The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP029603	Bradyrhizobium diazoefficiens strain XF7 chromosome, complete genome	9270175	1585630	1592720	9270175		Salmonella_phage(16.67%)	6	NA	NA
WP_011084134.1|1585630_1586095_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.3	8.5e-45
WP_011084135.1|1586214_1586700_-	peroxiredoxin	NA	M1I839	Pelagibacter_phage	45.8	6.8e-21
WP_011084136.1|1586808_1587363_-	DUF924 domain-containing protein	NA	A0A1V0SIY0	Klosneuvirus	31.8	1.7e-15
WP_011084137.1|1587378_1589064_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	26.9	6.9e-44
WP_011084138.1|1589257_1590721_-	penicillin-binding protein	NA	B6DZZ7	Stx2-converting_phage	35.1	3.0e-27
WP_011084139.1|1590911_1592720_-	glucan ABC transporter ATP-binding protein/ permease	NA	W8CYL7	Bacillus_phage	25.0	3.8e-32
>prophage 2
NZ_CP029603	Bradyrhizobium diazoefficiens strain XF7 chromosome, complete genome	9270175	1841740	1900171	9270175	transposase	Bacillus_phage(14.29%)	43	NA	NA
WP_038971398.1|1841740_1842775_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_131233107.1|1843245_1843449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038971399.1|1843920_1844154_+	hypothetical protein	NA	NA	NA	NA	NA
WP_154694120.1|1844363_1844522_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028142010.1|1844586_1844886_+	hypothetical protein	NA	NA	NA	NA	NA
WP_074077659.1|1845580_1845760_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084366.1|1847392_1847554_+	Flp family type IVb pilin	NA	NA	NA	NA	NA
WP_110115943.1|1847623_1848688_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_162603489.1|1848852_1851792_+	EAL domain-containing protein	NA	A0A127AWB9	Bacillus_phage	35.2	1.4e-12
WP_028142008.1|1852156_1853179_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_154694119.1|1853211_1853373_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050995610.1|1853686_1854679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084371.1|1854683_1855043_-	methylamine utilization protein	NA	NA	NA	NA	NA
WP_028142006.1|1855706_1856543_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_110115943.1|1857314_1858379_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_085971921.1|1858535_1859295_+|transposase	IS5-like element ISBj2 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	3.6e-08
WP_053815125.1|1859542_1859935_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028144252.1|1860242_1860626_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498117.1|1860948_1861143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080670268.1|1861934_1863140_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_154694118.1|1863924_1864098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038936786.1|1865534_1865807_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080670263.1|1866302_1866470_+	DUF3551 domain-containing protein	NA	NA	NA	NA	NA
WP_038973697.1|1869148_1870483_+	NtaA/DmoA family FMN-dependent monooxygenase	NA	NA	NA	NA	NA
WP_110115945.1|1870515_1872204_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_110115946.1|1872200_1873163_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_028144229.1|1873159_1874041_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_014498066.1|1874037_1875765_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	5.3e-15
WP_014498065.1|1876053_1876236_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084760.1|1877920_1878250_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_110115947.1|1878390_1880004_+	recombinase family protein	NA	A0A1B2LRQ3	Wolbachia_phage	32.5	9.5e-67
WP_080704061.1|1880072_1880669_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071916625.1|1882565_1882871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028144227.1|1883518_1884304_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014498063.1|1886273_1887236_+	DUF1738 domain-containing protein	NA	A0A1B1IWW8	uncultured_Mediterranean_phage	35.0	1.2e-37
WP_049801967.1|1887341_1889495_+	ParB N-terminal domain-containing protein	NA	G8DH78	Emiliania_huxleyi_virus	32.5	1.2e-29
WP_080704062.1|1889642_1890983_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_028144224.1|1892023_1892707_+	conjugal transfer protein TrbF	NA	NA	NA	NA	NA
WP_038936969.1|1892703_1893738_+	P-type conjugative transfer protein TrbG	NA	NA	NA	NA	NA
WP_011084435.1|1893734_1894937_+	TrbI/VirB10 family protein	NA	NA	NA	NA	NA
WP_011084436.1|1894942_1895179_+	DUF2274 domain-containing protein	NA	NA	NA	NA	NA
WP_162131539.1|1895291_1895486_-	hypothetical protein	NA	NA	NA	NA	NA
WP_039155691.1|1898902_1900171_+|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	46.2	1.6e-93
>prophage 3
NZ_CP029603	Bradyrhizobium diazoefficiens strain XF7 chromosome, complete genome	9270175	1914088	2001663	9270175	transposase,integrase	Bradyrhizobium_phage(14.29%)	49	1897222:1897240	1917260:1917278
1897222:1897240	attL	GCAGTGCGGATGCGGCAGG	NA	NA	NA	NA
WP_011084450.1|1914088_1914499_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1X9SGU9	Bradyrhizobium_phage	36.6	1.1e-06
WP_011084451.1|1914516_1914834_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071917746.1|1915398_1915587_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A2L1IV28	Escherichia_phage	35.0	4.5e-05
WP_038937322.1|1916533_1916749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014498044.1|1918406_1918895_+	hypothetical protein	NA	NA	NA	NA	NA
1917260:1917278	attR	CCTGCCGCATCCGCACTGC	NA	NA	NA	NA
WP_014498004.1|1922542_1922884_+	type II toxin-antitoxin system PrlF family antitoxin	NA	NA	NA	NA	NA
WP_011084500.1|1922880_1923384_+	type II toxin-antitoxin system YhaV family toxin	NA	NA	NA	NA	NA
WP_038937402.1|1924131_1925487_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_014498007.1|1925812_1926001_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084497.1|1926936_1927251_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084496.1|1927247_1927538_-	DUF2274 domain-containing protein	NA	NA	NA	NA	NA
WP_085965515.1|1928010_1928770_-|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	2.1e-08
WP_018273862.1|1928897_1930247_+|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
WP_014498011.1|1930386_1931049_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_095426901.1|1932219_1934082_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080586833.1|1936741_1936951_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028160640.1|1937506_1938007_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498022.1|1940597_1941362_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_014498023.1|1941358_1942633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498024.1|1942629_1943511_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028160578.1|1943491_1945372_-	ATPase	NA	NA	NA	NA	NA
WP_014498028.1|1947383_1948589_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080588800.1|1948585_1950310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498031.1|1951594_1952041_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039156367.1|1952442_1953195_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084471.1|1954797_1955604_-	hypothetical protein	NA	NA	NA	NA	NA
WP_161170739.1|1955892_1956624_-|transposase	IS6 family transposase	transposase	NA	NA	NA	NA
WP_162473611.1|1956683_1957100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039156363.1|1957968_1958172_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014498039.1|1958886_1960425_-	DUF1521 domain-containing protein	NA	NA	NA	NA	NA
WP_014498042.1|1963911_1964103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084459.1|1964439_1965246_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_035716749.1|1965520_1966327_+	hypothetical protein	NA	A0A023NHS3	Nitrincola_phage	30.1	1.4e-05
WP_110115952.1|1968751_1973893_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084508.1|1974627_1974885_-	WGR domain-containing protein	NA	NA	NA	NA	NA
WP_014497999.1|1975454_1975676_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084509.1|1976200_1976545_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084511.1|1977095_1977452_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_011084512.1|1977505_1979053_+|transposase	IS66 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	38.6	2.1e-84
WP_039156390.1|1980538_1981603_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_110115953.1|1981650_1983447_-	recombinase family protein	NA	NA	NA	NA	NA
WP_028144443.1|1983866_1986119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_171463742.1|1986391_1990717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084521.1|1991174_1991753_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038968105.1|1993833_1995102_+|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	46.2	5.5e-94
WP_014497989.1|1995899_1996286_-	response regulator	NA	NA	NA	NA	NA
WP_011084526.1|1996370_1997054_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_011084527.1|1997050_1999720_-	PAS domain S-box protein	NA	A0A1V0SGX0	Hokovirus	25.0	1.9e-08
WP_011084514.1|2000598_2001663_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP029603	Bradyrhizobium diazoefficiens strain XF7 chromosome, complete genome	9270175	2054819	2128112	9270175	transposase	Mycobacterium_phage(16.67%)	49	NA	NA
WP_038968105.1|2054819_2056088_-|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	46.2	5.5e-94
WP_014497956.1|2056144_2057254_-	molybdenum ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_161170740.1|2059321_2059618_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084599.1|2062170_2062890_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084600.1|2062944_2063694_-	hypothetical protein	NA	A0A1X9SH03	Bradyrhizobium_phage	43.6	4.4e-43
WP_080586761.1|2065672_2067019_-	insulinase family protein	NA	A0A2P1EIE5	Megavirus	22.2	1.4e-18
WP_011084606.1|2068133_2068556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084608.1|2069123_2069714_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_011084609.1|2069744_2071844_-	type III secretion system export apparatus subunit SctV	NA	NA	NA	NA	NA
WP_011084610.1|2071853_2072282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084611.1|2072284_2072821_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084612.1|2072854_2073748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497948.1|2073864_2074056_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084613.1|2074098_2074407_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497947.1|2074504_2075065_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497946.1|2075315_2076770_+	DUF1521 domain-containing protein	NA	NA	NA	NA	NA
WP_011084549.1|2076924_2077989_+|transposase	IS630-like element ISRj1 family transposase	transposase	NA	NA	NA	NA
WP_011084616.1|2078559_2078763_-	hypothetical protein	NA	NA	NA	NA	NA
WP_161966260.1|2079179_2079356_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085971921.1|2079749_2080509_+|transposase	IS5-like element ISBj2 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	3.6e-08
WP_171463834.1|2080748_2081339_-	nodulation protein NolW	NA	NA	NA	NA	NA
WP_026312858.1|2081623_2082124_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084621.1|2082132_2082996_+	type III secretion inner membrane ring lipoprotein SctJ	NA	NA	NA	NA	NA
WP_011084622.1|2083007_2083646_+	nodulation protein	NA	NA	NA	NA	NA
WP_011084623.1|2083642_2084263_+	type III secretion system stator protein SctL	NA	NA	NA	NA	NA
WP_011084624.1|2084259_2085615_+	type III secretion system ATPase SctN	NA	NA	NA	NA	NA
WP_011084625.1|2085590_2086127_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084626.1|2086123_2087245_+	type III secretion system cytoplasmic ring protein SctQ	NA	NA	NA	NA	NA
WP_011084627.1|2087237_2087903_+	type III secretion system export apparatus subunit SctR	NA	NA	NA	NA	NA
WP_011084628.1|2087905_2088181_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
WP_011084629.1|2088191_2089013_+	type III secretion system export apparatus subunit SctT	NA	NA	NA	NA	NA
WP_011084630.1|2089009_2090047_+	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_011084514.1|2094377_2095442_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_011084637.1|2096445_2096847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084638.1|2097681_2097888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041960889.1|2098017_2099352_-|transposase	IS5-like element ISBj2_B family transposase	transposase	K4ICS3	Acidithiobacillus_phage	41.6	2.1e-40
WP_011084760.1|2104424_2104754_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_011084646.1|2107515_2109831_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084647.1|2110026_2110689_-	hypothetical protein	NA	NA	NA	NA	NA
WP_018647881.1|2110699_2112154_-	type II and III secretion system protein family protein	NA	NA	NA	NA	NA
WP_011084649.1|2112180_2112870_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_011084652.1|2114883_2115951_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084653.1|2116549_2116984_+	VirK protein	NA	NA	NA	NA	NA
WP_014497924.1|2117446_2118355_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084657.1|2119761_2121243_+	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_011084658.1|2121427_2122309_+	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_011084659.1|2122859_2124101_+	cytochrome P450	NA	NA	NA	NA	NA
WP_011084660.1|2124527_2126771_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084661.1|2127101_2128112_-|transposase	IS481 family transposase	transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	64.8	1.1e-126
>prophage 5
NZ_CP029603	Bradyrhizobium diazoefficiens strain XF7 chromosome, complete genome	9270175	2234166	2405586	9270175	transposase,holin	Paenibacillus_phage(30.77%)	105	NA	NA
WP_110115808.1|2234166_2234925_+|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	3.6e-08
WP_028160487.1|2235217_2235466_-	hypothetical protein	NA	NA	NA	NA	NA
WP_100213762.1|2235573_2236920_-	radical SAM family RiPP maturation amino acid epimerase	NA	NA	NA	NA	NA
WP_039145712.1|2237320_2238385_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_039145714.1|2238375_2238663_-	Nif11 family protein	NA	NA	NA	NA	NA
WP_080703795.1|2242983_2244237_+	Tm-1-like ATP-binding domain-containing protein	NA	NA	NA	NA	NA
WP_028160572.1|2244223_2245021_+	phosphoenolpyruvate hydrolase family protein	NA	NA	NA	NA	NA
WP_038974992.1|2245082_2246840_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.9	2.2e-29
WP_038950841.1|2247169_2247646_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_028143531.1|2249190_2250294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028143530.1|2250334_2250544_+	hypothetical protein	NA	NA	NA	NA	NA
WP_154694113.1|2250975_2251134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_049802020.1|2251159_2252029_+|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
WP_157158435.1|2252225_2253062_-	DUF3800 domain-containing protein	NA	NA	NA	NA	NA
WP_162130977.1|2253097_2253247_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038974990.1|2253243_2254023_-	KilA-N domain-containing protein	NA	NA	NA	NA	NA
WP_028143528.1|2254247_2254625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_131233132.1|2254671_2255232_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028143526.1|2255267_2255732_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080669724.1|2255955_2256546_+	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA	NA
WP_028143524.1|2256538_2257564_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_028143523.1|2258174_2258819_+	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA	NA
WP_154694112.1|2259680_2259857_-	hypothetical protein	NA	NA	NA	NA	NA
WP_035711403.1|2260083_2261658_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028143521.1|2261640_2262063_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028143520.1|2262059_2262302_-	hypothetical protein	NA	NA	NA	NA	NA
WP_161966256.1|2262600_2262894_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028143518.1|2263131_2266449_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_110115960.1|2269409_2270150_-	hypothetical protein	NA	NA	NA	NA	NA
WP_110115961.1|2270398_2271898_+	alkaline phosphatase family protein	NA	NA	NA	NA	NA
WP_110115962.1|2271917_2272718_+	phosphonate metabolism transcriptional regulator PhnF	NA	NA	NA	NA	NA
WP_110117294.1|2272975_2273767_-|holin	phosphocholine cytidylyltransferase family protein	holin	NA	NA	NA	NA
WP_028143494.1|2273936_2274794_-	phosphoenolpyruvate mutase	NA	NA	NA	NA	NA
WP_028143493.1|2275397_2275610_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_171463835.1|2276447_2276672_-	hypothetical protein	NA	NA	NA	NA	NA
WP_110115964.1|2277875_2278181_+	multiubiquitin domain-containing protein	NA	NA	NA	NA	NA
WP_110115965.1|2278180_2278564_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162603492.1|2278560_2279901_+	ThiF family adenylyltransferase	NA	NA	NA	NA	NA
WP_110115967.1|2279893_2280943_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039155691.1|2281015_2282284_+|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	46.2	1.6e-93
WP_162603493.1|2282775_2283300_+	hypothetical protein	NA	NA	NA	NA	NA
WP_110115971.1|2288583_2290707_+	S9 family peptidase	NA	A0A1V0SHT0	Klosneuvirus	31.1	5.3e-41
WP_131233137.1|2291453_2291654_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	49.1	1.1e-09
WP_028143484.1|2292816_2293839_-	MFS transporter	NA	NA	NA	NA	NA
WP_018645229.1|2295331_2296888_-|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_018273862.1|2298208_2299558_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
WP_011084514.1|2299659_2300724_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_110115972.1|2300752_2301512_-|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	4.7e-08
WP_018648284.1|2306907_2307141_+	DUF2188 domain-containing protein	NA	NA	NA	NA	NA
WP_171463744.1|2309647_2311393_+	E3 ubiquitin--protein ligase	NA	NA	NA	NA	NA
WP_018648285.1|2311449_2311620_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063629895.1|2312324_2312912_-	GNAT family N-acetyltransferase	NA	C5MKY6	Human_cytomegalovirus	26.9	8.6e-10
WP_110115973.1|2316142_2317207_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_011084715.1|2317224_2318061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_110115808.1|2318481_2319240_+|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	3.6e-08
WP_162603494.1|2319204_2319978_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084720.1|2320100_2320805_-	hypothetical protein	NA	NA	NA	NA	NA
WP_110115974.1|2320916_2321348_-	hypothetical protein	NA	NA	NA	NA	NA
WP_110115976.1|2321948_2325734_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_110115977.1|2325736_2326969_-	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_011084726.1|2326977_2329086_-	DUF87 domain-containing protein	NA	NA	NA	NA	NA
WP_011084727.1|2329093_2330398_-	SIR2 family protein	NA	NA	NA	NA	NA
WP_026312796.1|2331384_2332005_-	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA	NA
WP_110115978.1|2332218_2332938_-	DCL family protein	NA	NA	NA	NA	NA
WP_110115979.1|2332938_2335449_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_131234255.1|2335411_2335639_-	hypothetical protein	NA	NA	NA	NA	NA
WP_110115980.1|2335884_2337081_+	DUF932 domain-containing protein	NA	A0A1V0DX75	Synechococcus_virus	43.7	2.8e-76
WP_028176021.1|2337254_2339378_+	ParB N-terminal domain-containing protein	NA	G8DH78	Emiliania_huxleyi_virus	30.2	1.8e-28
WP_028176020.1|2339476_2339890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_110115981.1|2344486_2345554_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_011084737.1|2345884_2346811_+	DUF2493 domain-containing protein	NA	NA	NA	NA	NA
WP_156149859.1|2351076_2351217_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080584299.1|2351251_2353687_-	porin family protein	NA	NA	NA	NA	NA
WP_011084746.1|2354488_2355046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162603799.1|2356211_2356418_+	cold shock domain-containing protein	NA	A0A1W6JNX5	Morganella_phage	45.8	4.3e-09
WP_011084751.1|2357519_2357846_+	DUF736 domain-containing protein	NA	NA	NA	NA	NA
WP_162603495.1|2357954_2358371_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084755.1|2361922_2364376_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_014497849.1|2364393_2364585_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084759.1|2365683_2367441_-	recombinase family protein	NA	A0A1B2LRQ3	Wolbachia_phage	32.5	7.9e-67
WP_011084760.1|2367581_2367911_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_011084761.1|2368045_2368642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018647915.1|2369454_2370246_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162130978.1|2371223_2371394_+	hypothetical protein	NA	NA	NA	NA	NA
WP_154694111.1|2371510_2371651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084771.1|2373435_2375754_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_011084772.1|2375959_2376259_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_014497843.1|2376339_2376495_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_011084776.1|2378596_2378824_+	hypothetical protein	NA	NA	NA	NA	NA
WP_110115808.1|2380403_2381163_-|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	3.6e-08
WP_011084778.1|2382652_2383045_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028143999.1|2383091_2383559_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084781.1|2384275_2384641_-	Nif11 family protein	NA	NA	NA	NA	NA
WP_110115984.1|2386100_2387420_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_011084786.1|2387419_2387671_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_028143997.1|2388115_2389672_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084789.1|2389661_2390300_+	DUF4194 domain-containing protein	NA	NA	NA	NA	NA
WP_110115985.1|2390296_2393731_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028143996.1|2393733_2394903_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084792.1|2395390_2395708_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028143995.1|2396425_2397958_+	polygalacturonase	NA	NA	NA	NA	NA
WP_011084794.1|2398176_2399217_+	pectinesterase	NA	NA	NA	NA	NA
WP_018647405.1|2401401_2402346_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497829.1|2404562_2405198_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084799.1|2405205_2405586_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP029603	Bradyrhizobium diazoefficiens strain XF7 chromosome, complete genome	9270175	2499581	2555485	9270175	transposase,integrase,protease,tRNA	Acinetobacter_phage(12.5%)	48	2520579:2520595	2562388:2562404
WP_011084883.1|2499581_2499869_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_011084884.1|2499865_2500339_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497769.1|2501009_2501606_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.5	5.8e-46
WP_028144144.1|2501602_2502997_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	34.9	2.2e-48
WP_011084888.1|2503150_2503468_-	Dabb family protein	NA	NA	NA	NA	NA
WP_011084889.1|2503603_2504239_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011084890.1|2504353_2505349_+	biotin synthase BioB	NA	NA	NA	NA	NA
WP_011084891.1|2505398_2505752_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_011084892.1|2505828_2506983_+	8-amino-7-oxononanoate synthase	NA	G9E4Q1	Emiliania_huxleyi_virus	28.2	1.9e-21
WP_011084893.1|2506979_2507615_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA	NA
WP_011084894.1|2507611_2508877_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.6	2.9e-10
WP_028153345.1|2510123_2511002_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	36.5	9.4e-45
WP_011084897.1|2511005_2511857_+	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_011084898.1|2511869_2512229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497761.1|2512897_2513098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497760.1|2513441_2513645_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084900.1|2514041_2514320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084901.1|2515052_2515439_+	ectoine synthase	NA	NA	NA	NA	NA
WP_162494198.1|2515977_2525916_+	amino acid adenylation domain-containing protein	NA	A0A2K9L3I8	Tupanvirus	27.5	2.0e-154
2520579:2520595	attL	GATCTGGATGCAGGACG	NA	NA	NA	NA
WP_026312933.1|2527538_2528222_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_018648598.1|2528759_2529026_+	DUF3551 domain-containing protein	NA	NA	NA	NA	NA
WP_011084907.1|2529473_2529704_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011084908.1|2530017_2530503_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_011084909.1|2530499_2530820_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_011084910.1|2530832_2531957_+	DUF3800 domain-containing protein	NA	U5N3F3	Enterobacteria_phage	39.7	2.0e-71
WP_085967575.1|2532221_2533351_-|transposase	IS3-like element ISRj2 family transposase	transposase	U5P429	Shigella_phage	33.7	2.0e-18
WP_011084912.1|2533705_2534275_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084913.1|2534320_2534851_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_011084914.1|2535145_2535352_-	cold-shock protein	NA	NA	NA	NA	NA
WP_011084916.1|2536608_2537127_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161966513.1|2537655_2538210_+	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA	NA
WP_011084918.1|2538206_2538989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_171463836.1|2539898_2540807_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_011084921.1|2541677_2541962_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162494059.1|2542197_2542701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162130951.1|2542657_2542876_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497739.1|2543870_2544074_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038968004.1|2544420_2545746_+	lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein	NA	NA	NA	NA	NA
WP_011084926.1|2545742_2547047_+	MFS transporter	NA	NA	NA	NA	NA
WP_011084927.1|2547012_2547792_+	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA	NA
WP_110115989.1|2547816_2548146_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_011084929.1|2548147_2549725_+|tRNA	class I tRNA ligase family protein	tRNA	NA	NA	NA	NA
WP_011084930.1|2549744_2550878_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_155256178.1|2551284_2551452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497735.1|2551806_2552427_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_014497734.1|2552426_2553647_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_157158178.1|2553857_2554229_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_011084934.1|2554669_2555485_+|protease	YopT-type cysteine protease domain-containing protein	protease	NA	NA	NA	NA
2562388:2562404	attR	GATCTGGATGCAGGACG	NA	NA	NA	NA
>prophage 7
NZ_CP029603	Bradyrhizobium diazoefficiens strain XF7 chromosome, complete genome	9270175	3441500	3451087	9270175		Escherichia_phage(42.86%)	8	NA	NA
WP_011085709.1|3441500_3442232_+	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	28.6	3.9e-12
WP_011085710.1|3442215_3442920_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.2	3.8e-12
WP_038965772.1|3443081_3443762_-	aldolase	NA	A0A077SK32	Escherichia_phage	49.3	4.6e-47
WP_110116024.1|3443866_3444784_+	NAD-binding protein	NA	A0A077SLF7	Escherichia_phage	48.3	1.2e-66
WP_011085713.1|3444800_3445583_+	hydroxypyruvate isomerase family protein	NA	NA	NA	NA	NA
WP_011085714.1|3445579_3446854_+	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	42.0	6.3e-74
WP_011085715.1|3447024_3448716_+	MCP four helix bundle domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	29.8	2.4e-12
WP_171463842.1|3448891_3451087_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	39.1	6.3e-13
>prophage 8
NZ_CP029603	Bradyrhizobium diazoefficiens strain XF7 chromosome, complete genome	9270175	5479029	5489226	9270175	tRNA	uncultured_Mediterranean_phage(88.89%)	12	NA	NA
WP_110116116.1|5479029_5480430_-	LysM peptidoglycan-binding domain-containing M23 family metallopeptidase	NA	Q8SBN9	Clostridium_phage	42.7	4.9e-19
WP_011087512.1|5480539_5481190_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	50.0	1.3e-27
WP_011087513.1|5481431_5481803_+	response regulator	NA	NA	NA	NA	NA
WP_028171844.1|5481806_5482574_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	37.6	1.8e-36
WP_011087515.1|5482762_5483125_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028171842.1|5483219_5484551_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.9	1.5e-97
WP_060912318.1|5484761_5485574_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	48.4	4.2e-55
WP_110116117.1|5485570_5486098_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_011087519.1|5486187_5486421_-	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	63.6	5.4e-08
WP_028171841.1|5486587_5487340_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	49.7	4.0e-44
WP_011087521.1|5487361_5488201_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	37.1	1.1e-31
WP_110116118.1|5488197_5489226_-	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	41.2	1.0e-21
>prophage 9
NZ_CP029603	Bradyrhizobium diazoefficiens strain XF7 chromosome, complete genome	9270175	5768804	5778047	9270175	tail,portal,terminase,protease,capsid,head	Pseudomonas_phage(28.57%)	15	NA	NA
WP_110116225.1|5768804_5770040_+|portal	phage portal protein	portal	A0A2K5B287	Erysipelothrix_phage	33.2	9.5e-43
WP_110116226.1|5770039_5770705_+|tail	tail assembly protein	tail	C7BGD3	Burkholderia_phage	30.3	6.7e-11
WP_110117311.1|5770707_5771028_+	gene transfer agent family protein	NA	NA	NA	NA	NA
WP_110116227.1|5771024_5771267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_110116228.1|5771267_5771765_+|head,protease	HK97 family phage prohead protease	head,protease	Q8HAD3	Salmonella_phage	39.0	8.0e-17
WP_110116229.1|5771783_5772917_+|capsid	phage major capsid protein	capsid	A0A2D1GNH4	Pseudomonas_phage	32.2	5.1e-35
WP_110116230.1|5772929_5773514_+	hypothetical protein	NA	NA	NA	NA	NA
WP_110116231.1|5773513_5773843_+	HNH endonuclease	NA	B5WZZ4	Pseudomonas_phage	58.4	5.1e-20
WP_110116232.1|5773847_5774288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_110116233.1|5774305_5774593_+|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_171463771.1|5774666_5775011_+	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_110116235.1|5775012_5775330_+|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_110116236.1|5775344_5776025_-	hypothetical protein	NA	NA	NA	NA	NA
WP_110116237.1|5776072_5776444_+|terminase	phage terminase small subunit P27 family	terminase	A0A142KAM7	Gordonia_phage	33.3	5.6e-07
WP_110116238.1|5776421_5778047_+|terminase	terminase large subunit	terminase	D0R0D0	Streptococcus_phage	33.7	2.9e-71
>prophage 10
NZ_CP029603	Bradyrhizobium diazoefficiens strain XF7 chromosome, complete genome	9270175	6633259	6640697	9270175		uncultured_virus(33.33%)	8	NA	NA
WP_028171493.1|6633259_6633574_+	co-chaperone GroES	NA	A0A221S4G8	uncultured_virus	57.6	4.7e-23
WP_011087983.1|6633622_6635245_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	59.2	6.8e-174
WP_110117335.1|6635447_6635792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011087986.1|6636384_6636843_+	Hsp20 family protein	NA	E3SM62	Prochlorococcus_phage	37.1	1.5e-17
WP_011087987.1|6637009_6637936_+	RNA polymerase sigma factor RpoH	NA	A0A248SJA5	Salicola_phage	33.8	2.3e-33
WP_011087989.1|6638462_6638924_+	Hsp20 family protein	NA	A0A1B1IW69	uncultured_Mediterranean_phage	39.4	3.7e-24
WP_011087990.1|6639008_6639509_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA	NA
WP_011087991.1|6639581_6640697_+	trypsin-like peptidase domain-containing protein	NA	A0A1B1IT49	uncultured_Mediterranean_phage	26.4	2.9e-22
>prophage 11
NZ_CP029603	Bradyrhizobium diazoefficiens strain XF7 chromosome, complete genome	9270175	9165499	9201423	9270175	transposase,integrase	Klebsiella_phage(16.67%)	30	9155924:9155940	9170096:9170112
9155924:9155940	attL	TCATGGTGCTCGACGAC	NA	NA	NA	NA
WP_011090895.1|9165499_9166741_+|integrase	site-specific integrase	integrase	A0A248SL35	Klebsiella_phage	66.8	1.9e-160
WP_014498593.1|9166737_9168081_+	DUF1016 family protein	NA	Q9JMP5	Wolbachia_phage	55.5	6.2e-112
WP_011090897.1|9168082_9169336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090898.1|9169426_9171916_-	AAA family ATPase	NA	NA	NA	NA	NA
9170096:9170112	attR	GTCGTCGAGCACCATGA	NA	NA	NA	NA
WP_014498594.1|9171912_9172137_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498595.1|9172226_9173003_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_014498596.1|9173189_9173744_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014498597.1|9173862_9175650_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_011085265.1|9175690_9176800_+|transposase	IS630-like element ISBj5 family transposase	transposase	NA	NA	NA	NA
WP_014498598.1|9176810_9177575_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	49.0	4.7e-24
WP_011088795.1|9178133_9179198_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_009734588.1|9179455_9180040_-	DUF308 domain-containing protein	NA	NA	NA	NA	NA
WP_011090904.1|9180304_9180913_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014498601.1|9181072_9181720_+	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_011090906.1|9181824_9182703_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011090907.1|9182699_9183548_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_026192141.1|9183653_9184184_+	VOC family protein	NA	NA	NA	NA	NA
WP_016846434.1|9184471_9184756_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014498603.1|9185219_9185573_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498605.1|9187206_9187491_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_014498606.1|9187815_9188145_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_014498607.1|9188164_9189049_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498608.1|9189515_9190181_+	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA	NA
WP_016846553.1|9191295_9192369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090914.1|9194843_9196175_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA	NA
WP_011090915.1|9196107_9196944_-	porin family protein	NA	NA	NA	NA	NA
WP_011090916.1|9197387_9198056_+	AAA family ATPase	NA	A2I303	Vibrio_virus	32.7	1.5e-10
WP_011090917.1|9198018_9199056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090918.1|9199060_9199924_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	37.2	8.1e-33
WP_011090919.1|9199923_9201423_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	28.8	7.8e-15
