assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003177055.1_ASM317705v1	NZ_CP029451	Sinorhizobium fredii CCBAU 25509 chromosome, complete genome	1	287211-287284	1	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh	Orphan	TCCACGGATCAGCTTGCCGCCTTGA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,RT	NA,NA|63aa|down_2|NZ_CP029451.1_295851_296040_-	NA|73aa|up_9|NZ_CP029451.1_269967_270186_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|207aa|up_8|NZ_CP029451.1_270233_270854_+	PRK01441, PRK01441, Maf-like protein; Reviewed	NA|71aa|up_7|NZ_CP029451.1_270860_271073_+	PRK01343, PRK01343, zinc-binding protein; Provisional	NA|177aa|up_6|NZ_CP029451.1_271926_272457_+	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism]	NA|125aa|up_5|NZ_CP029451.1_272661_273036_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|304aa|up_4|NZ_CP029451.1_273256_274168_-	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold	NA|455aa|up_3|NZ_CP029451.1_274288_275653_+	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]	NA|686aa|up_2|NZ_CP029451.1_281802_283860_+	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]	NA|418aa|up_1|NZ_CP029451.1_283887_285141_+	pfam12248, Methyltransf_FA, Farnesoic acid 0-methyl transferase	NA|386aa|up_0|NZ_CP029451.1_285190_286348_+	COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]	NA|358aa|down_0|NZ_CP029451.1_293791_294865_-	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|154aa|down_1|NZ_CP029451.1_295307_295769_-	cd04333, ProX_deacylase, This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens  ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS)	NA|63aa|down_2|NZ_CP029451.1_295851_296040_-	NA	NA|85aa|down_3|NZ_CP029451.1_296209_296464_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|431aa|down_4|NZ_CP029451.1_296660_297953_-	COG4952, COG4952, Predicted sugar isomerase [Cell envelope biogenesis, outer membrane]	NA|700aa|down_5|NZ_CP029451.1_297966_300066_-	PRK08324, PRK08324, bifunctional aldolase/short-chain dehydrogenase	NA|271aa|down_6|NZ_CP029451.1_300267_301080_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|330aa|down_7|NZ_CP029451.1_301208_302198_+	TIGR02637, putative_secreted_solute-binding_lipoprotein, rhamnose ABC transporter, rhamnose-binding protein	NA|504aa|down_8|NZ_CP029451.1_302489_304001_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|327aa|down_9|NZ_CP029451.1_303997_304978_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]
GCF_003177055.1_ASM317705v1	NZ_CP029451	Sinorhizobium fredii CCBAU 25509 chromosome, complete genome	2	287379-287452	2	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh	Orphan	TCCACGGATCAGCTTGCCGCCTTGA	25	1	1	287404-287426	NZ_CP029451.1_2998610-2998632	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,RT	NA,NA|63aa|down_2|NZ_CP029451.1_295851_296040_-	NA|73aa|up_9|NZ_CP029451.1_269967_270186_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|207aa|up_8|NZ_CP029451.1_270233_270854_+	PRK01441, PRK01441, Maf-like protein; Reviewed	NA|71aa|up_7|NZ_CP029451.1_270860_271073_+	PRK01343, PRK01343, zinc-binding protein; Provisional	NA|177aa|up_6|NZ_CP029451.1_271926_272457_+	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism]	NA|125aa|up_5|NZ_CP029451.1_272661_273036_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|304aa|up_4|NZ_CP029451.1_273256_274168_-	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold	NA|455aa|up_3|NZ_CP029451.1_274288_275653_+	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]	NA|686aa|up_2|NZ_CP029451.1_281802_283860_+	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]	NA|418aa|up_1|NZ_CP029451.1_283887_285141_+	pfam12248, Methyltransf_FA, Farnesoic acid 0-methyl transferase	NA|386aa|up_0|NZ_CP029451.1_285190_286348_+	COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]	NA|358aa|down_0|NZ_CP029451.1_293791_294865_-	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|154aa|down_1|NZ_CP029451.1_295307_295769_-	cd04333, ProX_deacylase, This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens  ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS)	NA|63aa|down_2|NZ_CP029451.1_295851_296040_-	NA	NA|85aa|down_3|NZ_CP029451.1_296209_296464_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|431aa|down_4|NZ_CP029451.1_296660_297953_-	COG4952, COG4952, Predicted sugar isomerase [Cell envelope biogenesis, outer membrane]	NA|700aa|down_5|NZ_CP029451.1_297966_300066_-	PRK08324, PRK08324, bifunctional aldolase/short-chain dehydrogenase	NA|271aa|down_6|NZ_CP029451.1_300267_301080_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|330aa|down_7|NZ_CP029451.1_301208_302198_+	TIGR02637, putative_secreted_solute-binding_lipoprotein, rhamnose ABC transporter, rhamnose-binding protein	NA|504aa|down_8|NZ_CP029451.1_302489_304001_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|327aa|down_9|NZ_CP029451.1_303997_304978_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]
GCF_003177055.1_ASM317705v1	NZ_CP029451	Sinorhizobium fredii CCBAU 25509 chromosome, complete genome	3	287616-287688	3	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh	Orphan	TCCACGGATCAGCTTGCCGCCTTGA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,RT	NA,NA|63aa|down_2|NZ_CP029451.1_295851_296040_-	NA|73aa|up_9|NZ_CP029451.1_269967_270186_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|207aa|up_8|NZ_CP029451.1_270233_270854_+	PRK01441, PRK01441, Maf-like protein; Reviewed	NA|71aa|up_7|NZ_CP029451.1_270860_271073_+	PRK01343, PRK01343, zinc-binding protein; Provisional	NA|177aa|up_6|NZ_CP029451.1_271926_272457_+	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism]	NA|125aa|up_5|NZ_CP029451.1_272661_273036_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|304aa|up_4|NZ_CP029451.1_273256_274168_-	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold	NA|455aa|up_3|NZ_CP029451.1_274288_275653_+	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]	NA|686aa|up_2|NZ_CP029451.1_281802_283860_+	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]	NA|418aa|up_1|NZ_CP029451.1_283887_285141_+	pfam12248, Methyltransf_FA, Farnesoic acid 0-methyl transferase	NA|386aa|up_0|NZ_CP029451.1_285190_286348_+	COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]	NA|358aa|down_0|NZ_CP029451.1_293791_294865_-	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|154aa|down_1|NZ_CP029451.1_295307_295769_-	cd04333, ProX_deacylase, This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens  ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS)	NA|63aa|down_2|NZ_CP029451.1_295851_296040_-	NA	NA|85aa|down_3|NZ_CP029451.1_296209_296464_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|431aa|down_4|NZ_CP029451.1_296660_297953_-	COG4952, COG4952, Predicted sugar isomerase [Cell envelope biogenesis, outer membrane]	NA|700aa|down_5|NZ_CP029451.1_297966_300066_-	PRK08324, PRK08324, bifunctional aldolase/short-chain dehydrogenase	NA|271aa|down_6|NZ_CP029451.1_300267_301080_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|330aa|down_7|NZ_CP029451.1_301208_302198_+	TIGR02637, putative_secreted_solute-binding_lipoprotein, rhamnose ABC transporter, rhamnose-binding protein	NA|504aa|down_8|NZ_CP029451.1_302489_304001_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|327aa|down_9|NZ_CP029451.1_303997_304978_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]
GCF_003177055.1_ASM317705v1	NZ_CP029451	Sinorhizobium fredii CCBAU 25509 chromosome, complete genome	4	525581-525733	4	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh	Orphan	ACCTGCTGTGCTAAGGCTGTCGCCTTATCGCATCATGTCCATGCCGCCC	49	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,RT	NA|143aa|up_6|NZ_CP029451.1_516203_516632_-,NA|207aa|down_5|NZ_CP029451.1_534691_535312_+	NA|248aa|up_9|NZ_CP029451.1_513645_514389_-	COG1376, ErfK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|212aa|up_8|NZ_CP029451.1_514613_515249_+	pfam03352, Adenine_glyco, Methyladenine glycosylase	NA|124aa|up_7|NZ_CP029451.1_515314_515686_-	COG3544, COG3544, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_6|NZ_CP029451.1_516203_516632_-	NA	NA|505aa|up_5|NZ_CP029451.1_516877_518392_+	COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	NA|381aa|up_4|NZ_CP029451.1_518391_519534_+	PRK12295, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional	NA|232aa|up_3|NZ_CP029451.1_519530_520226_+	PRK13583, hisG, ATP phosphoribosyltransferase	NA|236aa|up_2|NZ_CP029451.1_520339_521047_+	PRK11752, PRK11752, putative S-transferase; Provisional	NA|409aa|up_1|NZ_CP029451.1_521182_522409_+	PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional	NA|929aa|up_0|NZ_CP029451.1_522606_525393_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|99aa|down_0|NZ_CP029451.1_527412_527709_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|276aa|down_1|NZ_CP029451.1_527975_528803_+	COG4275, COG4275, Uncharacterized conserved protein [Function unknown]	NA|283aa|down_2|NZ_CP029451.1_529534_530383_+	cd07525, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily	NA|328aa|down_3|NZ_CP029451.1_530396_531380_+	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|970aa|down_4|NZ_CP029451.1_531657_534567_+	PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional	NA|207aa|down_5|NZ_CP029451.1_534691_535312_+	NA	NA|160aa|down_6|NZ_CP029451.1_535315_535795_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|150aa|down_7|NZ_CP029451.1_535805_536255_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|614aa|down_8|NZ_CP029451.1_536327_538169_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|186aa|down_9|NZ_CP029451.1_538175_538733_+	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]
GCF_003177055.1_ASM317705v1	NZ_CP029451	Sinorhizobium fredii CCBAU 25509 chromosome, complete genome	5	1014279-1014388	5	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh	Orphan	GCGGCGCGGACGGTCGTCACGATCGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,RT	NA|318aa|up_1|NZ_CP029451.1_1012838_1013792_-,NA	NA|233aa|up_9|NZ_CP029451.1_1000580_1001279_+	PRK05305, PRK05305, phosphatidylserine decarboxylase family protein	NA|239aa|up_8|NZ_CP029451.1_1002224_1002941_-	PRK08945, PRK08945, putative oxoacyl-(acyl carrier protein) reductase; Provisional	NA|497aa|up_7|NZ_CP029451.1_1002978_1004469_-	PRK09123, PRK09123, amidophosphoribosyltransferase; Provisional	NA|380aa|up_6|NZ_CP029451.1_1006884_1008024_-	COG0787, Alr, Alanine racemase [Cell envelope biogenesis, outer membrane]	NA|221aa|up_5|NZ_CP029451.1_1009129_1009792_+	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|102aa|up_4|NZ_CP029451.1_1009788_1010094_+	COG4541, COG4541, Predicted membrane protein [Function unknown]	NA|500aa|up_3|NZ_CP029451.1_1010300_1011800_-	PRK09165, PRK09165, replicative DNA helicase; Provisional	NA|192aa|up_2|NZ_CP029451.1_1012227_1012803_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|318aa|up_1|NZ_CP029451.1_1012838_1013792_-	NA	NA|83aa|up_0|NZ_CP029451.1_1013983_1014232_-	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|111aa|down_0|NZ_CP029451.1_1015075_1015408_+	cd08026, DUF326, Cysteine-rich 4 helical bundle widely conserved in bacteria	NA|348aa|down_1|NZ_CP029451.1_1015443_1016487_-	cd19094, AKR_Tas-like, Escherichia coli Tas protein and similar proteins	NA|315aa|down_2|NZ_CP029451.1_1016817_1017762_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|246aa|down_3|NZ_CP029451.1_1017788_1018526_+	PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed	NA|79aa|down_4|NZ_CP029451.1_1018864_1019101_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|422aa|down_5|NZ_CP029451.1_1019316_1020582_+	PRK07314, PRK07314, beta-ketoacyl-ACP synthase II	NA|396aa|down_6|NZ_CP029451.1_1020867_1022055_+	COG1559, COG1559, Aminodeoxychorismate lyase [Coenzyme transport and metabolism]	NA|296aa|down_7|NZ_CP029451.1_1022259_1023147_+	COG1561, COG1561, Uncharacterized stress-induced protein [Function unknown]	NA|220aa|down_8|NZ_CP029451.1_1023150_1023810_+	PRK00300, gmk, guanylate kinase; Provisional	NA|275aa|down_9|NZ_CP029451.1_1023939_1024764_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA
