assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003030165.1_ASM303016v1	NZ_CP028183	Listeria monocytogenes strain CFSAN054109 chromosome, complete genome	1	505680-506264	1	CRT	no	WYL	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	Unclear	GATGTAAGTAATTTTGATACNAGTTCAGTAACTNATATG	39	0	0	NA	NA	NA	7	7	Orphan	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	NA,NA|158aa|down_0|NZ_CP028183.1_507157_507631_+,NA|162aa|down_1|NZ_CP028183.1_507650_508136_+,NA|89aa|down_3|NZ_CP028183.1_508544_508811_+,NA|123aa|down_5|NZ_CP028183.1_509635_510004_+,NA|91aa|down_7|NZ_CP028183.1_511398_511671_+,NA|116aa|down_8|NZ_CP028183.1_511698_512046_+,NA|81aa|down_9|NZ_CP028183.1_512449_512692_+	NA|252aa|up_9|NZ_CP028183.1_489145_489901_-	pfam16160, DUF4866, Domain of unknown function (DUF4866)	NA|720aa|up_8|NZ_CP028183.1_490017_492177_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|383aa|up_7|NZ_CP028183.1_492173_493322_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|316aa|up_6|NZ_CP028183.1_493326_494274_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|532aa|up_5|NZ_CP028183.1_494429_496025_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|428aa|up_4|NZ_CP028183.1_496158_497442_+	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|367aa|up_3|NZ_CP028183.1_497442_498543_+	COG3535, COG3535, Uncharacterized conserved protein [Function unknown]	NA|517aa|up_2|NZ_CP028183.1_498535_500086_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|513aa|up_1|NZ_CP028183.1_500713_502252_+	pfam05043, Mga, Mga helix-turn-helix domain	NA|679aa|up_0|NZ_CP028183.1_502850_504887_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|158aa|down_0|NZ_CP028183.1_507157_507631_+	NA	NA|162aa|down_1|NZ_CP028183.1_507650_508136_+	NA	NA|102aa|down_2|NZ_CP028183.1_508163_508469_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|89aa|down_3|NZ_CP028183.1_508544_508811_+	NA	NA|95aa|down_4|NZ_CP028183.1_509350_509635_+	pfam11328, DUF3130, Protein of unknown function (DUF3130	NA|123aa|down_5|NZ_CP028183.1_509635_510004_+	NA	NA|459aa|down_6|NZ_CP028183.1_510000_511377_+	pfam04740, LXG, LXG domain of WXG superfamily	NA|91aa|down_7|NZ_CP028183.1_511398_511671_+	NA	NA|116aa|down_8|NZ_CP028183.1_511698_512046_+	NA	NA|81aa|down_9|NZ_CP028183.1_512449_512692_+	NA
GCF_003030165.1_ASM303016v1	NZ_CP028183	Listeria monocytogenes strain CFSAN054109 chromosome, complete genome	2	541119-541469	1,1,2	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas2	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	Unclear	GTTTTAGTTACTTATTGTGAAATGTAAATT,GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTNTGAAATGTAAATT	30,29,30	4	8	541277-541310|541277-541310|541277-541310|541341-541375|541276-541310|541276-541310|541276-541310|541340-541375	NZ_CP028183.1_2424829-2424862|NZ_CP028183.1_2601109-2601142|NZ_CP028183.1_1323830-1323797|NZ_CP028183.1_2600607-2600573|NZ_CP028183.1_2424828-2424862|NZ_CP028183.1_2601108-2601142|NZ_CP028183.1_1323831-1323797|NZ_CP028183.1_2600608-2600573	I-A:I-A:I-A	5,5,5	5	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	NA|133aa|up_5|NZ_CP028183.1_536108_536507_+,NA|193aa|down_0|NZ_CP028183.1_541858_542437_+	NA|217aa|up_9|NZ_CP028183.1_532171_532822_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NZ_CP028183.1_532930_534991_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NZ_CP028183.1_534994_535597_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NZ_CP028183.1_535624_536092_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NZ_CP028183.1_536108_536507_+	NA	NA|217aa|up_4|NZ_CP028183.1_536517_537168_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NZ_CP028183.1_537164_538211_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NZ_CP028183.1_538226_538520_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NZ_CP028183.1_538534_539806_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NZ_CP028183.1_539945_540881_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|NZ_CP028183.1_541858_542437_+	NA	NA|227aa|down_1|NZ_CP028183.1_542543_543224_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|NZ_CP028183.1_543248_543608_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|NZ_CP028183.1_543614_544073_-	pfam12802, MarR_2, MarR family	NA|144aa|down_4|NZ_CP028183.1_546390_546822_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_5|NZ_CP028183.1_546868_548299_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_6|NZ_CP028183.1_548419_549235_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|down_7|NZ_CP028183.1_549586_550309_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|down_8|NZ_CP028183.1_550324_552013_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|290aa|down_9|NZ_CP028183.1_552002_552872_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP
GCF_003030165.1_ASM303016v1	NZ_CP028183	Listeria monocytogenes strain CFSAN054109 chromosome, complete genome	3	556662-558958	2,2,3	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas2	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	Unclear	GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT	29,29,29	2	2	557406-557441|557663-557696	NZ_CP028183.1_2602838-2602803|NZ_CP028183.1_2602229-2602196	I-A:I-A:I-A	34,35,35	35	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	NA,NA|148aa|down_5|NZ_CP028183.1_564503_564947_+,NA|492aa|down_9|NZ_CP028183.1_569255_570731_+	NA|153aa|up_9|NZ_CP028183.1_543614_544073_-	pfam12802, MarR_2, MarR family	NA|144aa|up_8|NZ_CP028183.1_546390_546822_+	pfam00582, Usp, Universal stress protein family	NA|477aa|up_7|NZ_CP028183.1_546868_548299_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|up_6|NZ_CP028183.1_548419_549235_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|up_5|NZ_CP028183.1_549586_550309_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|up_4|NZ_CP028183.1_550324_552013_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|290aa|up_3|NZ_CP028183.1_552002_552872_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|261aa|up_2|NZ_CP028183.1_552849_553632_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|728aa|up_1|NZ_CP028183.1_553699_555883_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas2|93aa|up_0|NZ_CP028183.1_556185_556464_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|123aa|down_0|NZ_CP028183.1_559030_559399_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_1|NZ_CP028183.1_559545_560961_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|335aa|down_2|NZ_CP028183.1_561092_562097_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|439aa|down_3|NZ_CP028183.1_562128_563445_-	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|251aa|down_4|NZ_CP028183.1_563645_564398_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|148aa|down_5|NZ_CP028183.1_564503_564947_+	NA	NA|554aa|down_6|NZ_CP028183.1_564992_566654_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|444aa|down_7|NZ_CP028183.1_566909_568241_+	COG5361, COG5361, Uncharacterized conserved protein [Function unknown]	NA|247aa|down_8|NZ_CP028183.1_568285_569026_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|492aa|down_9|NZ_CP028183.1_569255_570731_+	NA
GCF_003030165.1_ASM303016v1	NZ_CP028183	Listeria monocytogenes strain CFSAN054109 chromosome, complete genome	4	2782278-2783764	3,4,3,4	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	csn2,cas2,cas1,cas9	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	Type II-C,Type II-B,Type II-A	GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,TTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	36,36,39,36	6	6	2782378-2782407|2782708-2782738|2783039-2783068|2783237-2783266|2783699-2783728|2782378-2782404	NZ_CP028183.1_1305214-1305185|NZ_CP028183.1_2598037-2598007|NZ_CP028183.1_2428219-2428248|NZ_CP028183.1_2422952-2422923|NZ_CP028183.1_1320802-1320773|NZ_CP028183.1_1305214-1305188	II-A,II-B:II-A,II-B:II-A,II-B:II-A,II-B	22,22,18,18	22	TypeII-C,TypeII-B,TypeII-A	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	NA|121aa|up_0|NZ_CP028183.1_2781389_2781752_-,NA|163aa|down_4|NZ_CP028183.1_2790278_2790767_-	NA|159aa|up_9|NZ_CP028183.1_2763996_2764473_-	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]	NA|996aa|up_8|NZ_CP028183.1_2764472_2767460_-	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|281aa|up_7|NZ_CP028183.1_2767957_2768800_+	COG1912, COG1912, Uncharacterized conserved protein [Function unknown]	NA|494aa|up_6|NZ_CP028183.1_2768847_2770329_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|296aa|up_5|NZ_CP028183.1_2770429_2771317_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|343aa|up_4|NZ_CP028183.1_2777107_2778136_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|509aa|up_3|NZ_CP028183.1_2778404_2779931_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|284aa|up_2|NZ_CP028183.1_2779972_2780824_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|141aa|up_1|NZ_CP028183.1_2780845_2781268_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|121aa|up_0|NZ_CP028183.1_2781389_2781752_-	NA	csn2|221aa|down_0|NZ_CP028183.1_2783892_2784555_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NZ_CP028183.1_2784544_2784886_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|289aa|down_2|NZ_CP028183.1_2784882_2785749_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1335aa|down_3|NZ_CP028183.1_2785749_2789754_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|163aa|down_4|NZ_CP028183.1_2790278_2790767_-	NA	NA|462aa|down_5|NZ_CP028183.1_2790776_2792162_-	pfam04740, LXG, LXG domain of WXG superfamily	NA|131aa|down_6|NZ_CP028183.1_2792453_2792846_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_7|NZ_CP028183.1_2792867_2793305_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|249aa|down_8|NZ_CP028183.1_2793499_2794246_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|266aa|down_9|NZ_CP028183.1_2794251_2795049_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]
