	8.2e-92
WP_002294143.1|1703688_1703910_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002297185.1|1704113_1705409_+|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
WP_002294142.1|1705539_1705887_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_002294141.1|1705913_1708220_-	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	23.7	3.6e-19
WP_002288509.1|1708232_1708544_-	YlxQ-related RNA-binding protein	NA	NA	NA	NA	NA
WP_002288501.1|1708540_1708834_-	YlxR family protein	NA	NA	NA	NA	NA
WP_002288500.1|1708855_1710031_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_002288499.1|1710054_1710528_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_002294138.1|1710671_1715024_-	PolC-type DNA polymerase III	NA	A0A0K2SUJ2	Clostridium_phage	41.4	3.9e-22
WP_002347409.1|1715235_1716945_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_106913771.1|1717012_1718281_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_002294135.1|1718441_1719242_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_002294134.1|1719238_1720051_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	46.8	2.0e-25
WP_002293875.1|1720245_1720803_-	ribosome recycling factor	NA	NA	NA	NA	NA
WP_079504088.1|1720805_1721528_-	UMP kinase	NA	NA	NA	NA	NA
WP_002293878.1|1721663_1722545_-	elongation factor Ts	NA	NA	NA	NA	NA
WP_002293880.1|1722643_1723426_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_002293881.1|1723784_1724264_+	ArgR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002326249.1|1724480_1725572_+	2-aminoethylphosphonate--pyruvate transaminase	NA	NA	NA	NA	NA
WP_002293884.1|1725564_1726350_+	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_002293885.1|1726695_1728387_-|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	32.8	9.9e-75
WP_002288434.1|1728808_1729756_-	carbamate kinase	NA	NA	NA	NA	NA
WP_002288437.1|1729870_1730890_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_002288439.1|1730980_1732210_-	arginine deiminase	NA	NA	NA	NA	NA
WP_002288442.1|1732669_1733371_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_002293887.1|1733942_1734959_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	41.4	5.4e-60
WP_002293888.1|1734955_1735420_-	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_002293890.1|1735426_1735969_-	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_002302614.1|1735952_1736777_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_002297185.1|1736939_1738235_+|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
WP_002293893.1|1738387_1739368_-	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	28.9	5.8e-19
WP_002293895.1|1739391_1740876_-	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_002293897.1|1740887_1741877_-	UDP-glucose 4-epimerase GalE	NA	A0A1V0SG19	Hokovirus	36.8	1.6e-48
WP_002288457.1|1742123_1742291_+	DUF3042 family protein	NA	NA	NA	NA	NA
WP_002288458.1|1742352_1744164_-	FAD/NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_002288459.1|1744160_1744526_-	DUF488 family protein	NA	NA	NA	NA	NA
WP_002288461.1|1744688_1745084_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_002288462.1|1745101_1746064_-	ROK family glucokinase	NA	NA	NA	NA	NA
WP_002293902.1|1746063_1746276_-	YqgQ family protein	NA	NA	NA	NA	NA
WP_002289885.1|1746296_1746995_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_002289886.1|1747014_1747557_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_002301321.1|1747688_1748693_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_002293904.1|1748689_1749679_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_002293905.1|1749675_1750482_-	ABC transporter ATP-binding protein	NA	A0A1V0SJ29	Klosneuvirus	32.1	1.0e-13
WP_002293906.1|1750647_1751604_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002296121.1|1751680_1752199_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	39.1	7.1e-24
WP_002296119.1|1752286_1752436_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_002288531.1|1752663_1753110_+	DUF2188 domain-containing protein	NA	NA	NA	NA	NA
WP_002288533.1|1753304_1755200_-	asparagine synthase (glutamine-hydrolyzing)	NA	F2Y2L7	Organic_Lake_phycodnavirus	26.2	6.0e-20
WP_002303934.1|1755524_1756499_-	choloylglycine hydrolase family protein	NA	M1H001	Paramecium_bursaria_Chlorella_virus	29.7	3.0e-23
WP_002296332.1|1757064_1757631_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002296334.1|1757885_1759217_+	DUF1576 domain-containing protein	NA	NA	NA	NA	NA
WP_002296335.1|1759182_1759533_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002297629.1|1759624_1760044_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_002296337.1|1760044_1760389_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_002301399.1|1760654_1761614_+|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
WP_002287776.1|1761803_1762400_+	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	41.7	8.7e-34
WP_002287775.1|1762523_1764323_+	glycerophosphoryl diester phosphodiesterase	NA	I6XE30	Staphylococcus_phage	26.5	5.3e-10
WP_002297633.1|1764600_1764813_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002311774.1|1765676_1766636_-|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	27.2	7.5e-11
WP_002326704.1|1766848_1767757_+|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_002288573.1|1767805_1768192_+	YxeA family protein	NA	NA	NA	NA	NA
WP_002288574.1|1768499_1769846_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_002288575.1|1769957_1771307_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_002288576.1|1771423_1772677_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	55.3	7.7e-24
WP_002288577.1|1772747_1773233_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_002288579.1|1773255_1774014_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	36.4	1.9e-25
WP_002288581.1|1774029_1775208_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	48.9	3.9e-102
WP_002303943.1|1775437_1777558_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	58.0	8.2e-220
WP_002296838.1|1777780_1778506_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288586.1|1778495_1779005_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288588.1|1779074_1780523_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.3	1.7e-19
WP_002288590.1|1780522_1781239_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.7	1.0e-33
WP_002288595.1|1781219_1781570_-	SdpI family protein	NA	NA	NA	NA	NA
WP_002288592.1|1781713_1782487_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_002302293.1|1783243_1783546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002321266.1|1785342_1785582_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002289617.1|1785943_1786204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289618.1|1786388_1786886_-	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_002289619.1|1787015_1787726_-	acetolactate decarboxylase	NA	NA	NA	NA	NA
WP_002289620.1|1787738_1789403_-	acetolactate synthase AlsS	NA	NA	NA	NA	NA
WP_002300930.1|1789607_1790270_-	DUF624 domain-containing protein	NA	NA	NA	NA	NA
WP_002303949.1|1790279_1791095_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_002288989.1|1791356_1791800_-	LysR family transcriptional regulator substrate-binding protein	NA	NA	NA	NA	NA
WP_002321036.1|1791933_1792272_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002302962.1|1792259_1792637_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002322902.1|1792860_1794054_+	MFS transporter	NA	NA	NA	NA	NA
WP_002288984.1|1794219_1794642_-	HTH domain-containing protein	NA	NA	NA	NA	NA
WP_002303955.1|1795231_1795687_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288982.1|1795848_1797021_-	class C sortase	NA	NA	NA	NA	NA
WP_002303963.1|1800151_1802479_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_002296840.1|1802738_1803926_-|transposase	IS256-like element IS16 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	46.3	8.2e-92
WP_002288970.1|1804794_1805088_-	DUF2087 domain-containing protein	NA	NA	NA	NA	NA
WP_002286913.1|1805345_1805693_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_002293717.1|1805828_1806590_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_002293716.1|1806579_1807101_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_002297190.1|1807270_1808062_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002290277.1|1808186_1808438_-	KH domain-containing protein	NA	NA	NA	NA	NA
WP_002290274.1|1808449_1808725_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_002293714.1|1808977_1809532_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	29.3	2.3e-12
WP_002297192.1|1809610_1810132_-	dihydrofolate reductase	NA	NA	NA	NA	NA
WP_002293710.1|1810135_1810714_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_002293709.1|1810825_1812244_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_002293708.1|1812264_1812603_-	putative DNA-binding protein	NA	NA	NA	NA	NA
WP_002297194.1|1812562_1813066_-	DUF523 domain-containing protein	NA	NA	NA	NA	NA
WP_002293705.1|1813196_1813901_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.2	1.4e-38
WP_002297195.1|1813897_1815634_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	34.1	1.2e-27
WP_002305697.1|1815736_1818208_-	cation-translocating P-type ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	29.2	3.1e-45
WP_002289807.1|1818532_1819423_-	phosphate ABC transporter substrate-binding protein PstS family protein	NA	NA	NA	NA	NA
WP_002305696.1|1819619_1820102_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289810.1|1820309_1820675_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002322761.1|1820877_1821195_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296840.1|1821586_1822774_-|transposase	IS256-like element IS16 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	46.3	8.2e-92
WP_002287105.1|1823398_1824373_-	choloylglycine hydrolase family protein	NA	M1HVK5	Paramecium_bursaria_Chlorella_virus	31.8	5.4e-25
WP_002287107.1|1824782_1826033_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
WP_008266934.1|1826806_1827220_-	DUF4231 domain-containing protein	NA	NA	NA	NA	NA
WP_086953915.1|1827498_1828838_-|transposase	IS3-like element ISEnfa3 family transposase	transposase	A0A1B1P773	Bacillus_phage	52.7	2.6e-78
WP_042959742.1|1828907_1829483_-	hypothetical protein	NA	Q9MCC6	Lactobacillus_phage	35.9	4.8e-13
WP_094932120.1|1829563_1830725_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	2.7e-79
>prophage 10
NZ_CP027512	Enterococcus faecium strain AUSMDU00004028 chromosome, complete genome	2855729	1857487	1923053	2855729	tRNA,transposase	Streptococcus_phage(26.67%)	55	NA	NA
WP_002297185.1|1857487_1858783_+|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
WP_002288760.1|1859234_1860353_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002304680.1|1860823_1862131_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA	NA
WP_002340453.1|1862249_1863449_+	YdcF family protein	NA	NA	NA	NA	NA
WP_002289547.1|1863475_1864744_-	voltage-gated chloride channel family protein	NA	A0A1X9I5Z9	Streptococcus_phage	31.1	2.2e-42
WP_002291751.1|1865960_1866464_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_059355914.1|1866586_1867351_-	RNA methyltransferase	NA	A0A2D1A6G0	Rhodococcus_phage	26.1	1.7e-05
WP_002289551.1|1867458_1867734_+	acylphosphatase	NA	NA	NA	NA	NA
WP_002312285.1|1868171_1869122_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_002312284.1|1869300_1869501_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010782560.1|1870305_1871265_+|transposase	IS30-like element IS6770 family transposase	transposase	NA	NA	NA	NA
WP_002312282.1|1872130_1872661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002312281.1|1872657_1873275_-	VanZ family protein	NA	NA	NA	NA	NA
WP_002312280.1|1873856_1874078_-	transferase	NA	NA	NA	NA	NA
WP_002348669.1|1874255_1875788_-	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_002312276.1|1875923_1877009_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_002312275.1|1877023_1877743_-	glycosyl transferase	NA	A0A2K9L639	Tupanvirus	25.0	2.6e-08
WP_002312274.1|1877739_1879050_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002348666.1|1879076_1879667_-	poly-gamma-glutamate biosynthesis protein	NA	NA	NA	NA	NA
WP_002312270.1|1879984_1881046_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	36.5	1.5e-12
WP_002312264.1|1881613_1882681_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_002291721.1|1882700_1883180_-	EpsH	NA	NA	NA	NA	NA
WP_002325817.1|1883196_1883658_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002312259.1|1883671_1884922_-	nucleotide sugar dehydrogenase	NA	M1IB49	Acanthocystis_turfacea_Chlorella_virus	50.4	8.9e-105
WP_002312258.1|1885299_1886751_-	sugar transferase	NA	NA	NA	NA	NA
WP_002297185.1|1886897_1888193_+|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
WP_002312256.1|1888593_1889358_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002348664.1|1889385_1890084_-	CpsD/CapB family tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	37.1	6.0e-26
WP_002348663.1|1890095_1890875_-	tyrosine protein kinase	NA	NA	NA	NA	NA
WP_002296209.1|1890890_1891835_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_002348662.1|1891880_1892660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002348661.1|1893039_1895115_-|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_002305598.1|1895116_1896034_-|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_002348660.1|1896419_1897238_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_002288753.1|1897380_1898280_-	GTPase Era	NA	NA	NA	NA	NA
WP_010782558.1|1898294_1898696_-	diacylglycerol kinase family protein	NA	NA	NA	NA	NA
WP_002291700.1|1898673_1899150_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_079504092.1|1899178_1901371_-	HDIG domain-containing protein	NA	NA	NA	NA	NA
WP_002291698.1|1901394_1902366_-	PhoH family protein	NA	W8D063	Erwinia_phage	49.8	3.5e-48
WP_002288744.1|1903070_1904450_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
WP_002326809.1|1904633_1905929_+|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	5.0e-10
WP_002287318.1|1907635_1908082_-	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	39.5	5.3e-20
WP_002287321.1|1908108_1908285_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_002287322.1|1908446_1908875_-	transcriptional repressor	NA	NA	NA	NA	NA
WP_002304612.1|1908966_1909827_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_002296154.1|1909918_1910212_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002299465.1|1910283_1912011_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	63.7	1.5e-211
WP_002296150.1|1912224_1913151_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	52.4	5.0e-89
WP_002304608.1|1913295_1914729_-	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
WP_002289176.1|1914728_1916132_-	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
WP_002299460.1|1916362_1917265_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002330765.1|1917304_1919185_-	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_002299454.1|1919281_1920133_-	PRD domain-containing protein	NA	NA	NA	NA	NA
WP_002287525.1|1921483_1922632_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
WP_002287522.1|1922648_1923053_-|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
>prophage 11
NZ_CP027512	Enterococcus faecium strain AUSMDU00004028 chromosome, complete genome	2855729	2043661	2101401	2855729	tRNA,plate,transposase,holin,tail	Lactococcus_phage(25.0%)	60	NA	NA
WP_000202380.1|2043661_2044981_+|transposase	IS1380-like element IS1678 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	82.7	4.8e-210
WP_002302982.1|2045421_2047062_+	NAD-dependent malic enzyme	NA	NA	NA	NA	NA
WP_002302984.1|2047215_2048538_+	2-hydroxycarboxylate transporter family protein	NA	NA	NA	NA	NA
WP_002295053.1|2048599_2049031_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002302985.1|2049094_2049931_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_002295049.1|2050120_2050423_-	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_002290886.1|2050448_2050880_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_002290885.1|2050876_2051143_-	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_002290883.1|2051396_2052122_-	DNA/RNA non-specific endonuclease	NA	NA	NA	NA	NA
WP_002289867.1|2052674_2053427_+	threonine/serine exporter family protein	NA	NA	NA	NA	NA
WP_002289868.1|2053442_2053922_+	threonine/serine exporter	NA	NA	NA	NA	NA
WP_002296509.1|2054172_2055753_-	ABC transporter	NA	NA	NA	NA	NA
WP_002287741.1|2055745_2056489_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.9	3.6e-29
WP_002287742.1|2056664_2057441_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_002287743.1|2057688_2058525_-	TIGR03943 family protein	NA	NA	NA	NA	NA
WP_002287744.1|2058535_2059465_-	permease	NA	NA	NA	NA	NA
WP_002287745.1|2059656_2060010_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_002287746.1|2060083_2060740_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_002287747.1|2060965_2062900_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	31.9	1.1e-58
WP_002321414.1|2062985_2064209_-	glucuronyl hydrolase	NA	NA	NA	NA	NA
WP_002321415.1|2064202_2066101_-	DUF2264 domain-containing protein	NA	NA	NA	NA	NA
WP_002287753.1|2066094_2067213_-	glycosyl hydrolase family 88	NA	NA	NA	NA	NA
WP_002302991.1|2067295_2068129_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_002287755.1|2068121_2069039_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_002287756.1|2069061_2069241_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002287757.1|2069265_2070390_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_002296511.1|2070572_2071481_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002287759.1|2071621_2073235_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000222572.1|2073885_2074839_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002289406.1|2074872_2076102_-	GTPase HflX	NA	NA	NA	NA	NA
WP_002289405.1|2076103_2077021_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_002289404.1|2077024_2077762_-	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	40.0	2.3e-12
WP_002289403.1|2077852_2078380_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289402.1|2078559_2079153_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.6	8.9e-55
WP_002289401.1|2079256_2079742_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA	NA
WP_002296291.1|2079894_2080092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289400.1|2080186_2081947_-	multidrug efflux ABC transporter subunit EfrB	NA	W8CYL7	Bacillus_phage	28.6	2.5e-52
WP_002296290.1|2081943_2083674_-	multidrug efflux ABC transporter subunit EfrA	NA	W8CYL7	Bacillus_phage	27.6	2.1e-43
WP_002287947.1|2084066_2084279_+	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA	NA
WP_002287948.1|2084280_2085960_+	ribonuclease J	NA	NA	NA	NA	NA
WP_002294067.1|2086213_2086414_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	71.2	3.7e-21
WP_002347086.1|2087489_2087888_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002305550.1|2087880_2088333_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106913772.1|2088319_2088727_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002305364.1|2088705_2089008_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286473.1|2089042_2089414_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296902.1|2089415_2089817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286474.1|2089830_2090238_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087046766.1|2091160_2092323_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.2	4.1e-80
WP_002303477.1|2093262_2094282_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	66.1	2.4e-60
WP_002286683.1|2094278_2094503_-|holin	holin	holin	NA	NA	NA	NA
WP_002303476.1|2094499_2094793_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303475.1|2094829_2094967_-	XkdX family protein	NA	NA	NA	NA	NA
WP_002347165.1|2094968_2095400_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002347378.1|2095413_2095908_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002319918.1|2095907_2096357_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303306.1|2096360_2096981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002347082.1|2096980_2097889_-|plate	phage baseplate upper protein	plate	A0A1P8BLW0	Lactococcus_phage	25.2	7.8e-10
WP_002347081.1|2097901_2100664_-	CHAP domain-containing protein	NA	Q9AZX5	Lactococcus_phage	39.1	6.0e-138
WP_002303299.1|2100660_2101401_-|tail	tail protein	tail	NA	NA	NA	NA
>prophage 12
NZ_CP027512	Enterococcus faecium strain AUSMDU00004028 chromosome, complete genome	2855729	2104762	2158836	2855729	tRNA,head,terminase,portal,transposase,tail	Enterococcus_phage(28.57%)	52	NA	NA
WP_002303295.1|2104762_2105371_-|tail	tail protein	tail	NA	NA	NA	NA
WP_002298045.1|2105371_2105749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002298046.1|2105750_2106146_-	HK97 gp10 family phage protein	NA	NA	NA	NA	NA
WP_002298048.1|2106138_2106510_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002298050.1|2106509_2106851_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002311614.1|2106862_2107078_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303293.1|2107100_2107991_-	DUF5309 domain-containing protein	NA	NA	NA	NA	NA
WP_002349163.1|2108005_2108707_-	DUF4355 domain-containing protein	NA	NA	NA	NA	NA
WP_002298058.1|2108755_2109073_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002298060.1|2109074_2109953_-|head	phage head morphogenesis protein	head	NA	NA	NA	NA
WP_002303292.1|2110044_2111574_-|portal	phage portal protein	portal	A0A0S2MVB2	Bacillus_phage	25.0	1.3e-28
WP_002298064.1|2111585_2113001_-	hypothetical protein	NA	C9E2I7	Enterococcus_phage	79.7	1.0e-218
WP_002303291.1|2112993_2113827_-|terminase	small subunit of terminase	terminase	D2IYW0	Enterococcus_phage	68.8	1.5e-79
WP_002303289.1|2114431_2114692_-	hypothetical protein	NA	A0A0S2MYE7	Enterococcus_phage	51.1	7.9e-16
WP_002305391.1|2115677_2116145_-	ArpU family transcriptional regulator	NA	D7RWH7	Brochothrix_phage	28.5	2.4e-07
WP_002305847.1|2116340_2116523_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002317474.1|2116515_2116833_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002299339.1|2116829_2117681_-	ATP-binding protein	NA	A0A0P0I3L9	Lactobacillus_phage	30.2	2.3e-27
WP_002303278.1|2117695_2118496_-	hypothetical protein	NA	B4XYS6	Lactobacillus_phage	54.5	8.9e-58
WP_002303277.1|2118538_2119429_-	hypothetical protein	NA	D2IYT9	Enterococcus_phage	84.5	6.2e-137
WP_002303275.1|2119430_2120372_-	endonuclease	NA	D2IZK1	Enterococcus_phage	78.9	2.7e-146
WP_002303273.1|2120604_2120940_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002304466.1|2121191_2121431_+	DUF2188 domain-containing protein	NA	E8ZD70	Streptococcus_phage	81.1	1.8e-27
WP_002299038.1|2121739_2121895_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002304464.1|2121966_2122197_+	DUF2188 domain-containing protein	NA	E8ZD70	Streptococcus_phage	49.3	4.4e-10
WP_002303266.1|2122364_2122631_-	helix-turn-helix transcriptional regulator	NA	A0A1W6JP54	Staphylococcus_phage	52.7	5.4e-12
WP_002303265.1|2122830_2123535_+	LexA family transcriptional regulator	NA	D7RWF2	Brochothrix_phage	42.4	6.2e-39
WP_002303264.1|2123621_2124911_+	DUF4041 domain-containing protein	NA	M1NRY5	Streptococcus_phage	74.0	5.6e-46
WP_002303263.1|2124976_2126329_+	recombinase family protein	NA	D2IZV7	Enterococcus_phage	55.3	1.7e-133
WP_002304462.1|2126223_2126895_-	DNA repair protein RadC	NA	NA	NA	NA	NA
WP_002287951.1|2126949_2127603_-	HAD family phosphatase	NA	NA	NA	NA	NA
WP_002294071.1|2127592_2128906_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_002287953.1|2129215_2131861_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	42.9	4.0e-163
WP_002287954.1|2132253_2132901_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_002287955.1|2133473_2134685_-|tRNA	tRNA 4-thiouridine(8) synthase ThiI	tRNA	NA	NA	NA	NA
WP_002287956.1|2134700_2135843_-	cysteine desulfurase	NA	NA	NA	NA	NA
WP_002287957.1|2136007_2137729_-	septation ring formation regulator EzrA	NA	NA	NA	NA	NA
WP_002287958.1|2137927_2138488_-	haloacid dehalogenase	NA	A0A0H3UZF4	Geobacillus_virus	45.1	2.3e-28
WP_002287959.1|2138513_2139353_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_002287960.1|2139386_2140220_-	DUF72 domain-containing protein	NA	NA	NA	NA	NA
WP_002332578.1|2140451_2141420_+	asparaginase	NA	NA	NA	NA	NA
WP_002287962.1|2141574_2142312_-	acyl-ACP thioesterase	NA	NA	NA	NA	NA
WP_002287963.1|2142327_2143161_-	phosphotransferase	NA	NA	NA	NA	NA
WP_002294080.1|2143362_2144691_-	aminopeptidase C	NA	R4TV59	Phaeocystis_globosa_virus	38.1	7.3e-73
WP_002287965.1|2145780_2146410_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_002287966.1|2146523_2146898_-	iron-sulfur cluster biosynthesis family protein	NA	NA	NA	NA	NA
WP_106913773.1|2147106_2148268_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.7	5.9e-79
WP_002287172.1|2154442_2154805_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002287231.1|2154878_2155259_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_002296072.1|2155340_2156516_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_002287167.1|2156592_2157177_-	peptidylprolyl isomerase	NA	A0A1V0S9I2	Catovirus	43.4	2.0e-27
WP_002287107.1|2157585_2158836_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
>prophage 13
NZ_CP027512	Enterococcus faecium strain AUSMDU00004028 chromosome, complete genome	2855729	2343888	2397629	2855729	bacteriocin,transposase	Enterococcus_phage(23.08%)	54	NA	NA
WP_000195429.1|2343888_2345061_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_049142660.1|2345368_2345857_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_099097712.1|2346260_2346566_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049142659.1|2346747_2347179_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049142658.1|2347193_2347490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049142657.1|2347566_2347986_-	single-stranded DNA-binding protein	NA	Q9AZV6	Lactococcus_phage	56.7	1.7e-36
WP_049142656.1|2348040_2348382_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049142678.1|2348453_2348720_-	hypothetical protein	NA	A0A1W6JN36	Lactococcus_phage	58.2	1.3e-18
WP_049142655.1|2349206_2350118_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049142654.1|2351059_2351482_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_053089540.1|2351471_2353646_-	DUF853 family protein	NA	NA	NA	NA	NA
WP_049142653.1|2353661_2356004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049142652.1|2356025_2358569_-	type VI secretion protein	NA	NA	NA	NA	NA
WP_049142651.1|2358578_2358977_-	hypothetical protein	NA	NA	NA	NA	NA
WP_053089539.1|2359057_2359342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049142649.1|2359365_2360364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086953915.1|2360502_2361841_+|transposase	IS3-like element ISEnfa3 family transposase	transposase	A0A1B1P773	Bacillus_phage	52.7	2.6e-78
WP_049142647.1|2362138_2362789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049142646.1|2362799_2363972_-	CHAP domain-containing protein	NA	Q4Z9E1	Staphylococcus_phage	44.7	1.8e-19
WP_049142645.1|2363990_2364863_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_049142644.1|2364884_2365805_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049142643.1|2365804_2366074_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049142642.1|2366070_2366451_-	DUF805 domain-containing protein	NA	NA	NA	NA	NA
WP_049142641.1|2366917_2368381_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A075BS18	Microcystis_phage	46.7	3.0e-19
WP_049142640.1|2368444_2371462_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_049142639.1|2371612_2372452_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_049142638.1|2372596_2372842_+	hypothetical protein	NA	NA	NA	NA	NA
WP_049142637.1|2372904_2373327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_049142636.1|2373420_2373738_-	hypothetical protein	NA	A0A0S2MYE8	Enterococcus_phage	45.7	4.5e-13
WP_049142635.1|2373764_2373971_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049142634.1|2373951_2374134_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049142633.1|2374147_2374498_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049142632.1|2374523_2374826_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049142631.1|2374828_2375062_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049142629.1|2376492_2377608_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049142628.1|2377613_2378012_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000222572.1|2378721_2379675_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002321654.1|2379671_2379818_-|bacteriocin	EntF family bacteriocin induction factor	bacteriocin	NA	NA	NA	NA
WP_002287810.1|2379921_2380233_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_002304799.1|2380234_2380432_-	enterocin	NA	NA	NA	NA	NA
WP_002287807.1|2380825_2382553_-	ABC transporter permease/substrate binding protein	NA	NA	NA	NA	NA
WP_002287805.1|2382545_2383739_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.0	1.2e-29
WP_002287801.1|2383925_2384570_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002290587.1|2384663_2384798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002287799.1|2384799_2386932_-	ferrous iron transport protein B	NA	NA	NA	NA	NA
WP_002287797.1|2386928_2387402_-	ferrous iron transport protein A	NA	NA	NA	NA	NA
WP_002287795.1|2387802_2388027_+	glutaredoxin-like protein NrdH	NA	A0A0M7REK7	Lactobacillus_phage	42.7	1.7e-11
WP_002287793.1|2388185_2390345_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	63.2	3.8e-265
WP_002287792.1|2390394_2391360_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	70.4	3.4e-128
WP_002287791.1|2391448_2392588_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_002287788.1|2392896_2393610_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	43.7	6.5e-20
WP_002287787.1|2393863_2394565_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
WP_002290558.1|2394798_2396331_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	28.0	3.3e-45
WP_002295743.1|2396720_2397629_-|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP027512	Enterococcus faecium strain AUSMDU00004028 chromosome, complete genome	2855729	2547708	2578799	2855729	tRNA,holin,transposase	Bacillus_phage(25.0%)	23	NA	NA
WP_002285932.1|2547708_2547888_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_104674935.1|2548081_2548252_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016252731.1|2548675_2549695_-	collagen binding domain-containing protein	NA	NA	NA	NA	NA
WP_002285924.1|2549841_2552913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303189.1|2554819_2555581_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002344993.1|2555680_2557402_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.0	1.3e-37
WP_002304835.1|2557416_2559201_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.2	2.1e-46
WP_002285917.1|2559581_2561135_-	glycosyl hydrolase	NA	NA	NA	NA	NA
WP_002285916.1|2561482_2563897_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	72.8	0.0e+00
WP_002301403.1|2564323_2566342_-	LysM peptidoglycan-binding domain-containing protein	NA	Q9ZXE4	Bacillus_phage	39.6	5.8e-13
WP_002285911.1|2566711_2567368_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_002285909.1|2567367_2568324_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	57.4	3.3e-43
WP_002285906.1|2568323_2568890_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	42.8	2.2e-34
WP_002299614.1|2569325_2569556_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296840.1|2569748_2570936_-|transposase	IS256-like element IS16 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	46.3	8.2e-92
WP_025479400.1|2571032_2571335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002297218.1|2571646_2572942_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002303477.1|2573631_2574651_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	66.1	2.4e-60
WP_002301818.1|2574661_2574868_-|holin	holin	holin	NA	NA	NA	NA
WP_002301399.1|2575000_2575960_-|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
WP_002304713.1|2576162_2577095_+	DUF4041 domain-containing protein	NA	M1NRY5	Streptococcus_phage	53.8	1.8e-57
WP_002341521.1|2577166_2577523_+	hypothetical protein	NA	U4KJ82	Streptococcus_phage	42.2	9.2e-15
WP_010729461.1|2577620_2578799_+|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP027512	Enterococcus faecium strain AUSMDU00004028 chromosome, complete genome	2855729	2722572	2732975	2855729		Streptococcus_phage(90.0%)	14	NA	NA
WP_002297366.1|2722572_2722887_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	53.4	1.0e-25
WP_002297365.1|2722899_2723274_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	66.1	2.4e-34
WP_002311649.1|2723274_2723619_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002321809.1|2723701_2725042_+	DUF87 domain-containing protein	NA	A0A1S5SFB5	Streptococcus_phage	65.4	2.4e-164
WP_002297358.1|2725119_2725794_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_002321810.1|2726026_2726461_+	DNA (cytosine-5-)-methyltransferase	NA	A0A1S5SDW2	Streptococcus_phage	77.1	6.5e-63
WP_002297356.1|2726461_2727169_+	DNA methylase	NA	A0A1S5SEK0	Streptococcus_phage	50.4	5.8e-53
WP_002297354.1|2727158_2727449_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002297353.1|2727707_2728892_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	61.6	2.9e-142
WP_002317225.1|2728888_2729026_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_002286940.1|2729771_2731682_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	29.8	7.1e-37
WP_033658092.1|2731785_2732010_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	83.8	1.2e-23
WP_002297350.1|2732022_2732526_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	59.9	9.2e-53
WP_002297349.1|2732585_2732975_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	68.3	3.9e-43
>prophage 1
NZ_CP027513	Enterococcus faecium strain AUSMDU00004028 plasmid unnamed1, complete sequence	184337	32330	123838	184337	bacteriocin,holin,transposase,integrase	Streptococcus_phage(24.24%)	87	58494:58518	130224:130248
WP_002287107.1|32330_33581_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
WP_002317424.1|33990_36363_+	hypothetical protein	NA	B5SP25	Lactococcus_phage	32.5	1.8e-13
WP_002313123.1|36423_37893_+	DUF3991 domain-containing protein	NA	NA	NA	NA	NA
WP_002303486.1|37903_39913_+	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	52.6	1.6e-111
WP_002299811.1|40258_40855_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_079504108.1|40867_41767_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_002301801.1|41769_41901_+	single-stranded DNA-binding protein	NA	A8ATZ7	Listeria_phage	83.3	1.3e-11
WP_002305808.1|41922_42255_+	single-stranded DNA-binding protein	NA	W6LM61	Streptococcus_phage	53.2	6.1e-21
WP_002295625.1|42276_42534_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002295624.1|42692_42815_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_002305809.1|43004_43229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305810.1|43671_43878_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002300797.1|43877_44129_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002300801.1|44309_44582_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002300804.1|45026_45206_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002311569.1|45264_45621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_106913780.1|46589_47543_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.8	4.8e-34
WP_002300807.1|47663_47927_+|bacteriocin	circular bacteriocin, circularin A/uberolysin family	bacteriocin	NA	NA	NA	NA
WP_079504104.1|48298_49477_+|transposase	IS256-like element ISEf1 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	25.3	1.5e-29
WP_002300833.1|49865_51812_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_002300835.1|51814_52270_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_002300836.1|52283_53612_+	PTS galactitol transporter subunit IIC	NA	NA	NA	NA	NA
WP_002300838.1|53645_53930_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002300840.1|53931_54447_+	YjbQ family protein	NA	NA	NA	NA	NA
WP_002300841.1|54462_55125_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_002300842.1|55131_55704_+	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_002300843.1|55890_57411_-|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	31.6	1.1e-48
WP_002305884.1|57653_57839_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_002300846.1|57822_58005_-	hypothetical protein	NA	NA	NA	NA	NA
58494:58518	attL	ACACAAAATTATTGACGCTCCCAAC	NA	NA	NA	NA
WP_002301839.1|58958_59558_+|integrase	tyrosine-type recombinase/integrase	integrase	D2XR58	Bacillus_phage	36.1	1.3e-29
WP_002322465.1|59621_60221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002292418.1|61236_62109_-	ROK family protein	NA	NA	NA	NA	NA
WP_002293868.1|62372_64319_-	PTS beta-glucoside transporter subunit IIBCA	NA	NA	NA	NA	NA
WP_002302078.1|64503_65943_+	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	25.1	1.4e-16
WP_002302077.1|65944_66907_+	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	25.8	2.3e-20
WP_002287522.1|67087_67492_+|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
WP_002287525.1|67508_68657_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
WP_086953894.1|68967_70394_-|transposase	IS3-like element ISEfa10 family transposase	transposase	A0A1B1P773	Bacillus_phage	40.2	2.3e-48
WP_002301718.1|70636_71092_+|transposase	IS200/IS605 family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.6	1.3e-13
WP_002289255.1|71676_71907_-	resolvase	NA	NA	NA	NA	NA
WP_002289254.1|72136_72955_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002289253.1|73115_73805_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
WP_002289252.1|73818_75321_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_002300328.1|75333_75810_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_158514107.1|75906_76017_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086956687.1|76307_77470_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
WP_002301811.1|79455_80748_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	41.0	6.1e-32
WP_002313174.1|81021_81282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002346943.1|81532_82711_+|transposase	IS256-like element ISEf1 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	25.3	4.0e-30
WP_073120200.1|83062_83359_+|transposase	IS3 family transposase	transposase	A0A0C5AEB1	Paenibacillus_phage	59.2	6.7e-19
WP_002287876.1|84307_84703_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_002287875.1|84712_85561_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_002287874.1|85575_86403_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	NA	NA	NA	NA
WP_002287872.1|86414_87260_-	Rossmann-like and DUF2520 domain-containing protein	NA	NA	NA	NA	NA
WP_002285758.1|87698_87893_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287659.1|87882_88236_+	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	38.7	5.7e-17
WP_002301317.1|88337_89885_+|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	28.9	1.7e-44
WP_002354485.1|91374_92061_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_000195429.1|92684_93857_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_002303110.1|95687_96725_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	28.5	7.1e-07
WP_002303111.1|96721_97234_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_002304894.1|97291_97558_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303113.1|98233_98785_-	DUF334 domain-containing protein	NA	NA	NA	NA	NA
WP_002319817.1|99329_100010_+|transposase	IS6-like element ISS1N family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	84.1	2.5e-109
WP_079504106.1|100269_100875_+	recombinase family protein	NA	A0A219YA40	Aeromonas_phage	33.2	2.1e-19
WP_000824191.1|100919_101087_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000366408.1|101120_101420_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001224538.1|101460_102078_-	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	33.1	5.1e-13
WP_002304891.1|102402_102798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002325565.1|103079_103760_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	1.3e-126
WP_002300494.1|103861_105181_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_002348630.1|106539_107256_-	aminotransferase class V-fold PLP-dependent enzyme	NA	Q2XUY6	environmental_halophage	50.0	4.5e-45
WP_002302256.1|107305_107515_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002302261.1|109171_110203_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.6	1.8e-26
WP_002313180.1|110209_111040_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002302265.1|111036_111843_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_002302267.1|111848_112673_-	type I phosphodiesterase/nucleotide pyrophosphatase	NA	NA	NA	NA	NA
WP_002302268.1|112662_113763_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_002302270.1|113940_114726_+	histidinol phosphate phosphatase	NA	NA	NA	NA	NA
WP_002330694.1|114758_115142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077828694.1|115217_115349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_079504105.1|115576_116548_-	radical SAM protein	NA	NA	NA	NA	NA
WP_002340465.1|117199_118822_+|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	47.5	2.7e-122
WP_002301195.1|119107_120484_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002298083.1|120483_121140_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.1	1.3e-22
WP_002301194.1|121149_122427_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_102829665.1|122676_123838_+|transposase	IS3-like element ISEfa8 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.2	1.8e-80
130224:130248	attR	GTTGGGAGCGTCAATAATTTTGTGT	NA	NA	NA	NA
>prophage 1
NZ_CP027516	Enterococcus faecium strain AUSMDU00004028 plasmid unnamed4, complete sequence	37152	1656	15773	37152	transposase	Streptococcus_phage(76.92%)	15	NA	NA
WP_002354485.1|1656_2343_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_001814874.1|2482_2566_+	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA	NA
WP_001038792.1|2690_3428_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.2	7.0e-134
WP_000085862.1|3432_3564_+	hypothetical protein	NA	E4ZFP9	Streptococcus_phage	100.0	7.9e-17
WP_000567888.1|4721_4967_+	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_000228166.1|5069_5939_+	hypothetical protein	NA	A0A1X9I6C9	Streptococcus_phage	95.8	4.3e-159
WP_000662263.1|5919_6654_+	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
WP_001255866.1|6686_7595_+	aminoglycoside nucleotidyltransferase ANT(6)-Ia	NA	E4ZFP8	Streptococcus_phage	100.0	2.8e-177
WP_000627290.1|7591_8134_+	streptothricin N-acetyltransferase Sat4	NA	A0A1B0RXL7	Streptococcus_phage	100.0	8.9e-94
WP_001096887.1|8226_9021_+	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_002354485.1|9868_10555_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_001280781.1|11255_11951_+	VanA-type vancomycin resistance DNA-binding response regulator VanR	NA	W8CYM9	Bacillus_phage	37.7	4.9e-36
WP_002305818.1|11928_13083_+	VanA-type vancomycin resistance histidine kinase VanS	NA	W8CYF6	Bacillus_phage	23.3	1.5e-13
WP_000122610.1|13180_14473_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	38.9	3.2e-57
WP_001059542.1|14804_15773_+	D-lactate dehydrogenase VanH-A	NA	M1HUW8	Acanthocystis_turfacea_Chlorella_virus	33.1	3.5e-40
