assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003184465.1_ASM318446v1	NZ_CP020818	Bordetella bronchiseptica strain F709 chromosome, complete genome	1	425088-425257	1	CRISPRCasFinder	no		csa3,DEDDh,DinG,PD-DExK,cas3	Orphan	GTGCCTGTCCCCGCGGGGACAGGC	24	0	0	NA	NA	NA	3	3	Orphan	csa3,DEDDh,DinG,PD-DExK,cas3	NA,NA	NA|350aa|up_9|NZ_CP020818.1_416820_417870_-	pfam04199, Cyclase, Putative cyclase	NA|275aa|up_8|NZ_CP020818.1_417866_418691_-	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|99aa|up_7|NZ_CP020818.1_418691_418988_-	PRK12863, PRK12863, YciI-like protein; Reviewed	NA|92aa|up_6|NZ_CP020818.1_419013_419289_-	TIGR03221, muco_delta, muconolactone delta-isomerase	NA|215aa|up_5|NZ_CP020818.1_419345_419990_-	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit	NA|229aa|up_4|NZ_CP020818.1_419989_420676_-	TIGR02429, 3-oxoadipate_CoA-transferase_subunit_A, 3-oxoacid CoA-transferase, A subunit	NA|284aa|up_3|NZ_CP020818.1_420805_421657_+	TIGR02431, p-hydroxybenzoate_hydroxylase_transcriptional, beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family	NA|242aa|up_2|NZ_CP020818.1_421707_422433_-	PRK07577, PRK07577, SDR family oxidoreductase	NA|447aa|up_1|NZ_CP020818.1_422464_423805_-	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism]	NA|311aa|up_0|NZ_CP020818.1_423917_424850_-	PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydrogenase; Validated	NA|932aa|down_0|NZ_CP020818.1_425307_428103_-	cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases	NA|983aa|down_1|NZ_CP020818.1_428708_431657_-	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|240aa|down_2|NZ_CP020818.1_431728_432448_+	pfam06508, QueC, Queuosine biosynthesis protein QueC	NA|183aa|down_3|NZ_CP020818.1_432486_433035_-	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|300aa|down_4|NZ_CP020818.1_433189_434089_+	COG4257, Vgb, Streptogramin lyase [Defense mechanisms]	NA|209aa|down_5|NZ_CP020818.1_434113_434740_-	pfam04299, FMN_bind_2, Putative FMN-binding domain	NA|309aa|down_6|NZ_CP020818.1_434762_435689_-	cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family	NA|529aa|down_7|NZ_CP020818.1_435697_437284_-	cd08517, PBP2_NikA_DppA_OppA_like_13, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|335aa|down_8|NZ_CP020818.1_437280_438285_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|287aa|down_9|NZ_CP020818.1_438484_439345_+	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain
GCF_003184465.1_ASM318446v1	NZ_CP020818	Bordetella bronchiseptica strain F709 chromosome, complete genome	2	1273512-1273586	2	CRISPRCasFinder	no		csa3,DEDDh,DinG,PD-DExK,cas3	Orphan	CGCCGCGCTGCACGGTGCCTGTCCC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,PD-DExK,cas3	NA|97aa|up_5|NZ_CP020818.1_1268780_1269071_-,NA|111aa|down_4|NZ_CP020818.1_1277949_1278282_+	NA|341aa|up_9|NZ_CP020818.1_1265835_1266858_-	cd13603, PBP2_TRAP_Siap_TeaA_like, Substrate-binding domain of a sialic acid binding Tripartite ATP-independent  Periplasmic transport system (SiaP) and related proteins; the type 2 periplasmic-binding protein fold	NA|207aa|up_8|NZ_CP020818.1_1266892_1267513_-	cd03022, DsbA_HCCA_Iso, DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway	NA|140aa|up_7|NZ_CP020818.1_1267563_1267983_-	TIGR02096, putative_cyclase, conserved hypothetical protein, steroid delta-isomerase-related	NA|176aa|up_6|NZ_CP020818.1_1268215_1268743_-	cd12108, Hr-like, Hemerythrin-like domain	NA|97aa|up_5|NZ_CP020818.1_1268780_1269071_-	NA	NA|212aa|up_4|NZ_CP020818.1_1269067_1269703_-	pfam09859, Oxygenase-NA, Oxygenase, catalyzing oxidative methylation of damaged DNA	NA|359aa|up_3|NZ_CP020818.1_1269699_1270776_-	PRK15435, PRK15435, bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	NA|220aa|up_2|NZ_CP020818.1_1270834_1271494_-	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|168aa|up_1|NZ_CP020818.1_1271595_1272099_-	cd07246, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|386aa|up_0|NZ_CP020818.1_1272266_1273424_-	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	NA|463aa|down_0|NZ_CP020818.1_1273763_1275152_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|336aa|down_1|NZ_CP020818.1_1275153_1276161_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|49aa|down_2|NZ_CP020818.1_1276171_1276318_+	pfam10617, DUF2474, Protein of unknown function (DUF2474)	NA|474aa|down_3|NZ_CP020818.1_1276334_1277756_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|111aa|down_4|NZ_CP020818.1_1277949_1278282_+	NA	NA|1054aa|down_5|NZ_CP020818.1_1278292_1281454_-	PRK14991, PRK14991, tetrathionate reductase subunit TtrA	NA|345aa|down_6|NZ_CP020818.1_1281480_1282515_-	PRK14992, PRK14992, tetrathionate reductase subunit TtrC	NA|258aa|down_7|NZ_CP020818.1_1282528_1283302_-	PRK14993, PRK14993, tetrathionate reductase subunit TtrB	NA|118aa|down_8|NZ_CP020818.1_1283617_1283971_+	cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands	NA|309aa|down_9|NZ_CP020818.1_1283993_1284920_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
GCF_003184465.1_ASM318446v1	NZ_CP020818	Bordetella bronchiseptica strain F709 chromosome, complete genome	3	1407009-1407139	3	CRISPRCasFinder	no		csa3,DEDDh,DinG,PD-DExK,cas3	Orphan	CTGTCCCCGCGGGGACAGGCACACTG	26	2	7	1407035-1407070|1407035-1407070|1407035-1407070|1407035-1407070|1407035-1407070|1407035-1407070|1407097-1407113	NZ_CP020818.1_731371-731336|NZ_CP020818.1_4811039-4811004|NZ_CP020818.1_1548940-1548975|NZ_CP020818.1_3581449-3581484|NZ_CP020818.1_1479859-1479824|NZ_CP020818.1_4860231-4860266|NZ_CP020818.1_2187611-2187595	NA	2	2	Orphan	csa3,DEDDh,DinG,PD-DExK,cas3	NA,NA|239aa|down_2|NZ_CP020818.1_1411936_1412653_+,NA|120aa|down_5|NZ_CP020818.1_1413510_1413870_+,NA|247aa|down_9|NZ_CP020818.1_1417734_1418475_+	NA|341aa|up_9|NZ_CP020818.1_1395237_1396260_-	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]	NA|476aa|up_8|NZ_CP020818.1_1396256_1397684_-	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|243aa|up_7|NZ_CP020818.1_1397840_1398569_+	cd03389, PAP2_lipid_A_1_phosphatase, PAP2_like proteins, Lipid A 1-phosphatase subfamily	NA|312aa|up_6|NZ_CP020818.1_1398859_1399795_-	PRK13022, secF, protein translocase subunit SecF	NA|627aa|up_5|NZ_CP020818.1_1399844_1401725_-	PRK05812, secD, preprotein translocase subunit SecD; Reviewed	NA|115aa|up_4|NZ_CP020818.1_1401791_1402136_-	PRK05585, yajC, preprotein translocase subunit YajC; Validated	NA|379aa|up_3|NZ_CP020818.1_1402280_1403417_-	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|358aa|up_2|NZ_CP020818.1_1403413_1404487_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|479aa|up_1|NZ_CP020818.1_1404644_1406081_+	COG2027, DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) [Cell envelope biogenesis, outer membrane]	NA|214aa|up_0|NZ_CP020818.1_1406171_1406813_+	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|920aa|down_0|NZ_CP020818.1_1407424_1410184_+	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain	NA|474aa|down_1|NZ_CP020818.1_1410250_1411672_-	PRK10637, cysG, siroheme synthase CysG	NA|239aa|down_2|NZ_CP020818.1_1411936_1412653_+	NA	NA|106aa|down_3|NZ_CP020818.1_1412737_1413055_+	pfam05957, DUF883, Bacterial protein of unknown function (DUF883)	NA|138aa|down_4|NZ_CP020818.1_1413095_1413509_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|120aa|down_5|NZ_CP020818.1_1413510_1413870_+	NA	NA|515aa|down_6|NZ_CP020818.1_1413912_1415457_-	PRK10922, PRK10922, 4-hydroxy-3-polyprenylbenzoate decarboxylase	NA|277aa|down_7|NZ_CP020818.1_1415540_1416371_+	cd00254, LT-like, lytic transglycosylase(LT)-like domain	NA|385aa|down_8|NZ_CP020818.1_1416405_1417560_-	PRK07337, PRK07337, pyridoxal phosphate-dependent aminotransferase	NA|247aa|down_9|NZ_CP020818.1_1417734_1418475_+	NA
GCF_003184465.1_ASM318446v1	NZ_CP020818	Bordetella bronchiseptica strain F709 chromosome, complete genome	4	1463604-1463702	4	CRISPRCasFinder	no		csa3,DEDDh,DinG,PD-DExK,cas3	Orphan	GCCGGTGCCAGTCCCCCTTGCGGGGACAGGCAC	33	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,PD-DExK,cas3	NA,NA	NA|397aa|up_9|NZ_CP020818.1_1453566_1454757_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|351aa|up_8|NZ_CP020818.1_1454761_1455814_+	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|341aa|up_7|NZ_CP020818.1_1455950_1456973_+	cd13692, PBP2_BztA, Substrate bindng domain of ABC glutamate/glutamine/aspartate/asparagine transporter; the type 2 periplasmic binding protein fold	NA|279aa|up_6|NZ_CP020818.1_1457064_1457901_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|302aa|up_5|NZ_CP020818.1_1458093_1458999_+	cd11592, Agmatinase_PAH, Agmatinase-like family includes proclavaminic acid amidinohydrolase	NA|264aa|up_4|NZ_CP020818.1_1459025_1459817_+	cd13530, PBP2_peptides_like, Peptide-binding protein and related homologs; type 2 periplasmic binding protein fold	NA|231aa|up_3|NZ_CP020818.1_1459839_1460532_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|251aa|up_2|NZ_CP020818.1_1460553_1461306_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|520aa|up_1|NZ_CP020818.1_1461434_1462994_+	PRK07586, PRK07586, acetolactate synthase large subunit	NA|182aa|up_0|NZ_CP020818.1_1463025_1463571_+	cd03454, YdeM, YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function	NA|419aa|down_0|NZ_CP020818.1_1463849_1465106_-	cd01151, GCD, Glutaryl-CoA dehydrogenase	NA|565aa|down_1|NZ_CP020818.1_1465122_1466817_-	PRK08199, PRK08199, thiamine pyrophosphate protein; Validated	NA|296aa|down_2|NZ_CP020818.1_1466974_1467862_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|311aa|down_3|NZ_CP020818.1_1467899_1468832_+	PRK00283, xerD, tyrosine recombinase	NA|163aa|down_4|NZ_CP020818.1_1468845_1469334_+	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|193aa|down_5|NZ_CP020818.1_1469453_1470032_+	cd03169, GATase1_PfpI_1, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus	NA|134aa|down_6|NZ_CP020818.1_1470104_1470506_+	COG4321, COG4321, Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis [General function prediction only]	NA|371aa|down_7|NZ_CP020818.1_1470512_1471625_-	PRK11669, pbpG, D-alanyl-D-alanine endopeptidase; Provisional	NA|401aa|down_8|NZ_CP020818.1_1472311_1473514_+	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters	NA|887aa|down_9|NZ_CP020818.1_1473717_1476378_+	TIGR03623, TIGR03623, probable DNA repair protein
GCF_003184465.1_ASM318446v1	NZ_CP020818	Bordetella bronchiseptica strain F709 chromosome, complete genome	5	2807102-2807212	5	CRISPRCasFinder	no		csa3,DEDDh,DinG,PD-DExK,cas3	Orphan	CCGCACGGGCGCCTGTCCCCGCAGG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,PD-DExK,cas3	NA,NA	NA|287aa|up_9|NZ_CP020818.1_2797313_2798174_-	PRK10611, PRK10611, protein-glutamate O-methyltransferase CheR	NA|569aa|up_8|NZ_CP020818.1_2798182_2799889_-	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional	NA|167aa|up_7|NZ_CP020818.1_2799962_2800463_-	PRK10612, PRK10612, chemotaxis protein CheW	NA|686aa|up_6|NZ_CP020818.1_2800477_2802535_-	PRK10547, PRK10547, chemotaxis protein CheA; Provisional	NA|127aa|up_5|NZ_CP020818.1_2802561_2802942_-	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins	NA|316aa|up_4|NZ_CP020818.1_2802956_2803904_-	PRK09041, motB, motility protein MotB	NA|292aa|up_3|NZ_CP020818.1_2803916_2804792_-	PRK09110, PRK09110, flagellar motor stator protein MotA	NA|187aa|up_2|NZ_CP020818.1_2804912_2805473_-	PRK12722, PRK12722, flagellar transcriptional regulator FlhC	NA|108aa|up_1|NZ_CP020818.1_2805507_2805831_-	PRK02909, PRK02909, flagellar transcriptional regulator FlhD	NA|246aa|up_0|NZ_CP020818.1_2806266_2807004_+	PRK06986, fliA, flagellar biosynthesis sigma factor; Validated	NA|392aa|down_0|NZ_CP020818.1_2807403_2808579_+	PRK06819, PRK06819, FliC/FljB family flagellin	NA|597aa|down_1|NZ_CP020818.1_2808801_2810592_-	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|559aa|down_2|NZ_CP020818.1_2810604_2812281_-	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed	NA|902aa|down_3|NZ_CP020818.1_2812293_2814999_-	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|585aa|down_4|NZ_CP020818.1_2815291_2817046_+	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|209aa|down_5|NZ_CP020818.1_2817042_2817669_+	COG4566, TtrR, Response regulator [Signal transduction mechanisms]	NA|284aa|down_6|NZ_CP020818.1_2817665_2818517_+	PRK14189, PRK14189, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA|705aa|down_7|NZ_CP020818.1_2818592_2820707_+	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP)	NA|328aa|down_8|NZ_CP020818.1_2821034_2822018_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|217aa|down_9|NZ_CP020818.1_2822141_2822792_+	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold
GCF_003184465.1_ASM318446v1	NZ_CP020818	Bordetella bronchiseptica strain F709 chromosome, complete genome	6	4053926-4054007	6	CRISPRCasFinder	no		csa3,DEDDh,DinG,PD-DExK,cas3	Orphan	CTGTCCCCGCCGGGACAGGCACC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,PD-DExK,cas3	NA|125aa|up_1|NZ_CP020818.1_4050370_4050745_-,NA|81aa|down_4|NZ_CP020818.1_4058336_4058579_-	NA|327aa|up_9|NZ_CP020818.1_4043690_4044671_-	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins	NA|419aa|up_8|NZ_CP020818.1_4044869_4046126_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|142aa|up_7|NZ_CP020818.1_4046328_4046754_+	pfam08897, DUF1841, Domain of unknown function (DUF1841)	NA|121aa|up_6|NZ_CP020818.1_4046804_4047167_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|118aa|up_5|NZ_CP020818.1_4047179_4047533_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|296aa|up_4|NZ_CP020818.1_4047693_4048581_+	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|391aa|up_3|NZ_CP020818.1_4048602_4049775_+	COG3825, COG3825, Uncharacterized protein conserved in bacteria [Function unknown]	NA|185aa|up_2|NZ_CP020818.1_4049778_4050333_-	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|125aa|up_1|NZ_CP020818.1_4050370_4050745_-	NA	NA|917aa|up_0|NZ_CP020818.1_4051078_4053829_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|374aa|down_0|NZ_CP020818.1_4054014_4055136_-	PRK10767, PRK10767, chaperone protein DnaJ; Provisional	NA|642aa|down_1|NZ_CP020818.1_4055236_4057162_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|127aa|down_2|NZ_CP020818.1_4057252_4057633_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|185aa|down_3|NZ_CP020818.1_4057640_4058195_-	PRK14139, PRK14139, heat shock protein GrpE; Provisional	NA|81aa|down_4|NZ_CP020818.1_4058336_4058579_-	NA	NA|363aa|down_5|NZ_CP020818.1_4058660_4059749_-	PRK00035, hemH, ferrochelatase; Reviewed	NA|335aa|down_6|NZ_CP020818.1_4059806_4060811_-	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|300aa|down_7|NZ_CP020818.1_4060925_4061825_+	PRK02155, ppnK, NAD kinase	NA|554aa|down_8|NZ_CP020818.1_4061840_4063502_+	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|140aa|down_9|NZ_CP020818.1_4063979_4064399_-	pfam01475, FUR, Ferric uptake regulator family
GCF_003184465.1_ASM318446v1	NZ_CP020818	Bordetella bronchiseptica strain F709 chromosome, complete genome	7	4568334-4568428	7	CRISPRCasFinder	no	DEDDh	csa3,DEDDh,DinG,PD-DExK,cas3	Unclear	GTGCCTGTCCCCGCCGGGACAGGCAC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,PD-DExK,cas3	NA,NA	NA|398aa|up_9|NZ_CP020818.1_4556752_4557946_-	PRK06954, PRK06954, acetyl-CoA C-acetyltransferase	NA|343aa|up_8|NZ_CP020818.1_4558012_4559041_-	pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain	NA|387aa|up_7|NZ_CP020818.1_4559067_4560228_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|326aa|up_6|NZ_CP020818.1_4560365_4561343_+	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|324aa|up_5|NZ_CP020818.1_4561353_4562325_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|262aa|up_4|NZ_CP020818.1_4562391_4563177_-	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein	NA|411aa|up_3|NZ_CP020818.1_4563169_4564402_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|252aa|up_2|NZ_CP020818.1_4564598_4565354_-	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|173aa|up_1|NZ_CP020818.1_4565464_4565983_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|708aa|up_0|NZ_CP020818.1_4565979_4568103_-	PRK00007, PRK00007, elongation factor G; Reviewed	NA|157aa|down_0|NZ_CP020818.1_4568500_4568971_-	pfam00582, Usp, Universal stress protein family	NA|115aa|down_1|NZ_CP020818.1_4569059_4569404_-	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|467aa|down_2|NZ_CP020818.1_4569503_4570904_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|305aa|down_3|NZ_CP020818.1_4571092_4572007_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|220aa|down_4|NZ_CP020818.1_4572003_4572663_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|308aa|down_5|NZ_CP020818.1_4572752_4573676_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|152aa|down_6|NZ_CP020818.1_4573681_4574137_-	COG4125, COG4125, Predicted membrane protein [Function unknown]	NA|368aa|down_7|NZ_CP020818.1_4574133_4575237_-	cd10807, YdjC_like_3, uncharacterized YdjC-like family proteins from bacteria	NA|90aa|down_8|NZ_CP020818.1_4575195_4575465_+	pfam04138, GtrA, GtrA-like protein	NA|540aa|down_9|NZ_CP020818.1_4575424_4577044_-	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]
GCF_003184465.1_ASM318446v1	NZ_CP020818	Bordetella bronchiseptica strain F709 chromosome, complete genome	8	5033454-5033549	8	CRISPRCasFinder	no		csa3,DEDDh,DinG,PD-DExK,cas3	Orphan	TGACGGCCAAGACGGTATCCGCCCC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,PD-DExK,cas3	NA,NA|132aa|down_8|NZ_CP020818.1_5042134_5042530_+	NA|608aa|up_9|NZ_CP020818.1_5020923_5022747_-	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|295aa|up_8|NZ_CP020818.1_5022743_5023628_-	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|403aa|up_7|NZ_CP020818.1_5023697_5024906_-	cd06335, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions	NA|466aa|up_6|NZ_CP020818.1_5024980_5026378_-	pfam03972, MmgE_PrpD, MmgE/PrpD family	NA|498aa|up_5|NZ_CP020818.1_5026398_5027892_-	PRK06145, PRK06145, acyl-CoA synthetase; Validated	NA|392aa|up_4|NZ_CP020818.1_5027971_5029147_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|422aa|up_3|NZ_CP020818.1_5029152_5030418_-	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|262aa|up_2|NZ_CP020818.1_5030421_5031207_-	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]	NA|325aa|up_1|NZ_CP020818.1_5031221_5032196_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|324aa|up_0|NZ_CP020818.1_5032197_5033169_-	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)	NA|262aa|down_0|NZ_CP020818.1_5033623_5034409_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|259aa|down_1|NZ_CP020818.1_5034485_5035262_-	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily	NA|711aa|down_2|NZ_CP020818.1_5035258_5037391_-	TIGR02717, Uncharacterized_protein_MJ0590, acetyl coenzyme A synthetase (ADP forming), alpha domain	NA|331aa|down_3|NZ_CP020818.1_5037392_5038385_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|383aa|down_4|NZ_CP020818.1_5038632_5039781_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|269aa|down_5|NZ_CP020818.1_5039777_5040584_+	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]	NA|385aa|down_6|NZ_CP020818.1_5040580_5041735_+	cd00829, SCP-x_thiolase, Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2  has multiple roles in intracellular lipid circulation and metabolism	NA|134aa|down_7|NZ_CP020818.1_5041736_5042138_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|132aa|down_8|NZ_CP020818.1_5042134_5042530_+	NA	NA|131aa|down_9|NZ_CP020818.1_5042526_5042919_+	cd03441, R_hydratase_like, (R)-hydratase [(R)-specific enoyl-CoA hydratase]
