assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003112145.1_ASM311214v1	NZ_CP028110	Escherichia coli O121 str. RM8352 chromosome, complete genome	1	2956347-2956464	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,PD-DExK,PrimPol,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,PD-DExK,PrimPol,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|55aa|down_0|NZ_CP028110.1_2956537_2956702_-	NA|115aa|up_9|NZ_CP028110.1_2944068_2944413_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP028110.1_2944601_2945540_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP028110.1_2945638_2946628_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP028110.1_2946649_2947981_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP028110.1_2948006_2949215_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP028110.1_2949248_2951543_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP028110.1_2951556_2951946_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP028110.1_2952017_2953382_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP028110.1_2953656_2954988_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP028110.1_2955015_2956326_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP028110.1_2956537_2956702_-	NA	NA|234aa|down_1|NZ_CP028110.1_2956724_2957426_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP028110.1_2957530_2958427_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP028110.1_2958477_2958834_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP028110.1_2959075_2959441_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP028110.1_2959733_2960720_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_CP028110.1_2960789_2961272_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP028110.1_2961368_2961668_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP028110.1_2961657_2962062_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP028110.1_2962064_2962370_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_003112145.1_ASM311214v1	NZ_CP028110	Escherichia coli O121 str. RM8352 chromosome, complete genome	2	3459741-3460074	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,PD-DExK,PrimPol,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,PD-DExK,PrimPol,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|47aa|up_1|NZ_CP028110.1_3458450_3458591_-,NA	NA|919aa|up_9|NZ_CP028110.1_3446333_3449090_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP028110.1_3449146_3450448_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP028110.1_3450495_3452730_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP028110.1_3452807_3453056_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP028110.1_3453055_3453391_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP028110.1_3453461_3454253_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP028110.1_3454480_3456118_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP028110.1_3456205_3457504_+	PRK00077, eno, enolase; Provisional	NA|47aa|up_1|NZ_CP028110.1_3458450_3458591_-	NA	NA|224aa|up_0|NZ_CP028110.1_3458729_3459401_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP028110.1_3460712_3462191_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP028110.1_3462217_3463495_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP028110.1_3463813_3464599_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP028110.1_3464668_3466123_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP028110.1_3466216_3467554_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP028110.1_3467531_3468311_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP028110.1_3468307_3469168_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP028110.1_3469315_3469891_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP028110.1_3469907_3470168_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP028110.1_3470158_3471430_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_003112145.1_ASM311214v1	NZ_CP028110	Escherichia coli O121 str. RM8352 chromosome, complete genome	3	3487087-3487360	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	DEDDh,DinG,cas3,c2c9_V-U4,csa3,PD-DExK,PrimPol,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCGC,GTGTTCCCCGCGCCAGCGGGGATAAACCGC,GTGTTCCCCGCGCCAGCGGGGATAAACCGC	30,30,30	0	0	NA	NA	I-E:I-E:I-E	4,4,4	4	TypeI-E	DEDDh,DinG,cas3,c2c9_V-U4,csa3,PD-DExK,PrimPol,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|245aa|up_9|NZ_CP028110.1_3475773_3476508_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP028110.1_3476772_3476925_+	pfam01848, HOK_GEF, Hok/gef family	NA|405aa|up_7|NZ_CP028110.1_3479318_3480532_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas8e|521aa|up_6|NZ_CP028110.1_3481228_3482791_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP028110.1_3482787_3483324_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|NZ_CP028110.1_3483335_3484391_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP028110.1_3484401_3485148_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP028110.1_3485129_3485780_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP028110.1_3485776_3486697_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP028110.1_3486696_3486990_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP028110.1_3487440_3488478_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP028110.1_3488729_3489638_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP028110.1_3489639_3491067_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP028110.1_3491066_3491672_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP028110.1_3491721_3492045_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP028110.1_3492238_3492550_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP028110.1_3492568_3493279_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP028110.1_3493278_3493758_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP028110.1_3493754_3494804_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP028110.1_3494784_3495546_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_003112145.1_ASM311214v1	NZ_CP028110	Escherichia coli O121 str. RM8352 chromosome, complete genome	4	3835919-3836071	4	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,PD-DExK,PrimPol,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GCCTACGGGATTGCACATGTAGGGCGGATAAGGCGTTCACGCCGCATCCGCCA	53	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,PD-DExK,PrimPol,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|112aa|up_9|NZ_CP028110.1_3828409_3828745_+	PRK15468, PRK15468, ethanolamine utilization microcompartment protein EutS	NA|160aa|up_8|NZ_CP028110.1_3828757_3829237_+	PRK15467, PRK15467, ethanolamine utilization acetate kinase EutP	NA|234aa|up_7|NZ_CP028110.1_3829211_3829913_+	PRK15457, PRK15457, ethanolamine utilization acetate kinase EutQ	NA|266aa|up_6|NZ_CP028110.1_3829909_3830707_+	PRK15020, PRK15020, ethanolamine utilization cob(I)yrinic acid a,c-diamide adenosyltransferase EutT	NA|339aa|up_5|NZ_CP028110.1_3830703_3831720_+	PRK09653, eutD, phosphotransacetylase	NA|98aa|up_4|NZ_CP028110.1_3831758_3832052_+	PRK15474, PRK15474, ethanolamine utilization microcompartment protein EutM	NA|96aa|up_3|NZ_CP028110.1_3832158_3832446_+	PRK15448, PRK15448, ethanolamine utilization microcompartment protein EutN	NA|468aa|up_2|NZ_CP028110.1_3832457_3833861_+	PRK15398, PRK15398, aldehyde dehydrogenase	NA|279aa|up_1|NZ_CP028110.1_3833871_3834708_+	COG4820, EutJ, Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]	NA|396aa|up_0|NZ_CP028110.1_3834697_3835885_+	PRK15454, PRK15454, ethanolamine utilization ethanol dehydrogenase EutG	NA|409aa|down_0|NZ_CP028110.1_3836101_3837328_+	COG3192, EutH, Ethanolamine utilization protein [Amino acid transport and metabolism]	NA|468aa|down_1|NZ_CP028110.1_3837324_3838728_+	PRK10719, eutA, ethanolamine ammonia-lyase reactivating factor EutA	NA|454aa|down_2|NZ_CP028110.1_3838739_3840101_+	COG4303, EutB, Ethanolamine ammonia-lyase, large subunit [Amino acid transport and metabolism]	NA|296aa|down_3|NZ_CP028110.1_3840121_3841009_+	COG4302, EutC, Ethanolamine ammonia-lyase, small subunit [Amino acid transport and metabolism]	NA|220aa|down_4|NZ_CP028110.1_3841018_3841678_+	PRK15405, PRK15405, ethanolamine utilization microcompartment protein EutL	NA|167aa|down_5|NZ_CP028110.1_3841690_3842191_+	PRK15466, PRK15466, ethanolamine utilization microcompartment protein EutK	NA|351aa|down_6|NZ_CP028110.1_3842236_3843289_+	PRK10130, PRK10130, HTH-type transcriptional regulator EutR	NA|300aa|down_7|NZ_CP028110.1_3843294_3844194_-	PRK05330, PRK05330, oxygen-dependent coproporphyrinogen oxidase	NA|290aa|down_8|NZ_CP028110.1_3844197_3845067_-	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA	NA|142aa|down_9|NZ_CP028110.1_3845280_3845706_+	PRK03624, PRK03624, putative acetyltransferase; Provisional
GCF_003112145.1_ASM311214v1	NZ_CP028110	Escherichia coli O121 str. RM8352 chromosome, complete genome	5	4761216-4761339	5	CRISPRCasFinder	no	DEDDh	DEDDh,DinG,cas3,c2c9_V-U4,csa3,PD-DExK,PrimPol,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,PD-DExK,PrimPol,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|30aa|down_7|NZ_CP028110.1_4770235_4770325_+	NA|79aa|up_9|NZ_CP028110.1_4750123_4750360_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_8|NZ_CP028110.1_4750670_4752083_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_7|NZ_CP028110.1_4752639_4752849_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_6|NZ_CP028110.1_4753303_4753930_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_5|NZ_CP028110.1_4753950_4756053_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_4|NZ_CP028110.1_4756056_4756704_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_3|NZ_CP028110.1_4756767_4757436_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_2|NZ_CP028110.1_4757432_4758218_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_1|NZ_CP028110.1_4758221_4759034_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|102aa|up_0|NZ_CP028110.1_4760775_4761081_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP028110.1_4761653_4762910_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP028110.1_4762950_4764324_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP028110.1_4764538_4765180_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP028110.1_4765219_4766368_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP028110.1_4766658_4767870_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP028110.1_4767982_4768915_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP028110.1_4768911_4769937_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP028110.1_4770235_4770325_+	NA	NA|390aa|down_8|NZ_CP028110.1_4770490_4771660_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP028110.1_4771805_4772387_-	PRK10543, PRK10543, superoxide dismutase [Fe]
