assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003177075.1_ASM317707v1	NZ_CP029546	Lacticaseibacillus paracasei strain EG9 chromosome, complete genome	1	520667-520775	1	CRISPRCasFinder	no		csa3,DinG,WYL,DEDDh,cas3,csn2,cas2,cas9	Orphan	GGTCCTTACACGTAGGTTTCTGGTCTG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,cas3,csn2,cas2,cas9	NA|576aa|up_2|NZ_CP029546.1_516353_518081_-,NA	NA|668aa|up_9|NZ_CP029546.1_507154_509158_+	cd01951, lectin_L-type, legume lectins	NA|307aa|up_8|NZ_CP029546.1_509843_510764_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|234aa|up_7|NZ_CP029546.1_511052_511754_+	pfam13731, WxL, WxL domain surface cell wall-binding	NA|120aa|up_6|NZ_CP029546.1_511907_512267_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|234aa|up_5|NZ_CP029546.1_512250_512952_+	pfam13731, WxL, WxL domain surface cell wall-binding	NA|674aa|up_4|NZ_CP029546.1_513113_515135_+	cd01951, lectin_L-type, legume lectins	NA|325aa|up_3|NZ_CP029546.1_515211_516186_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|576aa|up_2|NZ_CP029546.1_516353_518081_-	NA	NA|265aa|up_1|NZ_CP029546.1_518067_518862_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|275aa|up_0|NZ_CP029546.1_519692_520517_-	PRK07105, PRK07105, pyridoxamine kinase; Validated	NA|291aa|down_0|NZ_CP029546.1_520902_521775_-	TIGR00676, 510-methylenetetrahydrofolate_reductase	NA|762aa|down_1|NZ_CP029546.1_521752_524038_-	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional	NA|573aa|down_2|NZ_CP029546.1_524912_526631_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|594aa|down_3|NZ_CP029546.1_526635_528417_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|415aa|down_4|NZ_CP029546.1_528578_529823_+	cd17353, MFS_OFA_like, Oxalate:formate antiporter (OFA) and similar proteins of the Major Facilitator Superfamily of transporters	NA|239aa|down_5|NZ_CP029546.1_530109_530826_+	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B	NA|549aa|down_6|NZ_CP029546.1_531051_532698_+	TIGR02403, Trehalose-6-phosphate_hydrolase, alpha,alpha-phosphotrehalase	NA|668aa|down_7|NZ_CP029546.1_532788_534792_+	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|435aa|down_8|NZ_CP029546.1_535133_536438_+	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|492aa|down_9|NZ_CP029546.1_536658_538134_+	TIGR00909, putative_amino_acid_transporter, amino acid transporter
GCF_003177075.1_ASM317707v1	NZ_CP029546	Lacticaseibacillus paracasei strain EG9 chromosome, complete genome	2	596487-596594	2	CRISPRCasFinder	no		csa3,DinG,WYL,DEDDh,cas3,csn2,cas2,cas9	Orphan	CAGGGCTTTGGTCGTTTAGGTTCG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,cas3,csn2,cas2,cas9	NA|48aa|up_0|NZ_CP029546.1_596233_596377_+,NA|78aa|down_1|NZ_CP029546.1_597508_597742_-,NA|60aa|down_5|NZ_CP029546.1_600681_600861_+,NA|175aa|down_6|NZ_CP029546.1_600938_601463_+,NA|354aa|down_9|NZ_CP029546.1_603394_604456_-	NA|227aa|up_9|NZ_CP029546.1_586190_586871_-	pfam16161, DUF4867, Domain of unknown function (DUF4867)	NA|313aa|up_8|NZ_CP029546.1_586892_587831_-	PRK13508, PRK13508, tagatose-6-phosphate kinase; Provisional	NA|334aa|up_7|NZ_CP029546.1_587945_588947_-	PRK12399, PRK12399, tagatose 1,6-diphosphate aldolase; Reviewed	NA|173aa|up_6|NZ_CP029546.1_588985_589504_-	PRK08622, PRK08622, galactose-6-phosphate isomerase subunit LacB; Reviewed	NA|143aa|up_5|NZ_CP029546.1_589548_589977_-	PRK08621, PRK08621, galactose-6-phosphate isomerase subunit LacA; Reviewed	NA|259aa|up_4|NZ_CP029546.1_589981_590758_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|209aa|up_3|NZ_CP029546.1_591201_591828_-	pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase	NA|374aa|up_2|NZ_CP029546.1_591888_593010_+	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|1042aa|up_1|NZ_CP029546.1_593009_596135_+	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|48aa|up_0|NZ_CP029546.1_596233_596377_+	NA	NA|159aa|down_0|NZ_CP029546.1_597038_597515_+	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	NA|78aa|down_1|NZ_CP029546.1_597508_597742_-	NA	NA|368aa|down_2|NZ_CP029546.1_597914_599018_+	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|262aa|down_3|NZ_CP029546.1_599228_600014_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|223aa|down_4|NZ_CP029546.1_600016_600685_+	pfam02525, Flavodoxin_2, Flavodoxin-like fold	NA|60aa|down_5|NZ_CP029546.1_600681_600861_+	NA	NA|175aa|down_6|NZ_CP029546.1_600938_601463_+	NA	NA|211aa|down_7|NZ_CP029546.1_601695_602328_+	COG4832, COG4832, Uncharacterized conserved protein [Function unknown]	NA|274aa|down_8|NZ_CP029546.1_602399_603221_-	cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1	NA|354aa|down_9|NZ_CP029546.1_603394_604456_-	NA
GCF_003177075.1_ASM317707v1	NZ_CP029546	Lacticaseibacillus paracasei strain EG9 chromosome, complete genome	3	1751704-1751774	3	CRISPRCasFinder	no		csa3,DinG,WYL,DEDDh,cas3,csn2,cas2,cas9	Orphan	AAACCGGCTCAGTTCACGCTCTT	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,cas3,csn2,cas2,cas9	NA|146aa|up_2|NZ_CP029546.1_1746912_1747350_-,NA	NA|380aa|up_9|NZ_CP029546.1_1740187_1741327_-	cd08659, M20_ArgE_DapE-like, Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE)-like	NA|202aa|up_8|NZ_CP029546.1_1741405_1742011_-	COG4684, COG4684, Predicted membrane protein [Function unknown]	NA|155aa|up_7|NZ_CP029546.1_1742738_1743203_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|151aa|up_6|NZ_CP029546.1_1743195_1743648_-	PRK04351, PRK04351, SprT family protein	NA|251aa|up_5|NZ_CP029546.1_1743789_1744542_-	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|300aa|up_4|NZ_CP029546.1_1744534_1745434_-	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|332aa|up_3|NZ_CP029546.1_1745430_1746426_-	cd06325, PBP1_ABC_unchar_transporter, type 1 periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions	NA|146aa|up_2|NZ_CP029546.1_1746912_1747350_-	NA	NA|887aa|up_1|NZ_CP029546.1_1747486_1750147_-	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp	NA|386aa|up_0|NZ_CP029546.1_1750454_1751612_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|276aa|down_0|NZ_CP029546.1_1751878_1752706_-	PRK00768, nadE, ammonia-dependent NAD(+) synthetase	NA|398aa|down_1|NZ_CP029546.1_1752708_1753902_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|488aa|down_2|NZ_CP029546.1_1753905_1755369_-	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|234aa|down_3|NZ_CP029546.1_1755731_1756433_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|382aa|down_4|NZ_CP029546.1_1756457_1757603_-	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|266aa|down_5|NZ_CP029546.1_1757709_1758507_-	COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]	NA|659aa|down_6|NZ_CP029546.1_1758519_1760496_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|276aa|down_7|NZ_CP029546.1_1760824_1761652_-	TIGR03729, acc_ester, putative phosphoesterase	NA|489aa|down_8|NZ_CP029546.1_1761713_1763180_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|773aa|down_9|NZ_CP029546.1_1763654_1765973_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein
GCF_003177075.1_ASM317707v1	NZ_CP029546	Lacticaseibacillus paracasei strain EG9 chromosome, complete genome	4	1763379-1763496	4	CRISPRCasFinder	no		csa3,DinG,WYL,DEDDh,cas3,csn2,cas2,cas9	Orphan	GGTCCTTATGTGTAGGTTTCTGGGCCAGC	29	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,cas3,csn2,cas2,cas9	NA,NA|125aa|down_1|NZ_CP029546.1_1766398_1766773_-,NA|141aa|down_2|NZ_CP029546.1_1766912_1767335_-,NA|56aa|down_6|NZ_CP029546.1_1773036_1773204_-,NA|170aa|down_9|NZ_CP029546.1_1777268_1777778_-	NA|386aa|up_9|NZ_CP029546.1_1750454_1751612_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|276aa|up_8|NZ_CP029546.1_1751878_1752706_-	PRK00768, nadE, ammonia-dependent NAD(+) synthetase	NA|398aa|up_7|NZ_CP029546.1_1752708_1753902_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|488aa|up_6|NZ_CP029546.1_1753905_1755369_-	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|234aa|up_5|NZ_CP029546.1_1755731_1756433_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|382aa|up_4|NZ_CP029546.1_1756457_1757603_-	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|266aa|up_3|NZ_CP029546.1_1757709_1758507_-	COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]	NA|659aa|up_2|NZ_CP029546.1_1758519_1760496_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|276aa|up_1|NZ_CP029546.1_1760824_1761652_-	TIGR03729, acc_ester, putative phosphoesterase	NA|489aa|up_0|NZ_CP029546.1_1761713_1763180_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|773aa|down_0|NZ_CP029546.1_1763654_1765973_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|125aa|down_1|NZ_CP029546.1_1766398_1766773_-	NA	NA|141aa|down_2|NZ_CP029546.1_1766912_1767335_-	NA	NA|379aa|down_3|NZ_CP029546.1_1769421_1770558_+	smart00812, Alpha_L_fucos, Alpha-L-fucosidase	NA|106aa|down_4|NZ_CP029546.1_1770666_1770984_-	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH	NA|556aa|down_5|NZ_CP029546.1_1771154_1772822_-	PRK09344, PRK09344, phosphoenolpyruvate carboxykinase	NA|56aa|down_6|NZ_CP029546.1_1773036_1773204_-	NA	NA|704aa|down_7|NZ_CP029546.1_1773239_1775351_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|251aa|down_8|NZ_CP029546.1_1776028_1776781_-	cd01840, SGNH_hydrolase_yrhL_like, yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases	NA|170aa|down_9|NZ_CP029546.1_1777268_1777778_-	NA
GCF_003177075.1_ASM317707v1	NZ_CP029546	Lacticaseibacillus paracasei strain EG9 chromosome, complete genome	5	2144816-2145973	5,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	csn2,cas2,cas9	csa3,DinG,WYL,DEDDh,cas3,csn2,cas2,cas9	Type II-C,Type II-B,Type II-A	GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC,GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC,GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC,AGGCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	36,36,36,38	0	0	NA	NA	NA:NA:NA:NA	17,17,10,10	17	TypeII-C,TypeII-B,TypeII-A	csa3,DinG,WYL,DEDDh,cas3,csn2,cas2,cas9	NA|119aa|up_9|NZ_CP029546.1_2128423_2128780_+,NA|367aa|up_0|NZ_CP029546.1_2143370_2144471_-,NA|265aa|down_3|NZ_CP029546.1_2152289_2153084_-,NA|389aa|down_4|NZ_CP029546.1_2153084_2154251_-,NA|108aa|down_6|NZ_CP029546.1_2154917_2155241_+	NA|119aa|up_9|NZ_CP029546.1_2128423_2128780_+	NA	NA|476aa|up_8|NZ_CP029546.1_2128916_2130344_+	pfam03577, Peptidase_C69, Peptidase family C69	NA|444aa|up_7|NZ_CP029546.1_2130445_2131777_-	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]	NA|189aa|up_6|NZ_CP029546.1_2133689_2134256_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|483aa|up_5|NZ_CP029546.1_2134382_2135831_-	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed	NA|286aa|up_4|NZ_CP029546.1_2138283_2139141_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|544aa|up_3|NZ_CP029546.1_2139278_2140910_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|564aa|up_2|NZ_CP029546.1_2140906_2142598_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|142aa|up_1|NZ_CP029546.1_2142794_2143220_-	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown]	NA|367aa|up_0|NZ_CP029546.1_2143370_2144471_-	NA	csn2|226aa|down_0|NZ_CP029546.1_2145997_2146675_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_1|NZ_CP029546.1_2146671_2146977_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas9|1362aa|down_2|NZ_CP029546.1_2148055_2152141_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|265aa|down_3|NZ_CP029546.1_2152289_2153084_-	NA	NA|389aa|down_4|NZ_CP029546.1_2153084_2154251_-	NA	NA|125aa|down_5|NZ_CP029546.1_2154474_2154849_+	pfam06486, DUF1093, Protein of unknown function (DUF1093)	NA|108aa|down_6|NZ_CP029546.1_2154917_2155241_+	NA	NA|576aa|down_7|NZ_CP029546.1_2155312_2157040_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|581aa|down_8|NZ_CP029546.1_2157020_2158763_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|338aa|down_9|NZ_CP029546.1_2158759_2159773_-	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II
