assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003025365.1_ASM302536v1	NZ_CP028148	Streptococcus pyogenes strain TJ11-001 chromosome, complete genome	1	1044887-1044988	1	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas8c,cas5,DEDDh,csa3	Orphan	AATAATTGGTATAGTCTAATTATA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas8c,cas5,DEDDh,csa3	NA,NA|262aa|down_6|NZ_CP028148.1_1052818_1053604_+	NA|83aa|up_9|NZ_CP028148.1_1032616_1032865_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|773aa|up_8|NZ_CP028148.1_1033228_1035547_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|441aa|up_7|NZ_CP028148.1_1036075_1037398_+	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|412aa|up_6|NZ_CP028148.1_1037517_1038753_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|258aa|up_5|NZ_CP028148.1_1039122_1039896_-	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|279aa|up_4|NZ_CP028148.1_1040265_1041102_-	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|210aa|up_3|NZ_CP028148.1_1041117_1041747_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|214aa|up_2|NZ_CP028148.1_1041756_1042398_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|112aa|up_1|NZ_CP028148.1_1042504_1042840_-	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|605aa|up_0|NZ_CP028148.1_1043021_1044836_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|186aa|down_0|NZ_CP028148.1_1045011_1045569_-	TIGR02227, Inactive_signal_peptidase_IA	NA|501aa|down_1|NZ_CP028148.1_1045786_1047289_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|338aa|down_2|NZ_CP028148.1_1047351_1048365_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|1037aa|down_3|NZ_CP028148.1_1048444_1051555_-	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|124aa|down_4|NZ_CP028148.1_1051739_1052111_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|233aa|down_5|NZ_CP028148.1_1052110_1052809_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|262aa|down_6|NZ_CP028148.1_1052818_1053604_+	NA	NA|205aa|down_7|NZ_CP028148.1_1053736_1054351_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|207aa|down_8|NZ_CP028148.1_1055091_1055712_+	pfam12978, DUF3862, Domain of Unknown Function with PDB structure (DUF3862)	NA|755aa|down_9|NZ_CP028148.1_1055968_1058233_-	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins
GCF_003025365.1_ASM302536v1	NZ_CP028148	Streptococcus pyogenes strain TJ11-001 chromosome, complete genome	2	1337478-1337775	1,1,2	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas4,cas8c,cas5,cas3	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas8c,cas5,DEDDh,csa3	Type I-U, Type I-U?,Type I-C	TATTTCAATCCACTCACCCATGAAGGGTGAGAC,ATTTCAATCCACTCACCCATGAAGGGTGAGAC,TTTCAATCCACTCACCCATGAAGGGTGAGAC	33,32,31	4	4	1337511-1337542|1337576-1337609|1337512-1337544|1337577-1337611	NZ_CP028148.1_8260-8229|NZ_CP028148.1_1264891-1264858|NZ_CP028148.1_8260-8228|NZ_CP028148.1_1264891-1264857	I-C:I-C:I-C	4,4,4	4	TypeI-U,TypeI-U?,TypeI-C	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas8c,cas5,DEDDh,csa3	NA,NA	NA|412aa|up_9|NZ_CP028148.1_1327404_1328640_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|227aa|up_8|NZ_CP028148.1_1328913_1329594_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|158aa|up_7|NZ_CP028148.1_1329735_1330209_+	COG1438, ArgR, Arginine repressor [Transcription]	NA|239aa|up_6|NZ_CP028148.1_1330374_1331091_-	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|360aa|up_5|NZ_CP028148.1_1331113_1332193_-	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|578aa|up_4|NZ_CP028148.1_1332265_1333999_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|247aa|up_3|NZ_CP028148.1_1333995_1334736_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|369aa|up_2|NZ_CP028148.1_1334823_1335930_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|208aa|up_1|NZ_CP028148.1_1335972_1336596_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|237aa|up_0|NZ_CP028148.1_1336608_1337319_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	cas2|98aa|down_0|NZ_CP028148.1_1337923_1338217_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|342aa|down_1|NZ_CP028148.1_1338227_1339253_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|225aa|down_2|NZ_CP028148.1_1339249_1339924_-	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas8c|632aa|down_3|NZ_CP028148.1_1340775_1342671_-	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas5|243aa|down_4|NZ_CP028148.1_1342670_1343399_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|803aa|down_5|NZ_CP028148.1_1343531_1345940_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|883aa|down_6|NZ_CP028148.1_1346093_1348742_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|188aa|down_7|NZ_CP028148.1_1348743_1349307_-	pfam13238, AAA_18, AAA domain	NA|67aa|down_8|NZ_CP028148.1_1349303_1349504_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|132aa|down_9|NZ_CP028148.1_1349907_1350303_-	PRK07758, PRK07758, hypothetical protein; Provisional
GCF_003025365.1_ASM302536v1	NZ_CP028148	Streptococcus pyogenes strain TJ11-001 chromosome, complete genome	3	1745324-1745911	2	CRT	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas8c,cas5,DEDDh,csa3	Orphan	NNANCTTTTTCACCTNGT	18	0	0	NA	NA	NA	10	10	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas8c,cas5,DEDDh,csa3	NA,NA|65aa|down_7|NZ_CP028148.1_1753658_1753853_+,NA|114aa|down_9|NZ_CP028148.1_1754961_1755303_-	NA|250aa|up_9|NZ_CP028148.1_1730750_1731500_-	PRK14830, PRK14830, undecaprenyl pyrophosphate synthase; Provisional	NA|122aa|up_8|NZ_CP028148.1_1731718_1732084_-	PRK06531, yajC, preprotein translocase subunit YajC; Validated	NA|125aa|up_7|NZ_CP028148.1_1732199_1732574_-	TIGR01295, Pediocin_PA-1_biosynthesis_protein_PedC, bacteriocin transport accessory protein, putative	NA|1166aa|up_6|NZ_CP028148.1_1732688_1736186_-	TIGR02102, alkaline_amylopullulanase, pullulanase, extracellular, Gram-positive	NA|538aa|up_5|NZ_CP028148.1_1736383_1737997_-	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins	NA|378aa|up_4|NZ_CP028148.1_1738125_1739259_-	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|283aa|up_3|NZ_CP028148.1_1739556_1740405_-	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|441aa|up_2|NZ_CP028148.1_1740745_1742068_+	pfam02821, Staphylokinase, Staphylokinase/Streptokinase family	NA|148aa|up_1|NZ_CP028148.1_1742165_1742609_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|740aa|up_0|NZ_CP028148.1_1742623_1744843_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|154aa|down_0|NZ_CP028148.1_1746717_1747179_+	PRK02551, PRK02551, flavoprotein NrdI; Provisional	NA|273aa|down_1|NZ_CP028148.1_1747573_1748392_-	cd09079, RgfB-like, Streptococcus agalactiae RgfB, part of a putative two component signal transduction system, and related proteins	NA|729aa|down_2|NZ_CP028148.1_1748474_1750661_-	TIGR02003, PTS_system_glucose-specific_IIBC_component, PTS system, IIBC component	NA|250aa|down_3|NZ_CP028148.1_1751017_1751767_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|318aa|down_4|NZ_CP028148.1_1751766_1752720_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|157aa|down_5|NZ_CP028148.1_1752790_1753261_-	pfam11217, DUF3013, Protein of unknown function (DUF3013)	NA|70aa|down_6|NZ_CP028148.1_1753325_1753535_-	pfam13310, Virulence_RhuM, Virulence protein RhuM family	NA|65aa|down_7|NZ_CP028148.1_1753658_1753853_+	NA	NA|288aa|down_8|NZ_CP028148.1_1753954_1754818_+	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|114aa|down_9|NZ_CP028148.1_1754961_1755303_-	NA
