The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP015642	Staphylococcus simulans strain MR1 chromosome, complete genome	2661512	995105	1037831	2661512	tail,head,tRNA,transposase,capsid,protease,integrase	Staphylococcus_phage(26.32%)	42	1027801:1027818	1041775:1041792
WP_105967014.1|995105_996422_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	30.8	9.2e-44
WP_105967013.1|996606_997875_-	threonine ammonia-lyase IlvA	NA	NA	NA	NA	NA
WP_002481742.1|997887_998469_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_002481741.1|998461_999844_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_105967012.1|999859_1000900_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_002481739.1|1000896_1002429_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	27.0	2.7e-10
WP_002481738.1|1002454_1003459_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_002481737.1|1003517_1003991_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_002481736.1|1003987_1005730_-	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	31.9	4.4e-70
WP_105967011.1|1005736_1007431_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_023015916.1|1007891_1008365_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_105967010.1|1008333_1008999_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	A0A0R6PI74	Moraxella_phage	38.5	7.2e-05
WP_070848577.1|1008974_1009439_+	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_023015914.1|1009438_1010464_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	41.2	1.9e-60
WP_105967009.1|1010521_1012117_-	MutS family DNA mismatch repair protein	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	26.5	1.8e-17
WP_105967008.1|1012456_1014382_-	ABC-F type ribosomal protection protein	NA	A0A2H4UUX5	Bodo_saltans_virus	29.4	9.3e-53
WP_002481727.1|1014946_1015588_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_002481726.1|1015638_1015863_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_070463416.1|1015918_1017007_-	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_105967007.1|1017242_1018727_+	sucrose-6-phosphate hydrolase	NA	NA	NA	NA	NA
WP_002481723.1|1018801_1019518_-	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	34.3	6.1e-26
WP_105967006.1|1019520_1020822_-	GHKL domain-containing protein	NA	NA	NA	NA	NA
WP_023015908.1|1020861_1020999_-	cyclic lactone autoinducer peptide	NA	NA	NA	NA	NA
WP_002481720.1|1020998_1021577_-	accessory gene regulator AgrB	NA	NA	NA	NA	NA
WP_158256887.1|1021888_1022053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_105967004.1|1022357_1023158_-	carbon-nitrogen family hydrolase	NA	NA	NA	NA	NA
WP_105967003.1|1023378_1024827_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070626462.1|1024915_1025659_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002481716.1|1025875_1026160_+	co-chaperone GroES	NA	A0A221S4A8	uncultured_virus	35.9	1.8e-13
WP_002481715.1|1026198_1027818_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	53.0	3.8e-156
1027801:1027818	attL	ATGCCAGGCATGATGTAA	NA	NA	NA	NA
WP_105977845.1|1027881_1029057_-|integrase	site-specific integrase	integrase	A0A1W6JPB2	Staphylococcus_phage	66.9	1.0e-150
WP_106420982.1|1029066_1029648_-	helix-turn-helix transcriptional regulator	NA	A0A0A8WFJ2	Clostridium_phage	37.1	2.3e-07
WP_106420983.1|1029741_1029960_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_106420984.1|1029963_1030269_+	helix-turn-helix domain-containing protein	NA	A0A1W6JPE8	Staphylococcus_phage	76.5	1.1e-35
WP_106420985.1|1030270_1030474_+	pathogenicity island protein	NA	A0A1W6JQF4	Staphylococcus_phage	68.7	7.5e-22
WP_106420986.1|1030476_1030899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_106420987.1|1030898_1031198_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	50.5	9.4e-21
WP_106420988.1|1031300_1033640_+	DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	41.9	6.0e-139
WP_106420989.1|1034023_1034290_+	hypothetical protein	NA	H9A0M1	Staphylococcus_phage	42.5	1.8e-07
WP_106420990.1|1035685_1036252_+|head,protease	HK97 family phage prohead protease	head,protease	Q8SBP9	Clostridium_phage	32.2	5.2e-12
WP_106420991.1|1036253_1037486_+|capsid	phage major capsid protein	capsid	NA	NA	NA	NA
WP_106420992.1|1037549_1037831_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A0S2GLH6	Bacillus_phage	31.6	3.0e-05
1041775:1041792	attR	ATGCCAGGCATGATGTAA	NA	NA	NA	NA
>prophage 2
NZ_CP015642	Staphylococcus simulans strain MR1 chromosome, complete genome	2661512	1167127	1202981	2661512	tRNA,transposase	Staphylococcus_phage(89.29%)	36	NA	NA
WP_105966656.1|1167127_1169170_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	30.3	1.1e-67
WP_103364072.1|1169430_1169922_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421001.1|1170122_1170815_+	hypothetical protein	NA	NA	NA	NA	NA
WP_105966654.1|1170930_1172319_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	57.3	5.9e-158
WP_105966653.1|1172321_1173332_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	53.7	5.5e-97
WP_023016239.1|1173322_1173580_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	75.7	4.7e-29
WP_023016238.1|1173657_1174149_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	49.7	4.9e-35
WP_057509771.1|1174114_1174888_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	66.5	1.3e-93
WP_105966652.1|1174940_1176533_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	81.4	6.8e-259
WP_070848406.1|1176920_1178117_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	81.6	3.0e-187
WP_002481255.1|1178213_1179113_+	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	75.4	4.0e-99
WP_105966651.1|1179234_1180071_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	63.8	4.2e-103
WP_002481253.1|1180122_1180476_-	CrcB family protein	NA	NA	NA	NA	NA
WP_002481252.1|1180468_1180840_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	64.5	6.1e-38
WP_002481251.1|1180900_1181209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002481250.1|1181396_1182113_+	transaldolase	NA	M1PR54	Cyanophage	35.0	3.8e-20
WP_105976125.1|1182253_1182715_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	40.9	1.4e-18
WP_060804831.1|1182689_1183130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023016001.1|1183129_1183627_-	hypothetical protein	NA	A0A2H4PQT5	Staphylococcus_phage	42.5	1.1e-21
WP_023016000.1|1183831_1184053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_105967157.1|1184226_1185543_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	31.0	1.4e-44
WP_002481245.1|1185939_1186785_+	hypothetical protein	NA	A0A1W6JNR1	Staphylococcus_phage	41.7	4.2e-42
WP_105966649.1|1186926_1188408_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	64.5	1.0e-14
WP_105977717.1|1188802_1189852_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	59.9	4.1e-119
WP_057509781.1|1189856_1190489_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	61.4	2.8e-67
WP_105966647.1|1190504_1191686_+	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	73.5	1.8e-168
WP_070626312.1|1191718_1192180_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	75.2	3.9e-58
WP_023015993.1|1192253_1193249_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	63.3	5.8e-115
WP_002481238.1|1193510_1194341_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_002481237.1|1194517_1195474_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_105966646.1|1195539_1196097_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	61.6	3.5e-61
WP_105966645.1|1196093_1197056_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	83.7	4.3e-67
WP_002481234.1|1197328_1198507_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	73.2	3.0e-163
WP_105966644.1|1198886_1201301_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	85.0	0.0e+00
WP_002481231.1|1201321_1201639_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	66.7	1.5e-32
WP_023015991.1|1201724_1202981_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	75.0	2.6e-40
>prophage 3
NZ_CP015642	Staphylococcus simulans strain MR1 chromosome, complete genome	2661512	1325485	1335559	2661512	tRNA	Klosneuvirus(33.33%)	7	NA	NA
WP_106421008.1|1325485_1327759_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.9	4.6e-75
WP_023016066.1|1327777_1328296_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	44.4	8.1e-28
WP_002481117.1|1328647_1330837_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	38.0	9.0e-12
WP_002481116.1|1330852_1331305_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_002481115.1|1331301_1332177_+	hypothetical protein	NA	A0A0N9SGH1	Paenibacillus_phage	33.1	6.8e-11
WP_105966607.1|1332502_1333777_+|tRNA	histidine--tRNA ligase	tRNA	A0A2K9L6G5	Tupanvirus	23.8	2.3e-15
WP_105966606.1|1333792_1335559_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SIS0	Klosneuvirus	33.7	9.2e-07
>prophage 4
NZ_CP015642	Staphylococcus simulans strain MR1 chromosome, complete genome	2661512	1620735	1661492	2661512	tail,head,terminase,portal,capsid,integrase	Staphylococcus_phage(39.13%)	62	1621546:1621568	1661528:1661550
WP_002480822.1|1620735_1621209_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	40.5	1.1e-26
1621546:1621568	attL	ATGATTTTTGCCTTGTGAGAATA	NA	NA	NA	NA
WP_106421026.1|1622034_1622457_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421027.1|1622456_1623014_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0U4JD08	Gordonia_phage	32.2	1.2e-05
WP_105976117.1|1623430_1623631_-	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	87.9	1.9e-25
WP_105976116.1|1623617_1623728_-	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	86.1	3.9e-09
WP_105976115.1|1623801_1623930_-	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	92.9	4.7e-14
WP_105976114.1|1624323_1624866_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105976113.1|1625575_1627048_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A2H4JAU4	uncultured_Caudovirales_phage	71.8	2.6e-220
WP_105976112.1|1627048_1627297_-	PTS mannose transporter subunit IID	NA	Q4ZD59	Staphylococcus_phage	87.8	2.2e-36
WP_106421028.1|1627436_1627736_-	DUF2951 family protein	NA	Q4ZD60	Staphylococcus_phage	80.2	6.3e-33
WP_105976111.1|1627792_1628071_-	hypothetical protein	NA	A0A2H4J771	uncultured_Caudovirales_phage	63.2	7.6e-17
WP_105976110.1|1628076_1629945_-	hypothetical protein	NA	A0A2H4JCH3	uncultured_Caudovirales_phage	45.8	4.6e-150
WP_106421029.1|1629961_1631614_-	hypothetical protein	NA	A0A2P1JUJ3	Bacillus_phage	36.3	4.7e-45
WP_106421030.1|1631624_1632554_-	hypothetical protein	NA	A0A2H4J5C4	uncultured_Caudovirales_phage	59.6	4.3e-48
WP_106421031.1|1632557_1636331_-|tail	phage tail protein	tail	H9A0P1	Staphylococcus_phage	65.0	9.8e-115
WP_106421032.1|1636353_1636668_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421033.1|1636700_1637159_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421034.1|1637226_1637784_-|tail	phage tail protein	tail	A0A1W6JQQ8	Staphylococcus_phage	33.5	5.1e-20
WP_106421035.1|1637797_1638268_-	hypothetical protein	NA	A0A2H4PQL6	Staphylococcus_phage	31.8	3.5e-14
WP_106421036.1|1638282_1638666_-	HK97 gp10 family phage protein	NA	M9NRJ3	Staphylococcus_phage	46.3	4.7e-25
WP_106421037.1|1638669_1638993_-|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_105976100.1|1638982_1639303_-|head,tail	phage head-tail adapter protein	head,tail	NA	NA	NA	NA
WP_105976099.1|1639499_1640459_-|capsid	phage capsid protein	capsid	A0A097PAW2	Streptococcus_pyogenes_phage	53.4	1.1e-35
WP_105976098.1|1640473_1641043_-	hypothetical protein	NA	I6SB44	Staphylococcus_virus	45.2	5.6e-22
WP_158257427.1|1641146_1642124_-|head	phage head morphogenesis protein	head	Q4ZC73	Staphylococcus_virus	42.0	9.5e-62
WP_142397735.1|1642101_1643454_-|portal	phage portal protein	portal	A0A1W6JQP9	Staphylococcus_phage	49.8	7.3e-121
WP_106421040.1|1643498_1644770_-|terminase	PBSX family phage terminase large subunit	terminase	Q4ZCF2	Staphylococcus_virus	93.1	2.4e-230
WP_002480794.1|1644769_1645147_-	hypothetical protein	NA	A0A1W6JP86	Staphylococcus_phage	64.0	6.7e-40
WP_106421041.1|1645225_1645771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_070548334.1|1645967_1646393_-	transcriptional regulator	NA	A0A1J0MFW0	Staphylococcus_phage	80.9	2.3e-57
WP_106421042.1|1646519_1646696_-	transcriptional regulator	NA	Q4ZC79	Staphylococcus_virus	87.9	2.1e-20
WP_106421043.1|1646698_1646995_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421044.1|1647539_1647767_-	hypothetical protein	NA	Q4ZC83	Staphylococcus_virus	71.6	3.6e-17
WP_106421045.1|1647763_1648024_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158263702.1|1648304_1648481_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105976084.1|1648481_1648901_-	DUF3310 domain-containing protein	NA	Q4ZC89	Staphylococcus_virus	60.0	7.7e-21
WP_106421046.1|1648901_1649417_-	hypothetical protein	NA	Q4ZC91	Staphylococcus_virus	30.8	3.6e-12
WP_105980080.1|1649429_1649621_-	hypothetical protein	NA	Q4ZC92	Staphylococcus_virus	98.4	6.6e-28
WP_106421047.1|1649621_1650029_-	RusA family crossover junction endodeoxyribonuclease	NA	Q4ZC94	Staphylococcus_virus	91.9	6.9e-67
WP_060804512.1|1650194_1650968_-	ATP-binding protein	NA	A0A1W6JP70	Staphylococcus_phage	79.2	6.0e-104
WP_106421049.1|1650980_1651718_-	replication protein	NA	Q4ZDQ6	Staphylococcus_virus	65.4	9.0e-65
WP_106421050.1|1651763_1652246_+	hypothetical protein	NA	A0A2H4JC39	uncultured_Caudovirales_phage	61.9	9.4e-47
WP_106421051.1|1652261_1652933_-	hypothetical protein	NA	Q4ZC99	Staphylococcus_virus	86.0	4.7e-113
WP_106421052.1|1652945_1653392_-	single-stranded DNA-binding protein	NA	A0A1J0MFD7	Staphylococcus_phage	90.2	3.1e-52
WP_106421053.1|1653391_1654063_-	single-stranded DNA-binding protein	NA	A0A1J0MF78	Staphylococcus_phage	89.5	8.4e-110
WP_106421054.1|1654025_1654280_-	DUF2483 domain-containing protein	NA	Q4ZCA2	Staphylococcus_virus	96.4	6.1e-37
WP_106421055.1|1654272_1654497_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421056.1|1654596_1654812_-	hypothetical protein	NA	Q4ZCA4	Staphylococcus_virus	90.1	3.3e-28
WP_002480770.1|1654824_1655127_-	DUF771 domain-containing protein	NA	Q4ZCA6	Staphylococcus_virus	98.0	6.7e-51
WP_106421057.1|1655241_1655565_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159079669.1|1655553_1655712_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421058.1|1655758_1655986_-	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	71.6	2.0e-23
WP_106421059.1|1655986_1656760_-	phage antirepressor KilAC domain-containing protein	NA	Q4ZCB0	Staphylococcus_virus	99.2	1.5e-142
WP_105976070.1|1656875_1657112_+	hypothetical protein	NA	Q4ZBN3	Staphylococcus_phage	84.6	6.0e-31
WP_106421060.1|1657280_1657520_-	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.9	3.9e-38
WP_105996454.1|1657712_1658045_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JC44	uncultured_Caudovirales_phage	94.5	1.0e-47
WP_106421061.1|1658058_1658532_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4J4F2	uncultured_Caudovirales_phage	65.4	1.1e-55
WP_105976065.1|1658518_1659160_+	DUF4352 domain-containing protein	NA	NA	NA	NA	NA
WP_158257428.1|1659338_1659479_+	hypothetical protein	NA	NA	NA	NA	NA
WP_106421062.1|1659573_1660089_+	hypothetical protein	NA	A0A0H3U494	Staphylococcus_phage	48.0	3.5e-39
WP_106421063.1|1660090_1660399_+	hypothetical protein	NA	NA	NA	NA	NA
WP_106421064.1|1660463_1661492_+|integrase	site-specific integrase	integrase	Q4ZCC1	Staphylococcus_virus	98.8	5.1e-191
1661528:1661550	attR	ATGATTTTTGCCTTGTGAGAATA	NA	NA	NA	NA
>prophage 5
NZ_CP015642	Staphylococcus simulans strain MR1 chromosome, complete genome	2661512	1934125	1942547	2661512		Prochlorococcus_phage(33.33%)	9	NA	NA
WP_023015953.1|1934125_1934692_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.3	2.6e-32
WP_060803898.1|1934688_1935729_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.1	1.6e-70
WP_002480500.1|1935733_1937155_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	30.8	5.6e-47
WP_002480499.1|1937133_1939323_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.4	7.4e-139
WP_070626693.1|1939315_1939987_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_002480497.1|1939986_1940247_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002480496.1|1940246_1940951_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	42.9	1.1e-48
WP_002480495.1|1940950_1942078_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_002480494.1|1942064_1942547_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	4.7e-22
>prophage 6
NZ_CP015642	Staphylococcus simulans strain MR1 chromosome, complete genome	2661512	2183606	2196849	2661512	tail,head,terminase,portal,capsid,protease,integrase	Staphylococcus_phage(46.15%)	19	2191477:2191491	2196312:2196326
WP_105977691.1|2183606_2183915_-|head	phage head closure protein	head	NA	NA	NA	NA
WP_105977690.1|2184094_2185738_-|terminase	terminase large subunit	terminase	A0A290GJW3	Caldibacillus_phage	50.8	1.0e-156
WP_106421088.1|2185730_2186051_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105977689.1|2186185_2186479_-	HNH endonuclease	NA	R9TNN2	Paenibacillus_phage	43.8	7.3e-18
WP_060804152.1|2186471_2186753_-|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_096754297.1|2186818_2188051_-|capsid	phage major capsid protein	capsid	NA	NA	NA	NA
WP_105977688.1|2188052_2188619_-|head,protease	HK97 family phage prohead protease	head,protease	Q8SBP9	Clostridium_phage	33.8	2.3e-12
WP_105977695.1|2188605_2189745_-|portal	phage portal protein	portal	A0A1L2BY94	Clostridium_phage	36.0	3.3e-58
WP_106421089.1|2190011_2190353_-	pathogenicity island protein	NA	A0A1W6JQD5	Staphylococcus_phage	70.5	2.2e-42
WP_105977686.1|2190601_2192101_-	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	73.5	3.0e-216
2191477:2191491	attL	TTTGGTTATACCATT	NA	NA	NA	NA
WP_158256891.1|2192097_2193000_-	mobile element-associated protein	NA	A0A1W6JQL5	Staphylococcus_phage	42.6	2.9e-57
WP_105977684.1|2193061_2193337_-	DUF1474 family protein	NA	A0A1W6JPG5	Staphylococcus_phage	51.6	4.0e-18
WP_105977683.1|2193336_2193630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105977682.1|2193632_2193836_-	pathogenicity island protein	NA	A0A2H4JD47	uncultured_Caudovirales_phage	74.6	1.1e-20
WP_105977681.1|2193852_2194098_-	DUF771 domain-containing protein	NA	NA	NA	NA	NA
WP_105977680.1|2194101_2194320_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	54.2	2.3e-13
WP_105977679.1|2194482_2195184_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JH10	uncultured_Caudovirales_phage	51.7	3.2e-51
WP_105977678.1|2195203_2196262_+|integrase	site-specific integrase	integrase	A0A1W6JQE7	Staphylococcus_phage	42.7	1.7e-64
WP_105966443.1|2196597_2196849_-	hypothetical protein	NA	C8CH40	Staphylococcus_phage	50.6	2.8e-18
2196312:2196326	attR	AATGGTATAACCAAA	NA	NA	NA	NA
>prophage 7
NZ_CP015642	Staphylococcus simulans strain MR1 chromosome, complete genome	2661512	2240647	2253127	2661512		uncultured_Caudovirales_phage(50.0%)	10	NA	NA
WP_031262609.1|2240647_2241616_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.4	7.8e-133
WP_002481524.1|2241921_2242896_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	90.7	2.1e-170
WP_023015386.1|2243008_2245114_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	88.2	0.0e+00
WP_023015387.1|2245076_2245478_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	65.4	1.8e-43
WP_002481521.1|2246362_2247250_+	DMT family transporter	NA	NA	NA	NA	NA
WP_105977676.1|2247252_2247756_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.1	6.6e-51
WP_002481519.1|2247938_2249462_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	37.7	7.1e-72
WP_002481518.1|2249756_2251259_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.3	3.0e-67
WP_002481517.1|2251384_2251921_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_002481516.1|2252062_2253127_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.2	2.2e-19
>prophage 1
NZ_CP015643	Staphylococcus simulans strain MR1 plasmid unnamed1, complete sequence	87667	13375	54946	87667	transposase	Staphylococcus_phage(64.71%)	43	NA	NA
WP_106421215.1|13375_14050_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	95.1	3.9e-123
WP_106421216.1|14194_15139_+	hypothetical protein	NA	NA	NA	NA	NA
WP_103370613.1|15286_15961_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	96.9	7.1e-125
WP_106421263.1|16008_16434_+	protein rep	NA	NA	NA	NA	NA
WP_000700648.1|17120_17606_-	lincosamide nucleotidyltransferase Lnu(A)	NA	A0A2K5B286	Erysipelothrix_phage	31.2	2.8e-14
WP_103370613.1|18446_19121_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	96.9	7.1e-125
WP_106421217.1|19155_19506_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421264.1|19555_19828_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421218.1|20258_21050_+	ParA family protein	NA	A0A0K2FLP4	Brevibacillus_phage	27.2	3.6e-19
WP_106421219.1|21055_21376_+	hypothetical protein	NA	NA	NA	NA	NA
WP_106421220.1|21653_22058_-	DUF4064 domain-containing protein	NA	NA	NA	NA	NA
WP_106421221.1|22183_23071_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	37.9	1.1e-40
WP_106421222.1|23085_24081_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_106421223.1|24153_25428_-	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	30.7	7.0e-49
WP_106421224.1|25424_26357_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421225.1|26477_27011_+	SdpA family antimicrobial peptide system protein	NA	NA	NA	NA	NA
WP_106421226.1|27007_27919_+	hypothetical protein	NA	NA	NA	NA	NA
WP_106421227.1|27918_28524_+	sporulation delaying protein family toxin	NA	NA	NA	NA	NA
WP_106421228.1|28526_28913_+	DUF393 domain-containing protein	NA	NA	NA	NA	NA
WP_106421229.1|28953_29595_-	SdpI family protein	NA	NA	NA	NA	NA
WP_106421230.1|29613_29865_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_106421232.1|32331_32589_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_106421233.1|32588_32855_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_103370613.1|33461_34136_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	96.9	7.1e-125
WP_106421234.1|34145_34991_-	protein rep	NA	NA	NA	NA	NA
WP_105988897.1|35529_36075_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421236.1|37171_37315_-	Rep protein	NA	NA	NA	NA	NA
WP_103370613.1|37346_38021_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	96.9	7.1e-125
WP_106421237.1|38055_38877_-	protein rep	NA	NA	NA	NA	NA
WP_106421238.1|39326_39893_+	hypothetical protein	NA	NA	NA	NA	NA
WP_106421239.1|41043_41934_-	protein rep	NA	NA	NA	NA	NA
WP_106421240.1|41965_42640_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.2	1.7e-126
WP_106421242.1|43357_43738_+	hypothetical protein	NA	NA	NA	NA	NA
WP_106421243.1|43879_45214_-|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	47.2	8.0e-112
WP_106421244.1|45933_46608_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	94.2	1.6e-121
WP_023016133.1|46831_47032_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	61.9	2.5e-17
WP_106421450.1|47462_48656_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_106421245.1|49590_50265_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	95.1	6.6e-123
WP_106421246.1|50614_51172_+	hypothetical protein	NA	A0A0N9SJ02	Staphylococcus_phage	50.8	4.3e-27
WP_106421247.1|51789_52398_+	recombinase family protein	NA	G8I4U3	Mycobacterium_phage	30.2	5.0e-13
WP_106421248.1|52580_52808_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159079677.1|53067_53223_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106421249.1|53242_54946_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	35.9	2.3e-79
