The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP025560	Listeria monocytogenes strain PIR00545 chromosome, complete genome	3015231	118768	125293	3015231	tail	Listeria_phage(33.33%)	10	NA	NA
WP_003721739.1|118768_119221_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	47.9	4.0e-31
WP_003721740.1|119226_119562_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	4.0e-20
WP_003732219.1|119778_120207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014931069.1|120218_120635_+	hypothetical protein	NA	A8ASQ1	Listeria_phage	39.3	7.7e-21
WP_012952083.1|120912_121302_+	DUF5072 domain-containing protein	NA	NA	NA	NA	NA
WP_003721744.1|121314_121827_+|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	62.7	1.2e-47
WP_003721745.1|121874_122177_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014601581.1|122218_122623_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061113976.1|122609_124478_+	hypothetical protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	45.8	3.5e-20
WP_009911828.1|124474_125293_+|tail	phage tail family protein	tail	A0A060AFE1	Staphylococcus_phage	35.0	7.2e-39
>prophage 2
NZ_CP025560	Listeria monocytogenes strain PIR00545 chromosome, complete genome	3015231	682486	738867	3015231	transposase,head,capsid,holin,terminase,integrase,protease,portal,tail	Listeria_phage(42.42%)	66	692180:692197	727868:727885
WP_023552234.1|682486_683638_-|integrase	site-specific integrase	integrase	A8ATX2	Listeria_phage	46.3	3.4e-87
WP_023552237.1|683659_684373_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014930667.1|684427_684928_-	hypothetical protein	NA	A0A1S7FYX8	Listeria_phage	31.9	1.9e-13
WP_012951299.1|684940_685267_-	helix-turn-helix transcriptional regulator	NA	Q0H244	Geobacillus_phage	47.1	1.6e-13
WP_023552239.1|685440_685632_+	helix-turn-helix transcriptional regulator	NA	Q0H243	Geobacillus_phage	57.6	4.7e-10
WP_012951301.1|685729_686056_+	DUF771 domain-containing protein	NA	A0A2H4J474	uncultured_Caudovirales_phage	41.1	4.9e-15
WP_023552243.1|686228_687143_+	hypothetical protein	NA	A0A1W6JNI1	Staphylococcus_phage	51.5	7.8e-58
WP_023552245.1|687144_687501_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023552247.1|687497_687914_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023552251.1|688101_688821_+	DUF2786 domain-containing protein	NA	A0A1U9WR73	Streptococcus_virus	29.7	3.5e-21
WP_061114107.1|688824_689127_+	hypothetical protein	NA	A0A059T695	Listeria_phage	94.3	3.3e-21
WP_031694732.1|689123_689525_+	hypothetical protein	NA	A8ASP1	Listeria_phage	58.2	6.0e-39
WP_031694733.1|689521_690007_+	pentapeptide repeat-containing protein	NA	A0A059T6G6	Listeria_phage	93.2	2.0e-44
WP_023552261.1|690003_690465_+	hypothetical protein	NA	D9J0I6	Brochothrix_phage	35.9	6.7e-18
WP_023552263.1|690461_690845_+	hypothetical protein	NA	A8ATZ3	Listeria_phage	77.2	5.4e-45
WP_023552266.1|690865_691114_+	DUF3850 domain-containing protein	NA	A0A059T7N3	Listeria_phage	84.0	5.0e-28
WP_023552268.1|691113_691695_+	DUF3310 domain-containing protein	NA	A0A059T5J6	Listeria_phage	76.3	2.3e-76
WP_031694734.1|691694_692174_+	single-stranded DNA-binding protein	NA	A8ASP5	Listeria_phage	83.8	2.3e-69
692180:692197	attL	AAAGGAGCGATGAAAATG	NA	NA	NA	NA
WP_023552274.1|692194_692434_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031694735.1|692424_692610_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023552279.1|692680_693199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023552281.1|693195_693738_+|integrase	tyrosine-type recombinase/integrase	integrase	H0USV4	Bacillus_phage	53.3	2.5e-48
WP_061114108.1|693753_694086_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031694737.1|694356_694683_+	hypothetical protein	NA	NA	NA	NA	NA
WP_049961622.1|694679_695039_+	HNH endonuclease	NA	A0A075M5R4	Enterococcus_phage	46.2	5.4e-15
WP_012951321.1|695137_695665_+|terminase	phage terminase small subunit P27 family	terminase	J7KC46	Streptococcus_phage	46.7	6.1e-31
WP_012951322.1|695633_697385_+|terminase	terminase large subunit	terminase	A0A2H4JCI4	uncultured_Caudovirales_phage	50.7	4.1e-156
WP_023552290.1|697391_697592_+	DUF1056 family protein	NA	NA	NA	NA	NA
WP_012951323.1|697594_698830_+|portal	phage portal protein	portal	A0A2H4JAR2	uncultured_Caudovirales_phage	42.1	3.6e-82
WP_012951324.1|698826_699393_+|head,protease	HK97 family phage prohead protease	head,protease	A0A1D6Z2A7	Staphylococcus_phage	52.2	1.0e-44
WP_012951325.1|699456_700626_+|capsid	phage major capsid protein	capsid	A0A060AI54	Enterococcus_phage	38.1	2.1e-44
WP_012951326.1|700674_701013_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2H4JB77	uncultured_Caudovirales_phage	37.8	8.1e-13
WP_012951327.1|700982_701303_+|head	phage head closure protein	head	NA	NA	NA	NA
WP_012951328.1|701296_701662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014930680.1|701664_702063_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012951330.1|702083_702659_+|tail	major tail protein	tail	M1PRQ7	Streptococcus_phage	42.4	1.2e-32
WP_012951331.1|702748_703096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014930682.1|703292_707492_+|tail	phage tail tape measure protein	tail	J7KDT4	Streptococcus_phage	33.0	1.2e-12
WP_014930683.1|707484_709728_+|tail	phage tail component protein	tail	A0A059T682	Listeria_phage	29.4	1.2e-56
WP_031694739.1|709733_712025_+	phage minor structural protein	NA	A0A059T7Y6	Listeria_phage	37.9	4.4e-134
WP_023552297.1|712017_713079_+	hypothetical protein	NA	A0A059T7R4	Listeria_phage	51.0	1.2e-94
WP_003722523.1|713117_713483_+	hypothetical protein	NA	Q9T1A0	Listeria_phage	100.0	7.4e-12
WP_031694741.1|713495_713780_+|holin	holin	holin	A8ASL4	Listeria_phage	94.6	3.5e-41
WP_061114110.1|716013_716928_+|protease	trypsin-like serine protease	protease	NA	NA	NA	NA
WP_003732618.1|716927_717287_+	lipoprotein	NA	NA	NA	NA	NA
WP_003732616.1|717818_718352_+	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_003722839.1|718415_719333_+	aldo/keto reductase family oxidoreductase	NA	NA	NA	NA	NA
WP_009924467.1|721564_722293_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061114111.1|722435_723086_+	transaldolase	NA	M4SLG0	Cyanophage	30.2	2.6e-15
WP_077441577.1|723128_724949_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	28.3	2.2e-48
WP_003732612.1|725183_726575_+	amino acid permease	NA	NA	NA	NA	NA
WP_061114112.1|726663_727503_+	VOC family protein	NA	NA	NA	NA	NA
WP_003721764.1|727585_727870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003721765.1|727967_728918_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
727868:727885	attR	CATTTTCATCGCTCCTTT	NA	NA	NA	NA
WP_003721766.1|728941_729583_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010989537.1|729625_732316_+	YhgE/Pip domain-containing protein	NA	NA	NA	NA	NA
WP_003721768.1|732361_733009_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003721769.1|733017_733554_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003733993.1|733540_734461_-	DUF975 family protein	NA	NA	NA	NA	NA
WP_003721771.1|734651_734861_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003732609.1|734928_735636_+	serine/threonine protein phosphatase	NA	A0A249Y183	Enterococcus_phage	27.8	2.5e-19
WP_003721773.1|735679_736243_-	DUF420 domain-containing protein	NA	NA	NA	NA	NA
WP_009931746.1|736362_736779_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061114115.1|736830_737466_+	endonuclease III domain-containing protein	NA	NA	NA	NA	NA
WP_003721776.1|737455_738352_-	Rgg/GadR/MutR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009931745.1|738582_738867_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP025560	Listeria monocytogenes strain PIR00545 chromosome, complete genome	3015231	1158399	1165823	3015231		Hokovirus(33.33%)	8	NA	NA
WP_003721506.1|1158399_1158783_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	40.7	1.4e-16
WP_003732709.1|1158804_1159788_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	34.6	4.1e-12
WP_061114181.1|1159802_1160816_+	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	32.0	7.9e-11
WP_003721509.1|1161024_1162515_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	49.7	9.5e-114
WP_061114182.1|1162526_1163351_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.9	4.4e-68
WP_009925410.1|1163363_1163672_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_061114183.1|1163733_1164138_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_010989661.1|1164266_1165823_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	28.1	2.3e-17
>prophage 4
NZ_CP025560	Listeria monocytogenes strain PIR00545 chromosome, complete genome	3015231	1252466	1357483	3015231	head,capsid,holin,terminase,integrase,protease,portal,tRNA,tail	Listeria_phage(67.74%)	114	1259742:1259758	1298418:1298434
WP_003736387.1|1252466_1253519_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	34.9	1.3e-29
WP_003732769.1|1253518_1255927_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_014600776.1|1256087_1256789_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.4	3.0e-33
WP_107671439.1|1256802_1260213_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
1259742:1259758	attL	TAGTAAAGCAATTTTAA	NA	NA	NA	NA
WP_003721623.1|1260310_1260763_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_061114214.1|1260778_1263979_+	MMPL family transporter	NA	NA	NA	NA	NA
WP_003721625.1|1264085_1264760_+	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	47.7	1.7e-49
WP_077441554.1|1264796_1265723_-	ribonuclease HIII	NA	NA	NA	NA	NA
WP_003740576.1|1265876_1266140_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003723849.1|1266139_1266682_+	CvpA family protein	NA	NA	NA	NA	NA
WP_061114216.1|1266774_1268487_+	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	24.8	3.9e-18
WP_003732776.1|1268509_1270867_+	endonuclease MutS2	NA	Q94M10	Lactobacillus_phage	50.4	1.0e-21
WP_003723853.1|1270947_1271259_+	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	39.6	5.4e-19
WP_061114217.1|1271334_1273146_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003732778.1|1273334_1274549_+	aspartate kinase	NA	NA	NA	NA	NA
WP_077947865.1|1274604_1275099_-	YslB family protein	NA	NA	NA	NA	NA
WP_003723856.1|1275246_1276047_+	glutamate racemase	NA	NA	NA	NA	NA
WP_014601941.1|1276059_1276806_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_009932644.1|1276809_1277421_+	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_003733802.1|1277457_1277982_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_061114219.1|1278266_1279421_-|integrase	site-specific integrase	integrase	A0A059T688	Listeria_phage	93.8	3.0e-208
WP_061114220.1|1279575_1280385_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061114221.1|1280404_1280974_-	DUF4352 domain-containing protein	NA	R4IBV3	Listeria_phage	91.7	4.1e-09
WP_061114222.1|1281024_1281477_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	92.0	1.4e-79
WP_061114223.1|1281493_1281817_-	helix-turn-helix transcriptional regulator	NA	R4IDX0	Listeria_phage	71.0	5.0e-36
WP_061114224.1|1282084_1282288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077947866.1|1282255_1282648_-	DUF2513 domain-containing protein	NA	A0A1Q1PVT8	Staphylococcus_phage	41.8	2.2e-17
WP_009931099.1|1282714_1283038_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061114225.1|1283052_1283259_+	helix-turn-helix transcriptional regulator	NA	Q8W5X9	Listeria_phage	94.1	4.6e-27
WP_061114226.1|1283261_1283504_+	hypothetical protein	NA	Q8W5X8	Listeria_phage	97.5	9.2e-43
WP_061114227.1|1283506_1283692_+	hypothetical protein	NA	A0A059T7Z3	Listeria_phage	93.4	4.6e-26
WP_061114228.1|1284417_1284717_+	hypothetical protein	NA	A8ASN6	Listeria_phage	92.2	3.7e-41
WP_061114229.1|1284697_1285141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061114230.1|1285157_1285715_+	DUF1642 domain-containing protein	NA	A8ATD8	Listeria_phage	50.5	2.4e-46
WP_003722558.1|1285717_1285915_+	hypothetical protein	NA	A0A0B5CU49	Listeria_phage	95.4	2.0e-27
WP_061114231.1|1285911_1286295_+	hypothetical protein	NA	A0A0B5CYR4	Listeria_phage	58.3	2.3e-35
WP_061114232.1|1286291_1286687_+	pentapeptide repeat-containing protein	NA	A8ASP3	Listeria_phage	78.8	2.9e-38
WP_061114233.1|1286683_1287076_+	hypothetical protein	NA	A8ATD9	Listeria_phage	82.8	6.9e-56
WP_061114234.1|1287179_1287452_+	hypothetical protein	NA	A0A059T7Z9	Listeria_phage	86.7	1.5e-38
WP_061114235.1|1287448_1287643_+	hypothetical protein	NA	A8ASP4	Listeria_phage	79.7	1.4e-22
WP_061114236.1|1287697_1288258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061114237.1|1288529_1288730_+	hypothetical protein	NA	A8ATE8	Listeria_phage	55.4	1.2e-11
WP_061114238.1|1288726_1289338_+	hypothetical protein	NA	B6D7K1	Listeria_phage	50.0	4.0e-50
WP_061114239.1|1289353_1289587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061114240.1|1289583_1290354_+	DUF1351 domain-containing protein	NA	B6D7K2	Listeria_phage	27.0	6.6e-18
WP_061114241.1|1290356_1290992_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061114242.1|1291059_1292748_+	hypothetical protein	NA	A8ATS1	Listeria_phage	43.1	5.2e-124
WP_061114243.1|1292750_1294556_+	DNA primase	NA	A8ATS2	Listeria_phage	40.8	9.7e-129
WP_061114244.1|1294860_1295130_+	hypothetical protein	NA	W0GBM0	Listeria_phage	84.3	9.6e-17
WP_061114338.1|1295240_1295771_+	DUF3310 domain-containing protein	NA	A0A059T7T5	Listeria_phage	72.3	5.3e-67
WP_061114245.1|1295962_1296388_+	DUF722 domain-containing protein	NA	A8ATF6	Listeria_phage	98.6	1.5e-72
WP_009928009.1|1296994_1297309_+	HNH endonuclease	NA	A8ATF8	Listeria_phage	99.0	3.8e-57
WP_061114246.1|1297357_1297714_+	hypothetical protein	NA	A0A059T7Y1	Listeria_phage	97.0	4.5e-46
WP_061114247.1|1297710_1299354_+|terminase	terminase large subunit	terminase	A0A059T7Q8	Listeria_phage	98.7	0.0e+00
1298418:1298434	attR	TAGTAAAGCAATTTTAA	NA	NA	NA	NA
WP_061114248.1|1299363_1299753_-	DUF2513 domain-containing protein	NA	A0A2I7SCV0	Paenibacillus_phage	36.4	9.7e-18
WP_061114249.1|1299803_1300934_+|portal	phage portal protein	portal	A8AT96	Listeria_phage	96.3	3.9e-208
WP_061114250.1|1300930_1301647_+|protease	Clp protease ClpP	protease	A0A1S5SFF8	Streptococcus_phage	56.5	6.1e-66
WP_061114251.1|1301673_1302825_+|capsid	phage major capsid protein	capsid	A8AT98	Listeria_phage	92.7	7.9e-201
WP_061114252.1|1303011_1303311_+	hypothetical protein	NA	A0A059T7R0	Listeria_phage	97.0	1.3e-46
WP_061114253.1|1303294_1303660_+|head,tail	head-tail adaptor protein	head,tail	A0A059T6F2	Listeria_phage	96.7	2.7e-62
WP_061114254.1|1303656_1304058_+	hypothetical protein	NA	A8ATA2	Listeria_phage	96.2	3.4e-66
WP_061114255.1|1304054_1304438_+	hypothetical protein	NA	A0A059T681	Listeria_phage	94.5	5.2e-64
WP_061114256.1|1304458_1305046_+|tail	phage tail protein	tail	A0A059T7Y4	Listeria_phage	97.4	2.4e-105
WP_061114257.1|1305115_1305448_+	hypothetical protein	NA	A8ATA5	Listeria_phage	90.9	1.3e-47
WP_061114258.1|1305663_1310586_+|tail	phage tail tape measure protein	tail	A0A059T5F4	Listeria_phage	95.5	0.0e+00
WP_061114259.1|1310582_1312232_+|tail	phage tail protein	tail	A0A059T682	Listeria_phage	98.9	0.0e+00
WP_061114260.1|1312247_1314542_+	hypothetical protein	NA	A0A059T7Y6	Listeria_phage	97.5	0.0e+00
WP_061114261.1|1314531_1315626_+	hypothetical protein	NA	A0A059T7R4	Listeria_phage	97.3	1.2e-201
WP_031659993.1|1315677_1315986_+	hypothetical protein	NA	A0A059T5E6	Listeria_phage	88.9	3.9e-38
WP_061114262.1|1315985_1316252_+|holin	phage holin	holin	A0A059T684	Listeria_phage	97.7	2.8e-40
WP_061114263.1|1316251_1317097_+	peptidase M15	NA	A0A059T7Y8	Listeria_phage	94.7	1.4e-138
WP_061114264.1|1317284_1317770_+	SocA family protein	NA	I6R0L8	Salmonella_phage	40.6	4.6e-17
WP_061114265.1|1318279_1318513_+	hypothetical protein	NA	R4IDW6	Listeria_phage	96.1	1.0e-35
WP_149806370.1|1318712_1319324_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061114268.1|1320159_1321518_+	DUF1254 domain-containing protein	NA	NA	NA	NA	NA
WP_061114269.1|1321560_1322154_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009914084.1|1322307_1322715_-	glyoxalase/bleomycin resistance/extradiol dioxygenase family protein	NA	NA	NA	NA	NA
WP_009924169.1|1322879_1323479_+	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	41.0	5.8e-30
WP_003723543.1|1323510_1323771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014600786.1|1323894_1325307_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.8	8.3e-51
WP_003723545.1|1325331_1325595_+	DUF3116 domain-containing protein	NA	NA	NA	NA	NA
WP_003723546.1|1325762_1326239_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA	NA
WP_061114270.1|1326276_1326522_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012951568.1|1326518_1327724_-	MFS transporter	NA	NA	NA	NA	NA
WP_003723549.1|1327928_1328588_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_003723550.1|1328629_1328824_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003723551.1|1328890_1329739_-	YitT family protein	NA	NA	NA	NA	NA
WP_003732787.1|1330358_1331072_+	trehalose operon repressor	NA	NA	NA	NA	NA
WP_026749934.1|1331102_1332749_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
WP_003723556.1|1332767_1334252_-	PTS system trehalose-specific EIIBC component	NA	NA	NA	NA	NA
WP_061114271.1|1334367_1334820_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_012951571.1|1334866_1335331_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003723559.1|1335519_1336440_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003723560.1|1336459_1337707_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	51.8	1.2e-106
WP_003723561.1|1337690_1338521_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	42.4	4.3e-47
WP_014600789.1|1338656_1339796_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003723563.1|1339876_1340272_-	helix-turn-helix transcriptional regulator	NA	A9D9J6	Lactobacillus_prophage	57.4	1.3e-14
WP_003727524.1|1340422_1340638_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010989719.1|1340756_1341290_+|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_003732795.1|1341307_1341973_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003732796.1|1342234_1343173_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003723884.1|1343287_1344571_+	trigger factor	NA	NA	NA	NA	NA
WP_003723886.1|1344756_1346016_+|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.2	1.4e-145
WP_003723887.1|1346134_1346701_+	type I signal peptidase SipX	NA	NA	NA	NA	NA
WP_009924619.1|1346735_1347305_+	type I signal peptidase SipY	NA	NA	NA	NA	NA
WP_003723889.1|1347406_1347949_+	type I signal peptidase SipZ	NA	NA	NA	NA	NA
WP_003723890.1|1347958_1348822_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_003723891.1|1348818_1349604_+	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	39.2	3.0e-26
WP_061114272.1|1349737_1350598_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_009924617.1|1350869_1352948_+	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	37.7	1.4e-107
WP_061114273.1|1353010_1354315_+|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
WP_009911635.1|1354597_1355500_+	tyrosine recombinase XerC	NA	A0A097EYL9	Mycobacterium_phage	28.6	1.2e-13
WP_003724001.1|1355520_1356060_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_010989722.1|1356073_1357483_+|protease	ATP-dependent protease ATPase subunit HslU	protease	W6AS21	Erwinia_phage	27.7	4.9e-43
>prophage 5
NZ_CP025560	Listeria monocytogenes strain PIR00545 chromosome, complete genome	3015231	1818272	1865293	3015231	head,capsid,holin,terminase,protease,portal,tail	Erysipelothrix_phage(71.43%)	50	NA	NA
WP_061114347.1|1818272_1819718_-	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	56.0	2.6e-140
WP_061114348.1|1819896_1820439_+	recombinase family protein	NA	A0A219YB42	Aeromonas_phage	30.2	1.8e-17
WP_061114349.1|1820532_1822101_-	recombinase family protein	NA	A0A2K5B2B4	Erysipelothrix_phage	59.4	2.3e-166
WP_061114350.1|1822102_1822519_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061114351.1|1822518_1824081_-	recombinase family protein	NA	A0A2K5B2B2	Erysipelothrix_phage	48.4	6.4e-137
WP_061114352.1|1824134_1824362_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061114353.1|1824501_1824846_+	winged helix-turn-helix transcriptional regulator	NA	A0A218MNF3	uncultured_virus	40.6	3.8e-10
WP_061114354.1|1824842_1826156_+	arsenic transporter	NA	A0A2H4PQU3	Staphylococcus_phage	70.1	4.4e-163
WP_061114355.1|1826171_1826573_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	68.0	2.1e-47
WP_061114356.1|1826688_1827882_-	chromate transporter	NA	NA	NA	NA	NA
WP_061114357.1|1827893_1828202_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_061114358.1|1828398_1829106_-	amidase	NA	H7BVK7	unidentified_phage	41.3	3.5e-42
WP_061114359.1|1829102_1829513_-|holin	phage holin family protein	holin	A0A2K5B2A2	Erysipelothrix_phage	69.1	6.3e-52
WP_061114360.1|1829589_1832061_-	glycosyl hydrolase	NA	A0A2K5B2A1	Erysipelothrix_phage	64.6	0.0e+00
WP_061114412.1|1832057_1832633_-	hypothetical protein	NA	A0A2K5B2A0	Erysipelothrix_phage	51.9	1.3e-47
WP_057995379.1|1832648_1832843_-	hypothetical protein	NA	A0A2K5B299	Erysipelothrix_phage	55.4	1.4e-14
WP_061114361.1|1832854_1835374_-	hypothetical protein	NA	A0A2K5B298	Erysipelothrix_phage	60.6	3.6e-307
WP_061114362.1|1835381_1836155_-|tail	phage tail family protein	tail	A0A2I4R672	Erysipelothrix_phage	47.3	9.7e-70
WP_061114363.1|1836170_1838792_-|tail	phage tail tape measure protein	tail	B6CXF2	Clostridium_phage	47.8	4.3e-69
WP_107671440.1|1839051_1839438_-	hypothetical protein	NA	A0A2K5B295	Erysipelothrix_phage	64.3	6.6e-35
WP_061114365.1|1839450_1840047_-|tail	phage tail protein	tail	A0A2K5B294	Erysipelothrix_phage	77.4	1.7e-82
WP_107671441.1|1840050_1840398_-	hypothetical protein	NA	A0A2K5B293	Erysipelothrix_phage	50.9	9.2e-28
WP_061114367.1|1840394_1840826_-	HK97 gp10 family phage protein	NA	A0A2K5B292	Erysipelothrix_phage	62.2	3.0e-44
WP_061114368.1|1840818_1841154_-|head,tail	head-tail adaptor protein	head,tail	A0A2K5B291	Erysipelothrix_phage	51.4	3.5e-24
WP_061114369.1|1841157_1841466_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2K5B290	Erysipelothrix_phage	77.5	5.4e-40
WP_061114370.1|1841480_1841708_-	hypothetical protein	NA	A0A2K5B289	Erysipelothrix_phage	64.0	9.0e-16
WP_061114371.1|1841726_1842923_-|capsid	phage major capsid protein	capsid	A0A2I4R671	Erysipelothrix_phage	68.1	1.6e-156
WP_061114372.1|1842938_1843622_-|protease	Clp protease ClpP	protease	Q6DMU1	Streptococcus_phage	62.8	8.3e-73
WP_061114373.1|1843590_1844874_-|portal	phage portal protein	portal	A0A2K5B287	Erysipelothrix_phage	78.3	2.5e-187
WP_061114413.1|1844895_1846494_-|terminase	terminase large subunit	terminase	A0A2K5B285	Erysipelothrix_phage	77.7	1.8e-243
WP_061114374.1|1846562_1847027_-	gamma-glutamylcyclotransferase	NA	G3MAQ5	Bacillus_virus	35.0	1.4e-15
WP_061114375.1|1847069_1847969_-	amidoligase	NA	A0A2K9V489	Faecalibacterium_phage	38.6	6.5e-49
WP_061114376.1|1848071_1848299_-	DUF4314 domain-containing protein	NA	NA	NA	NA	NA
WP_061114377.1|1848295_1848946_-	hypothetical protein	NA	A0A2K5B280	Erysipelothrix_phage	45.0	2.1e-41
WP_061114378.1|1849034_1850273_-	DNA modification methylase	NA	A0A2I4R670	Erysipelothrix_phage	68.4	3.5e-170
WP_077947868.1|1850253_1851429_-	methionine adenosyltransferase	NA	A0A2K5B278	Erysipelothrix_phage	67.3	4.1e-152
WP_061114380.1|1851447_1851999_-	hypothetical protein	NA	A0A2K5B277	Erysipelothrix_phage	66.7	1.5e-69
WP_061114381.1|1852104_1852470_-	HNH endonuclease	NA	A0A2K5B276	Erysipelothrix_phage	60.5	1.9e-39
WP_061114382.1|1852684_1853143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061114383.1|1853139_1854498_-	DEAD/DEAH box helicase	NA	A0A2K5B273	Erysipelothrix_phage	66.0	5.9e-155
WP_061114384.1|1854478_1854760_-	VRR-NUC domain-containing protein	NA	A0A2K5B272	Erysipelothrix_phage	55.6	3.6e-22
WP_061114385.1|1855019_1857365_-	hypothetical protein	NA	A0A2K5B271	Erysipelothrix_phage	48.6	5.9e-219
WP_061114414.1|1857383_1858160_-	phage antirepressor	NA	A0A0B5A507	Paenibacillus_phage	49.0	6.6e-66
WP_061114386.1|1858252_1860187_-	DNA polymerase	NA	A0A2K5B2B0	Erysipelothrix_phage	63.4	9.1e-242
WP_061114387.1|1860183_1860738_-	DUF2815 family protein	NA	A0A2K5B2A9	Erysipelothrix_phage	71.3	3.6e-66
WP_061114388.1|1860740_1861871_-	DUF2800 domain-containing protein	NA	A0A2K5B2A8	Erysipelothrix_phage	65.0	1.4e-141
WP_061114389.1|1861867_1862185_-	hypothetical protein	NA	A0A2K5B2A7	Erysipelothrix_phage	42.3	1.3e-12
WP_061114390.1|1862186_1862390_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061114391.1|1862492_1862996_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_061114392.1|1863403_1865293_-	helix-turn-helix transcriptional regulator	NA	E4ZFJ9	Streptococcus_phage	31.0	1.2e-81
>prophage 6
NZ_CP025560	Listeria monocytogenes strain PIR00545 chromosome, complete genome	3015231	1941088	1949374	3015231		Synechococcus_phage(33.33%)	8	NA	NA
WP_003722243.1|1941088_1941655_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.9	7.0e-25
WP_061114410.1|1941651_1942701_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	42.9	1.7e-61
WP_003722245.1|1942719_1944147_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	1.1e-53
WP_014602076.1|1944131_1946351_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.2	1.3e-159
WP_003733240.1|1946343_1947027_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_015454911.1|1947030_1947276_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_010989809.1|1947287_1948001_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	38.3	2.3e-41
WP_003722250.1|1948081_1949374_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.6	7.2e-17
>prophage 7
NZ_CP025560	Listeria monocytogenes strain PIR00545 chromosome, complete genome	3015231	2605893	2613737	3015231		Streptococcus_phage(50.0%)	7	NA	NA
WP_003722604.1|2605893_2606865_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
WP_003722605.1|2606872_2607841_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	43.3	6.7e-68
WP_010990001.1|2607842_2608718_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	3.2e-08
WP_061113884.1|2608825_2610556_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	53.3	4.3e-174
WP_077441765.1|2610597_2611659_-	galactose mutarotase	NA	NA	NA	NA	NA
WP_009924988.1|2611675_2612659_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	37.2	2.6e-51
WP_061113885.1|2612777_2613737_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.7	2.0e-88
>prophage 1
NZ_CP025561	Listeria monocytogenes strain PIR00545 plasmid pPIR00545, complete sequence	57553	0	17091	57553	transposase	Lactobacillus_phage(20.0%)	18	NA	NA
WP_115914824.1|250_1138_+|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	51.1	7.3e-69
WP_003731678.1|1227_1944_-	AP2 domain-containing protein	NA	O03945	Lactobacillus_phage	31.0	3.8e-20
WP_003728517.1|1959_2682_-	CRISPR-associated protein Cas5	NA	NA	NA	NA	NA
WP_003728518.1|2685_3111_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003728519.1|3111_3360_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003728520.1|3481_3970_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003728521.1|4128_4512_-	DUF3850 domain-containing protein	NA	C9E2N9	Enterococcus_phage	53.4	2.2e-14
WP_003731676.1|4524_5187_-	DUF2786 domain-containing protein	NA	NA	NA	NA	NA
WP_003728462.1|5186_5513_-	hypothetical protein	NA	A0A2K9V3N4	Faecalibacterium_phage	40.8	3.2e-06
WP_003728463.1|5643_5895_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003728464.1|5955_6198_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003728465.1|6191_6533_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA	NA
WP_003728466.1|6725_8861_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	64.5	1.6e-247
WP_003728467.1|8860_9220_-	Cd(II)-sensing metalloregulatory transcriptional repressor CadC	NA	E4ZFI8	Streptococcus_phage	50.0	3.1e-26
WP_045554658.1|9499_10054_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	46.1	5.4e-38
WP_061114080.1|10057_12973_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	36.7	1.9e-174
WP_031644889.1|14155_16312_-	copper-translocating P-type ATPase CopB	NA	A0A218MNH6	uncultured_virus	31.0	1.1e-70
WP_003728472.1|16527_17091_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.1	2.0e-40
>prophage 2
NZ_CP025561	Listeria monocytogenes strain PIR00545 plasmid pPIR00545, complete sequence	57553	20883	23528	57553	transposase	Streptococcus_phage(100.0%)	2	NA	NA
WP_043993356.1|20883_21525_+|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	83.6	3.0e-101
WP_003728476.1|21644_23528_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	35.3	5.6e-87
>prophage 3
NZ_CP025561	Listeria monocytogenes strain PIR00545 plasmid pPIR00545, complete sequence	57553	26740	33833	57553	transposase	Erysipelothrix_phage(20.0%)	8	NA	NA
WP_003728481.1|26740_28105_-	FAD-dependent oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	23.5	1.9e-07
WP_002389568.1|28728_29409_+|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	90.7	2.6e-119
WP_072235488.1|29974_30382_-	hypothetical protein	NA	H2DE57	Erwinia_phage	46.0	1.4e-11
WP_012952173.1|30423_30768_-	TnpV protein	NA	NA	NA	NA	NA
WP_011011011.1|31480_31879_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003728486.1|32052_32388_+	helix-turn-helix transcriptional regulator	NA	A0A139ZPK3	Marinitoga_camini_virus	35.0	2.8e-05
WP_003728487.1|32424_32955_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012952172.1|33068_33833_-	Fic family protein	NA	A0A0G3Y4Q5	Ostreid_herpesvirus	29.4	2.6e-06
>prophage 4
NZ_CP025561	Listeria monocytogenes strain PIR00545 plasmid pPIR00545, complete sequence	57553	38508	41180	57553	transposase	Lactococcus_phage(66.67%)	3	NA	NA
WP_003728496.1|38508_39735_+|transposase	IS21 family transposase	transposase	A0A059NT83	Lactococcus_phage	60.6	4.7e-135
WP_003755398.1|39703_40501_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	63.2	3.3e-81
WP_023553716.1|40592_41180_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.7	2.5e-33
>prophage 5
NZ_CP025561	Listeria monocytogenes strain PIR00545 plasmid pPIR00545, complete sequence	57553	44617	54223	57553	transposase,protease	Enterococcus_phage(16.67%)	11	NA	NA
WP_003728501.1|44617_45592_+	AAA family ATPase	NA	F0PIG8	Enterococcus_phage	35.0	2.4e-33
WP_003728502.1|45569_45866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003728503.1|45916_47197_-	Y-family DNA polymerase	NA	O64031	Bacillus_phage	44.9	5.2e-92
WP_003728504.1|47184_47529_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003728505.1|47733_48468_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_013315188.1|48642_49983_-|transposase	IS3 family transposase	transposase	A0A0C5AC89	Paenibacillus_phage	38.6	1.1e-31
WP_003728507.1|50258_52373_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	39.1	3.4e-117
WP_003728509.1|52800_53037_-	helix-turn-helix transcriptional regulator	NA	A0A097PBE6	Streptococcus_pyogenes_phage	53.4	6.7e-14
WP_003731679.1|52999_53278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003728510.1|53397_53625_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003728511.1|53614_54223_-	recombinase family protein	NA	A0A1W5LU24	Ralstonia_phage	42.9	1.0e-21
