assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003181035.1_ASM318103v1	NZ_CP029576	Escherichia coli strain DA33135 chromosome, complete genome	1	1225737-1225860	1	CRISPRCasFinder	no		RT,csa3,cas3,DEDDh,c2c9_V-U4,DinG	Orphan	GCATCCGACAGCCGTTGCCTGATGCGACGCCAG	33	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas3,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|407aa|up_9|NZ_CP029576.1_1215068_1216289_+	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I	NA|393aa|up_8|NZ_CP029576.1_1216553_1217732_+	PRK12382, PRK12382, putative transporter; Provisional	NA|332aa|up_7|NZ_CP029576.1_1217728_1218724_-	PRK10715, flk, flagella biosynthesis regulator Flk	NA|379aa|up_6|NZ_CP029576.1_1218822_1219959_+	PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional	NA|338aa|up_5|NZ_CP029576.1_1220024_1221038_+	PRK08040, PRK08040, putative semialdehyde dehydrogenase; Provisional	NA|271aa|up_4|NZ_CP029576.1_1221037_1221850_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|220aa|up_3|NZ_CP029576.1_1221932_1222592_+	PRK10847, PRK10847, DedA family protein	NA|305aa|up_2|NZ_CP029576.1_1222747_1223662_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|423aa|up_1|NZ_CP029576.1_1223731_1225000_+	PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional	NA|221aa|up_0|NZ_CP029576.1_1224989_1225652_+	PRK11633, PRK11633, cell division protein DedD; Provisional	NA|163aa|down_0|NZ_CP029576.1_1226092_1226581_+	PRK10845, PRK10845, colicin V production protein; Provisional	NA|506aa|down_1|NZ_CP029576.1_1226617_1228135_+	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional	NA|190aa|down_2|NZ_CP029576.1_1228229_1228799_+	PRK06029, PRK06029, UbiX family flavin prenyltransferase	NA|261aa|down_3|NZ_CP029576.1_1229064_1229847_+	PRK15010, PRK15010, lysine/arginine/ornithine ABC transporter substrate-binding protein ArgT	NA|261aa|down_4|NZ_CP029576.1_1230067_1230850_+	PRK15437, PRK15437, histidine ABC transporter substrate-binding protein HisJ; Provisional	NA|229aa|down_5|NZ_CP029576.1_1230939_1231626_+	PRK15135, PRK15135, histidine ABC transporter permease HisQ	NA|239aa|down_6|NZ_CP029576.1_1231622_1232339_+	PRK15069, PRK15069, histidine ABC transporter permease HisM	NA|258aa|down_7|NZ_CP029576.1_1232346_1233120_+	PRK10619, PRK10619, histidine ABC transporter ATP-binding protein HisP	NA|298aa|down_8|NZ_CP029576.1_1233278_1234172_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|121aa|down_9|NZ_CP029576.1_1234192_1234555_-	PRK11245, folX, dihydroneopterin triphosphate 2'-epimerase
GCF_003181035.1_ASM318103v1	NZ_CP029576	Escherichia coli strain DA33135 chromosome, complete genome	2	1955893-1956016	2	CRISPRCasFinder	no	DEDDh	RT,csa3,cas3,DEDDh,c2c9_V-U4,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas3,DEDDh,c2c9_V-U4,DinG	NA,NA|30aa|down_7|NZ_CP029576.1_1964912_1965002_+	NA|471aa|up_9|NZ_CP029576.1_1945345_1946758_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP029576.1_1947314_1947524_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP029576.1_1947979_1948606_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP029576.1_1948626_1950729_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP029576.1_1950741_1951380_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP029576.1_1951443_1952112_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP029576.1_1952108_1952894_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP029576.1_1952897_1953710_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP029576.1_1953721_1955326_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP029576.1_1955451_1955757_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP029576.1_1956330_1957587_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP029576.1_1957627_1959001_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP029576.1_1959215_1959857_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP029576.1_1959896_1961045_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP029576.1_1961335_1962547_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP029576.1_1962659_1963592_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP029576.1_1963588_1964614_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP029576.1_1964912_1965002_+	NA	NA|390aa|down_8|NZ_CP029576.1_1965167_1966337_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP029576.1_1966482_1967064_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_003181035.1_ASM318103v1	NZ_CP029576	Escherichia coli strain DA33135 chromosome, complete genome	3	2676647-2676738	3	CRISPRCasFinder	no		RT,csa3,cas3,DEDDh,c2c9_V-U4,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas3,DEDDh,c2c9_V-U4,DinG	NA|70aa|up_9|NZ_CP029576.1_2665897_2666107_-,NA	NA|70aa|up_9|NZ_CP029576.1_2665897_2666107_-	NA	NA|1321aa|up_8|NZ_CP029576.1_2666161_2670124_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP029576.1_2670163_2670802_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP029576.1_2671089_2672181_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP029576.1_2672180_2672873_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP029576.1_2672884_2673271_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP029576.1_2673278_2674079_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP029576.1_2674088_2674679_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP029576.1_2674689_2675184_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP029576.1_2675204_2676533_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP029576.1_2677161_2677758_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP029576.1_2677778_2678006_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP029576.1_2678043_2679285_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP029576.1_2679819_2680740_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP029576.1_2680739_2681045_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP029576.1_2681299_2681899_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP029576.1_2681895_2684442_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP029576.1_2684441_2685614_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP029576.1_2685743_2686436_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP029576.1_2686408_2687437_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_003181035.1_ASM318103v1	NZ_CP029576	Escherichia coli strain DA33135 chromosome, complete genome	4	2837083-2837165	4	CRISPRCasFinder	no		RT,csa3,cas3,DEDDh,c2c9_V-U4,DinG	Orphan	ATCTGCCTGTACGGCAGTGAACT	23	0	0	NA	NA	I-F	1	1	Orphan	RT,csa3,cas3,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|431aa|up_9|NZ_CP029576.1_2822080_2823373_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP029576.1_2823463_2824807_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP029576.1_2824817_2825429_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1369aa|up_6|NZ_CP029576.1_2825587_2829694_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP029576.1_2829828_2830323_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP029576.1_2830866_2831832_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP029576.1_2831954_2833721_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP029576.1_2833721_2835443_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP029576.1_2835484_2836189_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP029576.1_2836473_2836692_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP029576.1_2837376_2839653_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP029576.1_2839683_2840004_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP029576.1_2840326_2840551_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP029576.1_2840623_2842570_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP029576.1_2842566_2843682_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP029576.1_2843832_2844789_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP029576.1_2844785_2846444_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP029576.1_2846868_2847564_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP029576.1_2847978_2848878_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP029576.1_2849021_2850674_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_003181035.1_ASM318103v1	NZ_CP029576	Escherichia coli strain DA33135 chromosome, complete genome	5	3684129-3684261	1	PILER-CR	no		RT,csa3,cas3,DEDDh,c2c9_V-U4,DinG	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,cas3,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|105aa|up_9|NZ_CP029576.1_3675500_3675815_-	pfam01845, CcdB, CcdB protein	NA|78aa|up_8|NZ_CP029576.1_3675817_3676051_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP029576.1_3676136_3676616_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP029576.1_3676807_3678670_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP029576.1_3678662_3679193_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP029576.1_3679300_3680632_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP029576.1_3680690_3680978_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP029576.1_3680974_3682261_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP029576.1_3682311_3683253_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP029576.1_3683267_3684038_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP029576.1_3684510_3686025_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP029576.1_3686056_3687199_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP029576.1_3687316_3688534_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP029576.1_3688606_3690160_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP029576.1_3690268_3691054_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP029576.1_3691059_3691650_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP029576.1_3691768_3692164_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP029576.1_3692424_3695646_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP029576.1_3695663_3696812_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP029576.1_3697267_3698089_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
