assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003193885.1_ASM319388v1	NZ_CP029658	Staphylococcus aureus strain AR_0467 chromosome, complete genome	1	378211-378344	1	PILER-CR	no		WYL,RT,csa3,DEDDh,DinG,cas3	Orphan	TATTGAAGAAGATACAA	17	2	2	378228-378273|378291-378327	NZ_CP029658.1_374578-374623|NZ_CP029658.1_374641-374677	NA	2	2	Orphan	WYL,RT,csa3,DEDDh,DinG,cas3	NA|67aa|up_1|NZ_CP029658.1_371754_371955_+,NA|78aa|down_5|NZ_CP029658.1_386661_386895_+,NA|103aa|down_6|NZ_CP029658.1_387002_387311_-,NA|89aa|down_7|NZ_CP029658.1_387454_387721_-	NA|426aa|up_9|NZ_CP029658.1_361751_363029_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_8|NZ_CP029658.1_363505_365329_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_7|NZ_CP029658.1_365467_365884_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_6|NZ_CP029658.1_366114_366807_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_5|NZ_CP029658.1_366971_367736_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_4|NZ_CP029658.1_367888_368569_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_3|NZ_CP029658.1_368592_370146_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_2|NZ_CP029658.1_370262_371621_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|67aa|up_1|NZ_CP029658.1_371754_371955_+	NA	NA|1039aa|up_0|NZ_CP029658.1_372089_375206_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_0|NZ_CP029658.1_378952_379819_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|248aa|down_1|NZ_CP029658.1_380029_380773_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|119aa|down_2|NZ_CP029658.1_381096_381453_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|1116aa|down_3|NZ_CP029658.1_381757_385105_+	pfam18483, Bact_lectin, Bacterial lectin	NA|359aa|down_4|NZ_CP029658.1_385488_386565_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|78aa|down_5|NZ_CP029658.1_386661_386895_+	NA	NA|103aa|down_6|NZ_CP029658.1_387002_387311_-	NA	NA|89aa|down_7|NZ_CP029658.1_387454_387721_-	NA	NA|603aa|down_8|NZ_CP029658.1_388004_389813_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_9|NZ_CP029658.1_389944_390337_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)
GCF_003193885.1_ASM319388v1	NZ_CP029658	Staphylococcus aureus strain AR_0467 chromosome, complete genome	2	453758-453836	1	CRISPRCasFinder	no		WYL,RT,csa3,DEDDh,DinG,cas3	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	1	4	453781-453813|453781-453813|453781-453813|453781-453813	NZ_CP029658.1_2180662-2180694|NZ_CP029658.1_2216881-2216913|NZ_CP029658.1_888318-888286|NZ_CP029658.1_2216937-2216969	NA	1	1	Orphan	WYL,RT,csa3,DEDDh,DinG,cas3	NA|220aa|up_3|NZ_CP029658.1_450682_451342_-,NA|36aa|up_0|NZ_CP029658.1_453331_453439_+,NA	NA|499aa|up_9|NZ_CP029658.1_439446_440943_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|610aa|up_8|NZ_CP029658.1_441174_443004_+	pfam13520, AA_permease_2, Amino acid permease	NA|269aa|up_7|NZ_CP029658.1_447055_447862_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_6|NZ_CP029658.1_447924_448581_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_5|NZ_CP029658.1_448693_449167_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_4|NZ_CP029658.1_449289_450501_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_3|NZ_CP029658.1_450682_451342_-	NA	NA|381aa|up_2|NZ_CP029658.1_451401_452544_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_CP029658.1_452811_453198_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_CP029658.1_453331_453439_+	NA	NA|588aa|down_0|NZ_CP029658.1_454141_455905_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_CP029658.1_455929_457663_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|229aa|down_2|NZ_CP029658.1_458115_458802_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_3|NZ_CP029658.1_458779_460138_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_4|NZ_CP029658.1_460139_461147_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_5|NZ_CP029658.1_461124_462240_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_6|NZ_CP029658.1_462250_462943_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_7|NZ_CP029658.1_462953_463421_+	pfam06177, QueT, QueT transporter	NA|326aa|down_8|NZ_CP029658.1_463472_464450_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|down_9|NZ_CP029658.1_464451_465399_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family
GCF_003193885.1_ASM319388v1	NZ_CP029658	Staphylococcus aureus strain AR_0467 chromosome, complete genome	3	618588-618668	2	CRISPRCasFinder	no		WYL,RT,csa3,DEDDh,DinG,cas3	Orphan	CAAGTTGGCGGGGCCCCAACACAGA	25	1	13	618613-618643|618613-618643|618613-618643|618613-618643|618613-618643|618613-618643|618613-618643|618613-618643|618613-618643|618613-618643|618613-618643|618613-618643|618613-618643	NZ_CP029658.1_2216941-2216971|NZ_CP029658.1_50195-50225|NZ_CP029658.1_1014586-1014616|NZ_CP029658.1_1331838-1331808|NZ_CP029658.1_1573467-1573497|NZ_CP029658.1_1573583-1573613|NZ_CP029658.1_1662047-1662017|NZ_CP029658.1_1868124-1868094|NZ_CP029658.1_1970617-1970647|NZ_CP029658.1_2180666-2180696|NZ_CP029658.1_2216885-2216915|NZ_CP029658.1_2396069-2396039|NZ_CP029658.1_2662855-2662825	NA	1	1	Orphan	WYL,RT,csa3,DEDDh,DinG,cas3	NA,NA|62aa|down_0|NZ_CP029658.1_618709_618895_-,NA|84aa|down_5|NZ_CP029658.1_622034_622286_-,NA|106aa|down_8|NZ_CP029658.1_627407_627725_-,NA|55aa|down_9|NZ_CP029658.1_627969_628134_-	NA|202aa|up_9|NZ_CP029658.1_611480_612086_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP029658.1_612255_613260_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP029658.1_613290_613797_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP029658.1_613798_614293_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP029658.1_614355_615615_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP029658.1_615611_616097_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP029658.1_616110_616557_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP029658.1_616562_616796_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP029658.1_616802_617402_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP029658.1_617421_618444_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|62aa|down_0|NZ_CP029658.1_618709_618895_-	NA	NA|117aa|down_1|NZ_CP029658.1_619020_619371_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP029658.1_619472_620684_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP029658.1_620676_621117_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP029658.1_621278_622043_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP029658.1_622034_622286_-	NA	NA|422aa|down_6|NZ_CP029658.1_622674_623940_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP029658.1_624056_627224_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP029658.1_627407_627725_-	NA	NA|55aa|down_9|NZ_CP029658.1_627969_628134_-	NA
GCF_003193885.1_ASM319388v1	NZ_CP029658	Staphylococcus aureus strain AR_0467 chromosome, complete genome	4	770743-770828	3	CRISPRCasFinder	no	csa3	WYL,RT,csa3,DEDDh,DinG,cas3	Type I-A	ACTAATGATACGCAAAAATCAGTTGG	26	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,csa3,DEDDh,DinG,cas3	NA,NA|53aa|down_6|NZ_CP029658.1_781792_781951_-,NA|35aa|down_7|NZ_CP029658.1_782630_782735_+,NA|364aa|down_8|NZ_CP029658.1_783167_784259_-	NA|396aa|up_9|NZ_CP029658.1_746001_747189_+	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	NA|228aa|up_8|NZ_CP029658.1_747207_747891_+	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|448aa|up_7|NZ_CP029658.1_748067_749411_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|up_6|NZ_CP029658.1_749509_749983_+	pfam17080, SepA, Multidrug Resistance efflux pump	NA|490aa|up_5|NZ_CP029658.1_750305_751775_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|355aa|up_4|NZ_CP029658.1_751895_752960_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|303aa|up_3|NZ_CP029658.1_759186_760095_+	cd09989, Arginase, Arginase family	NA|270aa|up_2|NZ_CP029658.1_760283_761093_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|311aa|up_1|NZ_CP029658.1_761094_762027_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|452aa|up_0|NZ_CP029658.1_762053_763409_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|369aa|down_0|NZ_CP029658.1_771450_772557_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|down_1|NZ_CP029658.1_772556_772991_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|down_2|NZ_CP029658.1_773002_775135_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|602aa|down_3|NZ_CP029658.1_777390_779196_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|down_4|NZ_CP029658.1_779427_780210_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|down_5|NZ_CP029658.1_780277_781135_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|down_6|NZ_CP029658.1_781792_781951_-	NA	NA|35aa|down_7|NZ_CP029658.1_782630_782735_+	NA	NA|364aa|down_8|NZ_CP029658.1_783167_784259_-	NA	NA|326aa|down_9|NZ_CP029658.1_784524_785502_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
GCF_003193885.1_ASM319388v1	NZ_CP029658	Staphylococcus aureus strain AR_0467 chromosome, complete genome	5	783070-783151	4	CRISPRCasFinder	no	csa3	WYL,RT,csa3,DEDDh,DinG,cas3	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,csa3,DEDDh,DinG,cas3	NA|53aa|up_1|NZ_CP029658.1_781792_781951_-,NA|35aa|up_0|NZ_CP029658.1_782630_782735_+,NA|364aa|down_0|NZ_CP029658.1_783167_784259_-,NA|77aa|down_5|NZ_CP029658.1_788045_788276_+	NA|452aa|up_9|NZ_CP029658.1_762053_763409_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|2482aa|up_8|NZ_CP029658.1_763686_771132_+	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|369aa|up_7|NZ_CP029658.1_771450_772557_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_6|NZ_CP029658.1_772556_772991_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_5|NZ_CP029658.1_773002_775135_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|602aa|up_4|NZ_CP029658.1_777390_779196_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_3|NZ_CP029658.1_779427_780210_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_2|NZ_CP029658.1_780277_781135_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|up_1|NZ_CP029658.1_781792_781951_-	NA	NA|35aa|up_0|NZ_CP029658.1_782630_782735_+	NA	NA|364aa|down_0|NZ_CP029658.1_783167_784259_-	NA	NA|326aa|down_1|NZ_CP029658.1_784524_785502_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP029658.1_785503_785824_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP029658.1_785975_786641_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP029658.1_787076_788015_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP029658.1_788045_788276_+	NA	NA|458aa|down_6|NZ_CP029658.1_788947_790321_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP029658.1_790777_791191_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP029658.1_791390_791834_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP029658.1_791954_792665_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_003193885.1_ASM319388v1	NZ_CP029658	Staphylococcus aureus strain AR_0467 chromosome, complete genome	6	912304-912385	5	CRISPRCasFinder	no		WYL,RT,csa3,DEDDh,DinG,cas3	Orphan	ACAATGCAAGTTGGGGTGGGGGCC	24	1	5	912328-912361|912328-912361|912328-912361|912328-912361|912328-912361	NZ_CP029658.1_1873720-1873687|NZ_CP029658.1_2229682-2229715|NZ_CP029658.1_1219929-1219896|NZ_CP029658.1_179820-179853|NZ_CP029658.1_1657599-1657632	NA	1	1	Orphan	WYL,RT,csa3,DEDDh,DinG,cas3	NA,NA|61aa|down_4|NZ_CP029658.1_919496_919679_-,NA|148aa|down_9|NZ_CP029658.1_922152_922596_+	NA|48aa|up_9|NZ_CP029658.1_902488_902632_-	smart00794, AgrD, Staphylococcal AgrD protein	NA|188aa|up_8|NZ_CP029658.1_902634_903198_-	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|45aa|up_7|NZ_CP029658.1_903433_903568_+	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|262aa|up_6|NZ_CP029658.1_904167_904953_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|209aa|up_5|NZ_CP029658.1_905313_905940_-	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|420aa|up_4|NZ_CP029658.1_906136_907396_+	PRK10819, PRK10819, transport protein TonB; Provisional	NA|248aa|up_3|NZ_CP029658.1_907420_908164_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|up_2|NZ_CP029658.1_908338_908623_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|539aa|up_1|NZ_CP029658.1_908698_910315_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|436aa|up_0|NZ_CP029658.1_910854_912162_-	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|408aa|down_0|NZ_CP029658.1_912605_913829_-	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|339aa|down_1|NZ_CP029658.1_915341_916358_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|346aa|down_2|NZ_CP029658.1_917476_918514_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|238aa|down_3|NZ_CP029658.1_918704_919418_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|61aa|down_4|NZ_CP029658.1_919496_919679_-	NA	NA|62aa|down_5|NZ_CP029658.1_919749_919935_-	pfam00815, Histidinol_dh, Histidinol dehydrogenase	NA|285aa|down_6|NZ_CP029658.1_920151_921006_-	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|239aa|down_7|NZ_CP029658.1_921017_921734_-	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|81aa|down_8|NZ_CP029658.1_921897_922140_+	pfam05339, DUF739, Protein of unknown function (DUF739)	NA|148aa|down_9|NZ_CP029658.1_922152_922596_+	NA
GCF_003193885.1_ASM319388v1	NZ_CP029658	Staphylococcus aureus strain AR_0467 chromosome, complete genome	7	1346418-1346502	6	CRISPRCasFinder	no		WYL,RT,csa3,DEDDh,DinG,cas3	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	2	1346444-1346476|1346444-1346476	NZ_CP029658.1_1662005-1661973|NZ_CP029658.1_2224124-2224156	NA	1	1	Orphan	WYL,RT,csa3,DEDDh,DinG,cas3	NA,NA	NA|97aa|up_9|NZ_CP029658.1_1336754_1337045_+	COG1534, COG1534, Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]	NA|195aa|up_8|NZ_CP029658.1_1337606_1338191_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|118aa|up_7|NZ_CP029658.1_1338191_1338545_+	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|239aa|up_6|NZ_CP029658.1_1338547_1339264_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|229aa|up_5|NZ_CP029658.1_1339303_1339990_+	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|154aa|up_4|NZ_CP029658.1_1340081_1340543_+	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|716aa|up_3|NZ_CP029658.1_1340601_1342749_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|325aa|up_2|NZ_CP029658.1_1342805_1343780_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|84aa|up_1|NZ_CP029658.1_1343824_1344076_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|608aa|up_0|NZ_CP029658.1_1344421_1346245_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|375aa|down_0|NZ_CP029658.1_1346810_1347935_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|326aa|down_1|NZ_CP029658.1_1348035_1349013_+	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|209aa|down_2|NZ_CP029658.1_1349044_1349671_+	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|611aa|down_3|NZ_CP029658.1_1349739_1351572_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|380aa|down_4|NZ_CP029658.1_1351707_1352847_+	PRK14280, PRK14280, molecular chaperone DnaJ	NA|313aa|down_5|NZ_CP029658.1_1352850_1353789_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|251aa|down_6|NZ_CP029658.1_1353790_1354543_+	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|449aa|down_7|NZ_CP029658.1_1354549_1355896_+	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|59aa|down_8|NZ_CP029658.1_1356188_1356365_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|228aa|down_9|NZ_CP029658.1_1356608_1357292_+	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
GCF_003193885.1_ASM319388v1	NZ_CP029658	Staphylococcus aureus strain AR_0467 chromosome, complete genome	8	2180951-2181032	7	CRISPRCasFinder	no		WYL,RT,csa3,DEDDh,DinG,cas3	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	1	2180975-2181008	NZ_CP029658.1_1662006-1661973	NA	1	1	Orphan	WYL,RT,csa3,DEDDh,DinG,cas3	NA,NA|38aa|down_1|NZ_CP029658.1_2182015_2182129_-	NA|417aa|up_9|NZ_CP029658.1_2171378_2172629_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP029658.1_2172734_2174042_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP029658.1_2174139_2174901_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP029658.1_2175228_2176080_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP029658.1_2176313_2176508_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP029658.1_2176861_2177683_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP029658.1_2177700_2178396_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP029658.1_2178388_2179414_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP029658.1_2179663_2179960_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP029658.1_2179952_2180339_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP029658.1_2181135_2182014_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|NZ_CP029658.1_2182015_2182129_-	NA	NA|127aa|down_2|NZ_CP029658.1_2182192_2182573_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|NZ_CP029658.1_2182730_2183087_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|NZ_CP029658.1_2183230_2183551_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|NZ_CP029658.1_2183701_2184241_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|NZ_CP029658.1_2184323_2185040_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|NZ_CP029658.1_2185187_2185610_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|NZ_CP029658.1_2186008_2186503_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|NZ_CP029658.1_2186657_2187275_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCF_003193885.1_ASM319388v1	NZ_CP029658	Staphylococcus aureus strain AR_0467 chromosome, complete genome	9	2229636-2229714	8	CRISPRCasFinder	no	cas3	WYL,RT,csa3,DEDDh,DinG,cas3	Unclear	AGAATTTCGAAAAGAAATTCTACA	24	0	0	NA	NA	NA	1	1	Unclear	WYL,RT,csa3,DEDDh,DinG,cas3	NA,NA|36aa|down_5|NZ_CP029658.1_2237192_2237300_-,NA|35aa|down_7|NZ_CP029658.1_2238732_2238837_-	NA|301aa|up_9|NZ_CP029658.1_2218517_2219420_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_8|NZ_CP029658.1_2219662_2220250_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_7|NZ_CP029658.1_2220813_2221758_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_6|NZ_CP029658.1_2221868_2222864_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_5|NZ_CP029658.1_2222860_2223772_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|up_4|NZ_CP029658.1_2224657_2225593_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_3|NZ_CP029658.1_2225659_2227099_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_2|NZ_CP029658.1_2227106_2227592_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|up_1|NZ_CP029658.1_2227599_2228439_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_0|NZ_CP029658.1_2228444_2229377_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_0|NZ_CP029658.1_2230040_2232887_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_1|NZ_CP029658.1_2232894_2234880_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_2|NZ_CP029658.1_2235148_2235385_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_3|NZ_CP029658.1_2235381_2236032_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_4|NZ_CP029658.1_2236205_2237045_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|36aa|down_5|NZ_CP029658.1_2237192_2237300_-	NA	NA|370aa|down_6|NZ_CP029658.1_2237453_2238564_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|35aa|down_7|NZ_CP029658.1_2238732_2238837_-	NA	NA|844aa|down_8|NZ_CP029658.1_2238878_2241410_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_9|NZ_CP029658.1_2241823_2242396_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]
GCF_003193885.1_ASM319388v1	NZ_CP029658	Staphylococcus aureus strain AR_0467 chromosome, complete genome	10	2624016-2624118	9	CRISPRCasFinder	no		WYL,RT,csa3,DEDDh,DinG,cas3	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,csa3,DEDDh,DinG,cas3	NA|179aa|up_7|NZ_CP029658.1_2615634_2616171_+,NA|221aa|up_1|NZ_CP029658.1_2622262_2622925_+,NA|33aa|down_0|NZ_CP029658.1_2624793_2624892_-,NA|128aa|down_6|NZ_CP029658.1_2631139_2631523_+,NA|70aa|down_8|NZ_CP029658.1_2632347_2632557_+	NA|91aa|up_9|NZ_CP029658.1_2613867_2614140_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|NZ_CP029658.1_2614538_2615243_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_7|NZ_CP029658.1_2615634_2616171_+	NA	NA|514aa|up_6|NZ_CP029658.1_2616283_2617825_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|NZ_CP029658.1_2617849_2619316_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|NZ_CP029658.1_2619353_2620622_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|NZ_CP029658.1_2620621_2621200_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|NZ_CP029658.1_2621712_2622120_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|NZ_CP029658.1_2622262_2622925_+	NA	NA|319aa|up_0|NZ_CP029658.1_2623042_2623999_+	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|33aa|down_0|NZ_CP029658.1_2624793_2624892_-	NA	NA|463aa|down_1|NZ_CP029658.1_2624976_2626365_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_2|NZ_CP029658.1_2626444_2627200_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_3|NZ_CP029658.1_2627691_2628261_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_4|NZ_CP029658.1_2628276_2629800_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|209aa|down_5|NZ_CP029658.1_2630243_2630870_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_6|NZ_CP029658.1_2631139_2631523_+	NA	NA|194aa|down_7|NZ_CP029658.1_2631588_2632170_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|70aa|down_8|NZ_CP029658.1_2632347_2632557_+	NA	NA|84aa|down_9|NZ_CP029658.1_2632595_2632847_-	COG2261, COG2261, Predicted membrane protein [Function unknown]
