assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003073655.1_ASM307365v1	NZ_CP029082	Staphylococcus aureus strain AR465 chromosome, complete genome	1	20661-20742	1	CRISPRCasFinder	no		cas3,WYL,RT,csa3,DEDDh,DinG	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	1	20685-20718	NZ_CP029082.1_2412992-2412959	NA	1	1	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG	NA,NA|38aa|down_1|NZ_CP029082.1_21725_21839_-	NA|417aa|up_9|NZ_CP029082.1_11088_12339_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP029082.1_12444_13752_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP029082.1_13849_14611_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP029082.1_14938_15790_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP029082.1_16023_16218_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP029082.1_16571_17393_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP029082.1_17410_18106_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP029082.1_18098_19124_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP029082.1_19373_19670_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP029082.1_19662_20049_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP029082.1_20845_21724_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|NZ_CP029082.1_21725_21839_-	NA	NA|127aa|down_2|NZ_CP029082.1_21902_22283_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|NZ_CP029082.1_22440_22797_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|NZ_CP029082.1_22940_23261_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|NZ_CP029082.1_23411_23951_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|NZ_CP029082.1_24033_24750_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|NZ_CP029082.1_24897_25320_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|NZ_CP029082.1_25718_26213_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|NZ_CP029082.1_26367_26985_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCF_003073655.1_ASM307365v1	NZ_CP029082	Staphylococcus aureus strain AR465 chromosome, complete genome	2	69346-69424	2	CRISPRCasFinder	no	cas3	cas3,WYL,RT,csa3,DEDDh,DinG	Unclear	AGAATTTCGAAAAGAAATTCTACA	24	0	0	NA	NA	NA	1	1	Unclear	cas3,WYL,RT,csa3,DEDDh,DinG	NA,NA|36aa|down_5|NZ_CP029082.1_76902_77010_-,NA|35aa|down_7|NZ_CP029082.1_78442_78547_-	NA|301aa|up_9|NZ_CP029082.1_58227_59130_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_8|NZ_CP029082.1_59372_59960_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_7|NZ_CP029082.1_60523_61468_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_6|NZ_CP029082.1_61578_62574_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_5|NZ_CP029082.1_62570_63482_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|up_4|NZ_CP029082.1_64367_65303_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_3|NZ_CP029082.1_65369_66809_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_2|NZ_CP029082.1_66816_67302_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|up_1|NZ_CP029082.1_67309_68149_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_0|NZ_CP029082.1_68154_69087_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_0|NZ_CP029082.1_69750_72597_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_1|NZ_CP029082.1_72604_74590_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_2|NZ_CP029082.1_74858_75095_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_3|NZ_CP029082.1_75091_75742_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_4|NZ_CP029082.1_75915_76755_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|36aa|down_5|NZ_CP029082.1_76902_77010_-	NA	NA|370aa|down_6|NZ_CP029082.1_77163_78274_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|35aa|down_7|NZ_CP029082.1_78442_78547_-	NA	NA|844aa|down_8|NZ_CP029082.1_78588_81120_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_9|NZ_CP029082.1_81533_82106_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]
GCF_003073655.1_ASM307365v1	NZ_CP029082	Staphylococcus aureus strain AR465 chromosome, complete genome	3	463770-463872	3	CRISPRCasFinder	no		cas3,WYL,RT,csa3,DEDDh,DinG	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG	NA|179aa|up_7|NZ_CP029082.1_455388_455925_+,NA|221aa|up_1|NZ_CP029082.1_462016_462679_+,NA|33aa|down_0|NZ_CP029082.1_464547_464646_-,NA|128aa|down_6|NZ_CP029082.1_470893_471277_+,NA|70aa|down_8|NZ_CP029082.1_472101_472311_+	NA|91aa|up_9|NZ_CP029082.1_453621_453894_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|NZ_CP029082.1_454292_454997_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_7|NZ_CP029082.1_455388_455925_+	NA	NA|514aa|up_6|NZ_CP029082.1_456037_457579_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|NZ_CP029082.1_457603_459070_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|NZ_CP029082.1_459107_460376_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|NZ_CP029082.1_460375_460954_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|NZ_CP029082.1_461466_461874_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|NZ_CP029082.1_462016_462679_+	NA	NA|319aa|up_0|NZ_CP029082.1_462796_463753_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|33aa|down_0|NZ_CP029082.1_464547_464646_-	NA	NA|463aa|down_1|NZ_CP029082.1_464730_466119_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_2|NZ_CP029082.1_466198_466954_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_3|NZ_CP029082.1_467445_468015_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_4|NZ_CP029082.1_468030_469554_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|209aa|down_5|NZ_CP029082.1_469997_470624_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_6|NZ_CP029082.1_470893_471277_+	NA	NA|194aa|down_7|NZ_CP029082.1_471342_471924_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|70aa|down_8|NZ_CP029082.1_472101_472311_+	NA	NA|84aa|down_9|NZ_CP029082.1_472349_472601_-	COG2261, COG2261, Predicted membrane protein [Function unknown]
GCF_003073655.1_ASM307365v1	NZ_CP029082	Staphylococcus aureus strain AR465 chromosome, complete genome	4	1128599-1128732	1	PILER-CR	no		cas3,WYL,RT,csa3,DEDDh,DinG	Orphan	TATTGAAGAAGATACAA	17	2	2	1128616-1128661|1128679-1128715	NZ_CP029082.1_1124966-1125011|NZ_CP029082.1_1125029-1125065	NA	2	2	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG	NA|67aa|up_1|NZ_CP029082.1_1122142_1122343_+,NA|78aa|down_5|NZ_CP029082.1_1137049_1137283_+,NA|103aa|down_6|NZ_CP029082.1_1137390_1137699_-,NA|89aa|down_7|NZ_CP029082.1_1137842_1138109_-	NA|426aa|up_9|NZ_CP029082.1_1112139_1113417_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_8|NZ_CP029082.1_1113893_1115717_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_7|NZ_CP029082.1_1115855_1116272_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_6|NZ_CP029082.1_1116502_1117195_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_5|NZ_CP029082.1_1117359_1118124_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_4|NZ_CP029082.1_1118276_1118957_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_3|NZ_CP029082.1_1118980_1120534_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_2|NZ_CP029082.1_1120650_1122009_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|67aa|up_1|NZ_CP029082.1_1122142_1122343_+	NA	NA|1039aa|up_0|NZ_CP029082.1_1122477_1125594_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_0|NZ_CP029082.1_1129340_1130207_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|248aa|down_1|NZ_CP029082.1_1130417_1131161_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|119aa|down_2|NZ_CP029082.1_1131484_1131841_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|1116aa|down_3|NZ_CP029082.1_1132145_1135493_+	pfam18483, Bact_lectin, Bacterial lectin	NA|359aa|down_4|NZ_CP029082.1_1135876_1136953_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|78aa|down_5|NZ_CP029082.1_1137049_1137283_+	NA	NA|103aa|down_6|NZ_CP029082.1_1137390_1137699_-	NA	NA|89aa|down_7|NZ_CP029082.1_1137842_1138109_-	NA	NA|603aa|down_8|NZ_CP029082.1_1138392_1140201_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_9|NZ_CP029082.1_1140332_1140725_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)
GCF_003073655.1_ASM307365v1	NZ_CP029082	Staphylococcus aureus strain AR465 chromosome, complete genome	5	1204146-1204224	4	CRISPRCasFinder	no		cas3,WYL,RT,csa3,DEDDh,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	1	4	1204169-1204201|1204169-1204201|1204169-1204201|1204169-1204201	NZ_CP029082.1_20372-20404|NZ_CP029082.1_56591-56623|NZ_CP029082.1_56647-56679|NZ_CP029082.1_1639097-1639065	NA	1	1	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG	NA|220aa|up_3|NZ_CP029082.1_1201070_1201730_-,NA|36aa|up_0|NZ_CP029082.1_1203719_1203827_+,NA	NA|693aa|up_9|NZ_CP029082.1_1193532_1195611_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|470aa|up_8|NZ_CP029082.1_1195748_1197158_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|269aa|up_7|NZ_CP029082.1_1197443_1198250_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_6|NZ_CP029082.1_1198312_1198969_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_5|NZ_CP029082.1_1199081_1199555_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_4|NZ_CP029082.1_1199677_1200889_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_3|NZ_CP029082.1_1201070_1201730_-	NA	NA|381aa|up_2|NZ_CP029082.1_1201789_1202932_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_CP029082.1_1203199_1203586_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_CP029082.1_1203719_1203827_+	NA	NA|588aa|down_0|NZ_CP029082.1_1204529_1206293_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_CP029082.1_1206317_1208051_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|229aa|down_2|NZ_CP029082.1_1208503_1209190_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_3|NZ_CP029082.1_1209167_1210526_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_4|NZ_CP029082.1_1210527_1211535_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_5|NZ_CP029082.1_1211512_1212628_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_6|NZ_CP029082.1_1212638_1213331_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_7|NZ_CP029082.1_1213341_1213809_+	pfam06177, QueT, QueT transporter	NA|326aa|down_8|NZ_CP029082.1_1213860_1214838_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|down_9|NZ_CP029082.1_1214839_1215787_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family
GCF_003073655.1_ASM307365v1	NZ_CP029082	Staphylococcus aureus strain AR465 chromosome, complete genome	6	1368976-1369056	5	CRISPRCasFinder	no		cas3,WYL,RT,csa3,DEDDh,DinG	Orphan	CAAGTTGGCGGGGCCCCAACACAGA	25	1	13	1369001-1369031|1369001-1369031|1369001-1369031|1369001-1369031|1369001-1369031|1369001-1369031|1369001-1369031|1369001-1369031|1369001-1369031|1369001-1369031|1369001-1369031|1369001-1369031|1369001-1369031	NZ_CP029082.1_56651-56681|NZ_CP029082.1_20376-20406|NZ_CP029082.1_56595-56625|NZ_CP029082.1_235783-235753|NZ_CP029082.1_502609-502579|NZ_CP029082.1_800582-800612|NZ_CP029082.1_1765365-1765395|NZ_CP029082.1_2082726-2082696|NZ_CP029082.1_2324453-2324483|NZ_CP029082.1_2324569-2324599|NZ_CP029082.1_2413033-2413003|NZ_CP029082.1_2619110-2619080|NZ_CP029082.1_2721608-2721638	NA	1	1	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG	NA,NA|62aa|down_0|NZ_CP029082.1_1369097_1369283_-,NA|84aa|down_5|NZ_CP029082.1_1372422_1372674_-,NA|106aa|down_8|NZ_CP029082.1_1377795_1378113_-,NA|55aa|down_9|NZ_CP029082.1_1378357_1378522_-	NA|202aa|up_9|NZ_CP029082.1_1361868_1362474_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP029082.1_1362643_1363648_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP029082.1_1363678_1364185_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP029082.1_1364186_1364681_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP029082.1_1364743_1366003_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP029082.1_1365999_1366485_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP029082.1_1366498_1366945_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP029082.1_1366950_1367184_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP029082.1_1367190_1367790_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP029082.1_1367809_1368832_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|62aa|down_0|NZ_CP029082.1_1369097_1369283_-	NA	NA|117aa|down_1|NZ_CP029082.1_1369408_1369759_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP029082.1_1369860_1371072_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP029082.1_1371064_1371505_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP029082.1_1371666_1372431_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP029082.1_1372422_1372674_-	NA	NA|422aa|down_6|NZ_CP029082.1_1373062_1374328_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP029082.1_1374444_1377612_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP029082.1_1377795_1378113_-	NA	NA|55aa|down_9|NZ_CP029082.1_1378357_1378522_-	NA
GCF_003073655.1_ASM307365v1	NZ_CP029082	Staphylococcus aureus strain AR465 chromosome, complete genome	7	1521499-1521584	6	CRISPRCasFinder	no	csa3	cas3,WYL,RT,csa3,DEDDh,DinG	Type I-A	ACTAATGATACGCAAAAATCAGTTGG	26	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG	NA,NA|53aa|down_6|NZ_CP029082.1_1532548_1532707_-,NA|35aa|down_7|NZ_CP029082.1_1533386_1533491_+,NA|364aa|down_8|NZ_CP029082.1_1533923_1535015_-	NA|396aa|up_9|NZ_CP029082.1_1496743_1497931_+	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	NA|228aa|up_8|NZ_CP029082.1_1497949_1498633_+	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|448aa|up_7|NZ_CP029082.1_1498809_1500153_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|up_6|NZ_CP029082.1_1500251_1500725_+	pfam17080, SepA, Multidrug Resistance efflux pump	NA|481aa|up_5|NZ_CP029082.1_1501047_1502490_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|355aa|up_4|NZ_CP029082.1_1502637_1503702_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|303aa|up_3|NZ_CP029082.1_1509942_1510851_+	cd09989, Arginase, Arginase family	NA|270aa|up_2|NZ_CP029082.1_1511039_1511849_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|311aa|up_1|NZ_CP029082.1_1511850_1512783_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|452aa|up_0|NZ_CP029082.1_1512809_1514165_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|369aa|down_0|NZ_CP029082.1_1522206_1523313_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|down_1|NZ_CP029082.1_1523312_1523747_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|down_2|NZ_CP029082.1_1523758_1525891_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|602aa|down_3|NZ_CP029082.1_1528146_1529952_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|down_4|NZ_CP029082.1_1530183_1530966_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|down_5|NZ_CP029082.1_1531033_1531891_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|down_6|NZ_CP029082.1_1532548_1532707_-	NA	NA|35aa|down_7|NZ_CP029082.1_1533386_1533491_+	NA	NA|364aa|down_8|NZ_CP029082.1_1533923_1535015_-	NA	NA|326aa|down_9|NZ_CP029082.1_1535280_1536258_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
GCF_003073655.1_ASM307365v1	NZ_CP029082	Staphylococcus aureus strain AR465 chromosome, complete genome	8	1533826-1533907	7	CRISPRCasFinder	no	csa3	cas3,WYL,RT,csa3,DEDDh,DinG	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG	NA|53aa|up_1|NZ_CP029082.1_1532548_1532707_-,NA|35aa|up_0|NZ_CP029082.1_1533386_1533491_+,NA|364aa|down_0|NZ_CP029082.1_1533923_1535015_-,NA|77aa|down_5|NZ_CP029082.1_1538801_1539032_+	NA|452aa|up_9|NZ_CP029082.1_1512809_1514165_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|2482aa|up_8|NZ_CP029082.1_1514442_1521888_+	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|369aa|up_7|NZ_CP029082.1_1522206_1523313_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_6|NZ_CP029082.1_1523312_1523747_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_5|NZ_CP029082.1_1523758_1525891_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|602aa|up_4|NZ_CP029082.1_1528146_1529952_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_3|NZ_CP029082.1_1530183_1530966_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_2|NZ_CP029082.1_1531033_1531891_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|up_1|NZ_CP029082.1_1532548_1532707_-	NA	NA|35aa|up_0|NZ_CP029082.1_1533386_1533491_+	NA	NA|364aa|down_0|NZ_CP029082.1_1533923_1535015_-	NA	NA|326aa|down_1|NZ_CP029082.1_1535280_1536258_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP029082.1_1536259_1536580_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP029082.1_1536731_1537397_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP029082.1_1537832_1538771_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP029082.1_1538801_1539032_+	NA	NA|458aa|down_6|NZ_CP029082.1_1539703_1541077_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP029082.1_1541533_1541947_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP029082.1_1542146_1542590_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP029082.1_1542710_1543421_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_003073655.1_ASM307365v1	NZ_CP029082	Staphylococcus aureus strain AR465 chromosome, complete genome	9	1663083-1663164	8	CRISPRCasFinder	no		cas3,WYL,RT,csa3,DEDDh,DinG	Orphan	ACAATGCAAGTTGGGGTGGGGGCC	24	1	5	1663107-1663140|1663107-1663140|1663107-1663140|1663107-1663140|1663107-1663140	NZ_CP029082.1_69392-69425|NZ_CP029082.1_2624711-2624678|NZ_CP029082.1_1970736-1970703|NZ_CP029082.1_930208-930241|NZ_CP029082.1_2408585-2408618	NA	1	1	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG	NA,NA|61aa|down_5|NZ_CP029082.1_1670275_1670458_-	NA|48aa|up_9|NZ_CP029082.1_1653267_1653411_-	smart00794, AgrD, Staphylococcal AgrD protein	NA|188aa|up_8|NZ_CP029082.1_1653413_1653977_-	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|45aa|up_7|NZ_CP029082.1_1654212_1654347_+	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|262aa|up_6|NZ_CP029082.1_1654946_1655732_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|209aa|up_5|NZ_CP029082.1_1656092_1656719_-	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|420aa|up_4|NZ_CP029082.1_1656915_1658175_+	PRK10819, PRK10819, transport protein TonB; Provisional	NA|248aa|up_3|NZ_CP029082.1_1658199_1658943_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|up_2|NZ_CP029082.1_1659117_1659402_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|539aa|up_1|NZ_CP029082.1_1659477_1661094_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|436aa|up_0|NZ_CP029082.1_1661633_1662941_-	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|408aa|down_0|NZ_CP029082.1_1663384_1664608_-	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|352aa|down_1|NZ_CP029082.1_1665043_1666099_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|339aa|down_2|NZ_CP029082.1_1666120_1667137_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|346aa|down_3|NZ_CP029082.1_1668255_1669293_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|238aa|down_4|NZ_CP029082.1_1669483_1670197_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|61aa|down_5|NZ_CP029082.1_1670275_1670458_-	NA	NA|62aa|down_6|NZ_CP029082.1_1670528_1670714_-	pfam00815, Histidinol_dh, Histidinol dehydrogenase	NA|285aa|down_7|NZ_CP029082.1_1670930_1671785_-	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|239aa|down_8|NZ_CP029082.1_1671796_1672513_-	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|81aa|down_9|NZ_CP029082.1_1672676_1672919_+	pfam05339, DUF739, Protein of unknown function (DUF739)
GCF_003073655.1_ASM307365v1	NZ_CP029082	Staphylococcus aureus strain AR465 chromosome, complete genome	10	2097306-2097390	9	CRISPRCasFinder	no		cas3,WYL,RT,csa3,DEDDh,DinG	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	2	2097332-2097364|2097332-2097364	NZ_CP029082.1_63834-63866|NZ_CP029082.1_2412991-2412959	NA	1	1	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG	NA,NA	NA|190aa|up_9|NZ_CP029082.1_2087935_2088505_+	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase	NA|195aa|up_8|NZ_CP029082.1_2088494_2089079_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|118aa|up_7|NZ_CP029082.1_2089079_2089433_+	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|239aa|up_6|NZ_CP029082.1_2089435_2090152_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|229aa|up_5|NZ_CP029082.1_2090191_2090878_+	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|154aa|up_4|NZ_CP029082.1_2090969_2091431_+	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|716aa|up_3|NZ_CP029082.1_2091489_2093637_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|325aa|up_2|NZ_CP029082.1_2093693_2094668_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|84aa|up_1|NZ_CP029082.1_2094712_2094964_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|608aa|up_0|NZ_CP029082.1_2095309_2097133_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|375aa|down_0|NZ_CP029082.1_2097698_2098823_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|326aa|down_1|NZ_CP029082.1_2098923_2099901_+	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|209aa|down_2|NZ_CP029082.1_2099932_2100559_+	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|611aa|down_3|NZ_CP029082.1_2100627_2102460_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|380aa|down_4|NZ_CP029082.1_2102595_2103735_+	PRK14280, PRK14280, molecular chaperone DnaJ	NA|313aa|down_5|NZ_CP029082.1_2103738_2104677_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|251aa|down_6|NZ_CP029082.1_2104678_2105431_+	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|449aa|down_7|NZ_CP029082.1_2105437_2106784_+	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|59aa|down_8|NZ_CP029082.1_2107076_2107253_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|228aa|down_9|NZ_CP029082.1_2107496_2108180_+	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
