assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003031425.1_ASM303142v1	NZ_CP020467	Staphylococcus aureus strain CFSAN007896 chromosome, complete genome	1	858307-858386	1	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	CCGTCAGCTTCTGTGTTGGGGCCC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|187aa|up_9|NZ_CP020467.1_851281_851842_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP020467.1_851914_852532_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP020467.1_852687_853182_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP020467.1_853580_854003_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP020467.1_854150_854867_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP020467.1_854949_855489_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP020467.1_855638_855959_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP020467.1_856102_856459_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP020467.1_856616_856997_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP020467.1_857174_858053_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP020467.1_858643_859030_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP020467.1_859022_859319_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP020467.1_859568_860594_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP020467.1_860586_861282_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP020467.1_861299_862121_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP020467.1_862935_863130_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP020467.1_863363_864215_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP020467.1_864542_865304_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP020467.1_865401_866709_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|NZ_CP020467.1_866823_868065_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_003031425.1_ASM303142v1	NZ_CP020467	Staphylococcus aureus strain CFSAN007896 chromosome, complete genome	2	907427-907512	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	2	907457-907482|907457-907482	NZ_CP020467.1_2151824-2151849|NZ_CP020467.1_2211908-2211933	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|499aa|up_9|NZ_CP020467.1_896316_897813_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|NZ_CP020467.1_897805_898135_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP020467.1_898146_898575_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP020467.1_898567_900973_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP020467.1_901103_901487_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP020467.1_901550_902144_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP020467.1_902558_902936_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP020467.1_903297_904425_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP020467.1_904732_905923_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP020467.1_906031_907276_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP020467.1_907670_908600_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP020467.1_908841_910221_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP020467.1_910210_911416_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP020467.1_911766_913098_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP020467.1_913423_913999_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP020467.1_914003_914528_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP020467.1_914543_915119_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP020467.1_915278_918755_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP020467.1_918755_922409_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP020467.1_922574_923477_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_003031425.1_ASM303142v1	NZ_CP020467	Staphylococcus aureus strain CFSAN007896 chromosome, complete genome	3	1208784-1208876	3	CRISPRCasFinder	no	cas3	cas3,csa3,DEDDh,DinG,WYL	Unclear	TAAGAAACAGTAATCAATAAATTGATAACT	30	0	0	NA	NA	NA	1	1	Unclear	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|215aa|up_9|NZ_CP020467.1_1198658_1199303_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|214aa|up_8|NZ_CP020467.1_1199309_1199951_+	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|63aa|up_7|NZ_CP020467.1_1200331_1200520_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|NZ_CP020467.1_1200962_1201337_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|up_5|NZ_CP020467.1_1201351_1202998_+	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	cas3|687aa|up_4|NZ_CP020467.1_1203187_1205248_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|191aa|up_3|NZ_CP020467.1_1205450_1206023_+	PRK04424, PRK04424, transcription factor FapR	NA|329aa|up_2|NZ_CP020467.1_1206027_1207014_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|NZ_CP020467.1_1207006_1207933_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|NZ_CP020467.1_1207925_1208660_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|NZ_CP020467.1_1208965_1209199_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|down_1|NZ_CP020467.1_1209314_1210046_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|down_2|NZ_CP020467.1_1210192_1213759_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|down_3|NZ_CP020467.1_1213758_1215009_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|NZ_CP020467.1_1214995_1215328_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|NZ_CP020467.1_1215353_1216721_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|NZ_CP020467.1_1217155_1217431_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_7|NZ_CP020467.1_1217618_1218122_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_8|NZ_CP020467.1_1218121_1218859_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_9|NZ_CP020467.1_1218961_1219312_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCF_003031425.1_ASM303142v1	NZ_CP020467	Staphylococcus aureus strain CFSAN007896 chromosome, complete genome	4	1974519-1974643	4	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	38	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|132aa|up_6|NZ_CP020467.1_1966679_1967075_-,NA|51aa|up_5|NZ_CP020467.1_1967675_1967828_-,NA	NA|371aa|up_9|NZ_CP020467.1_1962546_1963659_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|274aa|up_8|NZ_CP020467.1_1963821_1964643_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|462aa|up_7|NZ_CP020467.1_1965098_1966484_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_6|NZ_CP020467.1_1966679_1967075_-	NA	NA|51aa|up_5|NZ_CP020467.1_1967675_1967828_-	NA	NA|200aa|up_4|NZ_CP020467.1_1967852_1968452_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_3|NZ_CP020467.1_1968610_1969081_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|381aa|up_2|NZ_CP020467.1_1969085_1970228_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|up_1|NZ_CP020467.1_1970363_1971092_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|354aa|up_0|NZ_CP020467.1_1972793_1973855_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_0|NZ_CP020467.1_1982697_1983144_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_1|NZ_CP020467.1_1983240_1984191_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|NZ_CP020467.1_1984196_1984652_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|NZ_CP020467.1_1984732_1986022_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_4|NZ_CP020467.1_1986314_1987409_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|579aa|down_5|NZ_CP020467.1_1987599_1989336_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_6|NZ_CP020467.1_1989625_1990168_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_7|NZ_CP020467.1_1990470_1991508_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_8|NZ_CP020467.1_1991659_1992637_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|279aa|down_9|NZ_CP020467.1_1992897_1993734_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
GCF_003031425.1_ASM303142v1	NZ_CP020467	Staphylococcus aureus strain CFSAN007896 chromosome, complete genome	5	2019464-2019655	1	CRT	no	DEDDh	cas3,csa3,DEDDh,DinG,WYL	Unclear	NNTCTNTGTTGGGGCCCNCACC	22	2	8	2019485-2019521|2019543-2019576|2019543-2019576|2019543-2019576|2019543-2019576|2019543-2019576|2019543-2019576|2019543-2019576	NZ_CP020467.1_813195-813231|NZ_CP020467.1_256066-256033|NZ_CP020467.1_348048-348015|NZ_CP020467.1_766855-766822|NZ_CP020467.1_1059474-1059507|NZ_CP020467.1_1796538-1796505|NZ_CP020467.1_2376075-2376108|NZ_CP020467.1_2520061-2520028	NA	3	3	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|37aa|up_9|NZ_CP020467.1_2010869_2010980_-,NA|31aa|up_5|NZ_CP020467.1_2013985_2014078_-,NA|49aa|down_0|NZ_CP020467.1_2019959_2020106_-	NA|37aa|up_9|NZ_CP020467.1_2010869_2010980_-	NA	NA|244aa|up_8|NZ_CP020467.1_2011065_2011797_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|up_7|NZ_CP020467.1_2011798_2013112_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|up_6|NZ_CP020467.1_2013403_2013904_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|up_5|NZ_CP020467.1_2013985_2014078_-	NA	DEDDh|185aa|up_4|NZ_CP020467.1_2014294_2014849_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|up_3|NZ_CP020467.1_2014915_2015986_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|up_2|NZ_CP020467.1_2016232_2016763_-	pfam11667, DUF3267, Putative zincin peptidase	NA|454aa|up_1|NZ_CP020467.1_2016932_2018294_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|316aa|up_0|NZ_CP020467.1_2018374_2019322_-	PRK13337, PRK13337, putative lipid kinase; Reviewed	NA|49aa|down_0|NZ_CP020467.1_2019959_2020106_-	NA	NA|476aa|down_1|NZ_CP020467.1_2020144_2021572_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|486aa|down_2|NZ_CP020467.1_2021584_2023042_-	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|101aa|down_3|NZ_CP020467.1_2023043_2023346_-	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|513aa|down_4|NZ_CP020467.1_2023712_2025251_+	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|400aa|down_5|NZ_CP020467.1_2025339_2026539_-	COG4851, CamS, Protein involved in sex pheromone biosynthesis [General function prediction only]	NA|668aa|down_6|NZ_CP020467.1_2026551_2028555_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|731aa|down_7|NZ_CP020467.1_2028558_2030751_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|231aa|down_8|NZ_CP020467.1_2030747_2031440_-	COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]	NA|101aa|down_9|NZ_CP020467.1_2031611_2031914_-	COG4496, COG4496, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_003031425.1_ASM303142v1	NZ_CP020467	Staphylococcus aureus strain CFSAN007896 chromosome, complete genome	6	2127744-2127832	5	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	GTTTTTGACTGACTTCTCAATCA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|114aa|up_9|NZ_CP020467.1_2121293_2121635_-,NA|127aa|up_7|NZ_CP020467.1_2122808_2123189_-,NA|128aa|up_4|NZ_CP020467.1_2126460_2126844_-,NA|68aa|up_3|NZ_CP020467.1_2126845_2127049_-,NA|52aa|up_2|NZ_CP020467.1_2127033_2127189_-,NA	NA|114aa|up_9|NZ_CP020467.1_2121293_2121635_-	NA	NA|214aa|up_8|NZ_CP020467.1_2122170_2122812_-	pfam16560, SAPI, Putative mobile pathogenicity island	NA|127aa|up_7|NZ_CP020467.1_2122808_2123189_-	NA	NA|570aa|up_6|NZ_CP020467.1_2123500_2125210_-	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|106aa|up_5|NZ_CP020467.1_2126142_2126460_-	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|128aa|up_4|NZ_CP020467.1_2126460_2126844_-	NA	NA|68aa|up_3|NZ_CP020467.1_2126845_2127049_-	NA	NA|52aa|up_2|NZ_CP020467.1_2127033_2127189_-	NA	NA|106aa|up_1|NZ_CP020467.1_2127185_2127503_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|73aa|up_0|NZ_CP020467.1_2127507_2127726_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|225aa|down_0|NZ_CP020467.1_2127898_2128573_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|391aa|down_1|NZ_CP020467.1_2128586_2129759_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|539aa|down_2|NZ_CP020467.1_2129827_2131444_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_3|NZ_CP020467.1_2131519_2131804_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_4|NZ_CP020467.1_2131978_2132722_+	pfam02517, Abi, CAAX protease self-immunity	NA|418aa|down_5|NZ_CP020467.1_2132746_2134000_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_6|NZ_CP020467.1_2134196_2134823_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_7|NZ_CP020467.1_2135183_2135969_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_8|NZ_CP020467.1_2136570_2136705_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_9|NZ_CP020467.1_2136940_2137504_+	smart00793, AgrB, Accessory gene regulator B
GCF_003031425.1_ASM303142v1	NZ_CP020467	Staphylococcus aureus strain CFSAN007896 chromosome, complete genome	7	2277570-2277771	1	PILER-CR	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	TCCTTGGTTGGCAGGTGCAGCTGGATGTGCTGTA	34	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|35aa|up_8|NZ_CP020467.1_2258985_2259090_-,NA|53aa|up_7|NZ_CP020467.1_2259769_2259928_+,NA	NA|549aa|up_9|NZ_CP020467.1_2256913_2258560_+	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|35aa|up_8|NZ_CP020467.1_2258985_2259090_-	NA	NA|53aa|up_7|NZ_CP020467.1_2259769_2259928_+	NA	NA|286aa|up_6|NZ_CP020467.1_2260586_2261444_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP020467.1_2261511_2262294_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP020467.1_2262525_2264331_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP020467.1_2265011_2266550_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP020467.1_2266584_2268717_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP020467.1_2268728_2269163_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP020467.1_2269162_2270269_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP020467.1_2278259_2279615_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP020467.1_2279641_2280574_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP020467.1_2280575_2281385_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP020467.1_2281574_2282483_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP020467.1_2288700_2289765_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|158aa|down_5|NZ_CP020467.1_2291544_2292018_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_6|NZ_CP020467.1_2292139_2293483_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_7|NZ_CP020467.1_2293660_2294344_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_8|NZ_CP020467.1_2294362_2295550_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	NA|172aa|down_9|NZ_CP020467.1_2295593_2296109_-	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase
GCF_003031425.1_ASM303142v1	NZ_CP020467	Staphylococcus aureus strain CFSAN007896 chromosome, complete genome	8	2336104-2336229	6	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	CCTCTTTACTCGAAAGCTCACAAAACTCTTGATATCA	37	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|56aa|up_8|NZ_CP020467.1_2326510_2326678_+,NA|61aa|up_1|NZ_CP020467.1_2335026_2335209_-,NA	NA|139aa|up_9|NZ_CP020467.1_2325851_2326268_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|56aa|up_8|NZ_CP020467.1_2326510_2326678_+	NA	NA|809aa|up_7|NZ_CP020467.1_2326674_2329101_+	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	NA|285aa|up_6|NZ_CP020467.1_2329160_2330015_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|272aa|up_5|NZ_CP020467.1_2330225_2331041_-	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|142aa|up_4|NZ_CP020467.1_2331335_2331761_+	pfam03642, MAP, MAP domain	NA|235aa|up_3|NZ_CP020467.1_2332151_2332856_-	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|555aa|up_2|NZ_CP020467.1_2332892_2334557_-	PRK08617, PRK08617, acetolactate synthase AlsS	NA|61aa|up_1|NZ_CP020467.1_2335026_2335209_-	NA	NA|60aa|up_0|NZ_CP020467.1_2335858_2336038_-	PRK09775, PRK09775, type II toxin-antitoxin system HipA family toxin YjjJ	NA|479aa|down_0|NZ_CP020467.1_2336286_2337723_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|133aa|down_1|NZ_CP020467.1_2338071_2338470_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_2|NZ_CP020467.1_2338483_2338921_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|265aa|down_3|NZ_CP020467.1_2339169_2339964_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|269aa|down_4|NZ_CP020467.1_2339968_2340775_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|287aa|down_5|NZ_CP020467.1_2340764_2341625_-	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|270aa|down_6|NZ_CP020467.1_2341621_2342431_-	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|523aa|down_7|NZ_CP020467.1_2342806_2344374_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|123aa|down_8|NZ_CP020467.1_2344626_2344995_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|315aa|down_9|NZ_CP020467.1_2345011_2345956_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional
GCF_003031425.1_ASM303142v1	NZ_CP020467	Staphylococcus aureus strain CFSAN007896 chromosome, complete genome	9	2376111-2376191	7	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	6	2376136-2376166|2376136-2376166|2376136-2376166|2376136-2376166|2376136-2376166|2376136-2376166	NZ_CP020467.1_1059537-1059567|NZ_CP020467.1_1676595-1676625|NZ_CP020467.1_813319-813349|NZ_CP020467.1_862618-862588|NZ_CP020467.1_907448-907418|NZ_CP020467.1_2008927-2008957	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|55aa|up_9|NZ_CP020467.1_2366640_2366805_+,NA|106aa|up_8|NZ_CP020467.1_2367049_2367367_+,NA|84aa|up_5|NZ_CP020467.1_2372491_2372743_+,NA|57aa|up_0|NZ_CP020467.1_2375883_2376054_+,NA	NA|55aa|up_9|NZ_CP020467.1_2366640_2366805_+	NA	NA|106aa|up_8|NZ_CP020467.1_2367049_2367367_+	NA	NA|1056aa|up_7|NZ_CP020467.1_2367553_2370721_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP020467.1_2370837_2372103_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP020467.1_2372491_2372743_+	NA	NA|255aa|up_4|NZ_CP020467.1_2372734_2373499_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP020467.1_2373661_2374102_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP020467.1_2374094_2375306_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP020467.1_2375407_2375758_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP020467.1_2375883_2376054_+	NA	NA|341aa|down_0|NZ_CP020467.1_2376334_2377357_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP020467.1_2377376_2377976_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP020467.1_2377982_2378216_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP020467.1_2378221_2378668_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP020467.1_2378681_2379167_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP020467.1_2379163_2380423_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP020467.1_2380485_2380980_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP020467.1_2380981_2381488_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP020467.1_2381516_2382521_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP020467.1_2382688_2383294_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
