assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003176855.1_ASM317685v1	NZ_CP028381	Escherichia coli strain RM10466 chromosome, complete genome	1	566116-566212	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|485aa|up_9|NZ_CP028381.1_552483_553938_+	PRK11375, PRK11375, putative allantoin permease	NA|454aa|up_8|NZ_CP028381.1_553997_555359_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_7|NZ_CP028381.1_555415_556717_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|262aa|up_6|NZ_CP028381.1_558011_558797_-	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|412aa|up_5|NZ_CP028381.1_558807_560043_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP028381.1_560064_561114_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP028381.1_561429_563097_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP028381.1_563106_564366_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP028381.1_564376_565192_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP028381.1_565188_566082_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP028381.1_566276_567344_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP028381.1_567340_567850_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP028381.1_567967_568690_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP028381.1_568692_569187_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP028381.1_569360_570746_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP028381.1_570781_571303_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP028381.1_571410_571623_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP028381.1_571624_572491_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP028381.1_572971_573514_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP028381.1_573733_574426_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_003176855.1_ASM317685v1	NZ_CP028381	Escherichia coli strain RM10466 chromosome, complete genome	2	1195851-1195942	2	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GCATCAGAAGCAGGTAAAAAAGGTGG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|70aa|down_9|NZ_CP028381.1_1206481_1206691_+	NA|231aa|up_9|NZ_CP028381.1_1185041_1185734_-	PRK10766, PRK10766, two-component system response regulator TorR	NA|391aa|up_8|NZ_CP028381.1_1185863_1187036_+	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|849aa|up_7|NZ_CP028381.1_1187035_1189582_+	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|200aa|up_6|NZ_CP028381.1_1189578_1190178_+	PRK04976, torD, chaperone protein TorD; Validated	NA|102aa|up_5|NZ_CP028381.1_1190270_1190576_-	PRK10265, PRK10265, chaperone modulator CbpM	NA|307aa|up_4|NZ_CP028381.1_1190575_1191496_-	PRK10266, PRK10266, curved DNA-binding protein	NA|420aa|up_3|NZ_CP028381.1_1191755_1193015_+	PRK09784, PRK09784, YccE family protein	NA|414aa|up_2|NZ_CP028381.1_1193303_1194545_+	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|76aa|up_1|NZ_CP028381.1_1194582_1194810_-	PRK10174, PRK10174, hypothetical protein; Provisional	NA|199aa|up_0|NZ_CP028381.1_1194830_1195427_-	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|443aa|down_0|NZ_CP028381.1_1196055_1197384_-	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|165aa|down_1|NZ_CP028381.1_1197404_1197899_-	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|197aa|down_2|NZ_CP028381.1_1197909_1198500_-	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|267aa|down_3|NZ_CP028381.1_1198509_1199310_-	TIGR03611, RutD, pyrimidine utilization protein D	NA|129aa|down_4|NZ_CP028381.1_1199317_1199704_-	TIGR03610, RutC, pyrimidine utilization protein C	NA|231aa|down_5|NZ_CP028381.1_1199715_1200408_-	TIGR03614, RutB, pyrimidine utilization protein B	NA|364aa|down_6|NZ_CP028381.1_1200407_1201499_-	TIGR03612, RutA, pyrimidine utilization protein A	NA|213aa|down_7|NZ_CP028381.1_1201786_1202425_+	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|1321aa|down_8|NZ_CP028381.1_1202464_1206427_-	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|70aa|down_9|NZ_CP028381.1_1206481_1206691_+	NA
GCF_003176855.1_ASM317685v1	NZ_CP028381	Escherichia coli strain RM10466 chromosome, complete genome	3	3184170-3184626	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	7,7,7	7	TypeI-E	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP028381.1_3175981_3176743_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP028381.1_3176723_3177773_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP028381.1_3177769_3178249_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP028381.1_3178248_3178959_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP028381.1_3178977_3179289_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP028381.1_3179482_3179806_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP028381.1_3179855_3180461_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP028381.1_3180460_3181888_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP028381.1_3181889_3182798_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP028381.1_3183049_3184087_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP028381.1_3184722_3185016_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP028381.1_3185012_3185936_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP028381.1_3185932_3186583_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP028381.1_3186564_3187311_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP028381.1_3187321_3188377_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP028381.1_3188391_3188928_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP028381.1_3188924_3190487_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP028381.1_3190584_3193284_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP028381.1_3193477_3193630_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP028381.1_3193894_3194629_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_003176855.1_ASM317685v1	NZ_CP028381	Escherichia coli strain RM10466 chromosome, complete genome	4	3200129-3200217	4	CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	GGTTTATCCCCGCTGGCGCGGGGAACAC	28	0	0	NA	NA	I-E	1	1	TypeI-E	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|121aa|down_3|NZ_CP028381.1_3202957_3203320_+	cas5|249aa|up_9|NZ_CP028381.1_3186564_3187311_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|up_8|NZ_CP028381.1_3187321_3188377_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|up_7|NZ_CP028381.1_3188391_3188928_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|up_6|NZ_CP028381.1_3188924_3190487_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|up_5|NZ_CP028381.1_3190584_3193284_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|up_4|NZ_CP028381.1_3193477_3193630_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|up_3|NZ_CP028381.1_3193894_3194629_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_2|NZ_CP028381.1_3194702_3196415_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_1|NZ_CP028381.1_3196414_3198214_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|up_0|NZ_CP028381.1_3198529_3198895_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|224aa|down_0|NZ_CP028381.1_3200556_3201228_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|201aa|down_1|NZ_CP028381.1_3201400_3202003_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|302aa|down_2|NZ_CP028381.1_3202016_3202922_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|121aa|down_3|NZ_CP028381.1_3202957_3203320_+	NA	NA|433aa|down_4|NZ_CP028381.1_3203375_3204674_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_5|NZ_CP028381.1_3204761_3206399_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_6|NZ_CP028381.1_3206626_3207418_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_7|NZ_CP028381.1_3207488_3207824_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_8|NZ_CP028381.1_3207823_3208072_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_9|NZ_CP028381.1_3208149_3210384_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
