assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003193965.1_ASM319396v1	NZ_CP029667	Staphylococcus aureus strain AR_0225 chromosome, complete genome	1	423466-423659	1	CRT	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	3	13	423489-423521|423489-423521|423489-423521|423489-423521|423545-423580|423545-423580|423545-423580|423545-423580|423604-423636|423604-423636|423604-423636|423604-423636|423604-423636	NZ_CP029667.1_147703-147735|NZ_CP029667.1_1465846-1465814|NZ_CP029667.1_1673991-1673959|NZ_CP029667.1_1984023-1984055|NZ_CP029667.1_1674047-1674012|NZ_CP029667.1_981283-981248|NZ_CP029667.1_771635-771670|NZ_CP029667.1_1159759-1159794|NZ_CP029667.1_147703-147735|NZ_CP029667.1_1376531-1376563|NZ_CP029667.1_1465846-1465814|NZ_CP029667.1_1673991-1673959|NZ_CP029667.1_1984023-1984055	NA	3	3	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA,NA|57aa|down_0|NZ_CP029667.1_423718_423889_-,NA|84aa|down_5|NZ_CP029667.1_427028_427280_-,NA|106aa|down_8|NZ_CP029667.1_432404_432722_-,NA|55aa|down_9|NZ_CP029667.1_432966_433131_-	NA|202aa|up_9|NZ_CP029667.1_416360_416966_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP029667.1_417135_418140_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP029667.1_418170_418677_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP029667.1_418678_419173_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP029667.1_419235_420495_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP029667.1_420491_420977_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP029667.1_420990_421437_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP029667.1_421442_421676_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP029667.1_421682_422282_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP029667.1_422301_423324_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|57aa|down_0|NZ_CP029667.1_423718_423889_-	NA	NA|117aa|down_1|NZ_CP029667.1_424014_424365_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP029667.1_424466_425678_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP029667.1_425670_426111_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP029667.1_426272_427037_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP029667.1_427028_427280_-	NA	NA|422aa|down_6|NZ_CP029667.1_427668_428934_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP029667.1_429050_432218_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP029667.1_432404_432722_-	NA	NA|55aa|down_9|NZ_CP029667.1_432966_433131_-	NA
GCF_003193965.1_ASM319396v1	NZ_CP029667	Staphylococcus aureus strain AR_0225 chromosome, complete genome	2	547399-547549	1	CRISPRCasFinder	no	csa3	WYL,csa3,DEDDh,cas3,DinG	Type I-A	TGCATAAGAGCCCCTAACAACTAAAGTT	28	0	0	NA	NA	NA	2	2	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|31aa|up_2|NZ_CP029667.1_544758_544851_-,NA|35aa|up_0|NZ_CP029667.1_546962_547067_+,NA|364aa|down_0|NZ_CP029667.1_547566_548658_-,NA|77aa|down_5|NZ_CP029667.1_552446_552677_+	NA|369aa|up_9|NZ_CP029667.1_534371_535478_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_8|NZ_CP029667.1_535477_535912_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_7|NZ_CP029667.1_535923_538056_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_6|NZ_CP029667.1_538090_539629_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_5|NZ_CP029667.1_540309_542115_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_4|NZ_CP029667.1_542346_543129_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_3|NZ_CP029667.1_543196_544054_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_2|NZ_CP029667.1_544758_544851_-	NA	NA|379aa|up_1|NZ_CP029667.1_545139_546276_+	pfam02037, SAP, SAP domain	NA|35aa|up_0|NZ_CP029667.1_546962_547067_+	NA	NA|364aa|down_0|NZ_CP029667.1_547566_548658_-	NA	NA|327aa|down_1|NZ_CP029667.1_548923_549904_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP029667.1_549905_550226_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP029667.1_550377_551043_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP029667.1_551477_552416_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP029667.1_552446_552677_+	NA	NA|458aa|down_6|NZ_CP029667.1_553348_554722_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP029667.1_555179_555593_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP029667.1_555792_556236_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP029667.1_556356_557067_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_003193965.1_ASM319396v1	NZ_CP029667	Staphylococcus aureus strain AR_0225 chromosome, complete genome	3	782359-782437	2	CRISPRCasFinder	no	DEDDh	WYL,csa3,DEDDh,cas3,DinG	Unclear	TGCAGGTTGGCGGGGCCCCAACA	23	1	6	782382-782414|782382-782414|782382-782414|782382-782414|782382-782414|782382-782414	NZ_CP029667.1_147703-147735|NZ_CP029667.1_1159701-1159733|NZ_CP029667.1_1465846-1465814|NZ_CP029667.1_1673991-1673959|NZ_CP029667.1_1984023-1984055|NZ_CP029667.1_1376531-1376563	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|31aa|up_6|NZ_CP029667.1_777024_777117_+,NA|37aa|up_2|NZ_CP029667.1_780122_780233_+,NA|138aa|up_1|NZ_CP029667.1_780261_780675_+,NA|129aa|down_1|NZ_CP029667.1_783594_783981_+,NA|92aa|down_6|NZ_CP029667.1_787966_788242_-	NA|177aa|up_9|NZ_CP029667.1_774340_774871_+	pfam11667, DUF3267, Putative zincin peptidase	NA|357aa|up_8|NZ_CP029667.1_775117_776188_+	PRK02406, PRK02406, DNA polymerase IV; Validated	DEDDh|185aa|up_7|NZ_CP029667.1_776255_776810_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|31aa|up_6|NZ_CP029667.1_777024_777117_+	NA	NA|167aa|up_5|NZ_CP029667.1_777198_777699_-	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|438aa|up_4|NZ_CP029667.1_777990_779304_+	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|244aa|up_3|NZ_CP029667.1_779305_780037_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|37aa|up_2|NZ_CP029667.1_780122_780233_+	NA	NA|138aa|up_1|NZ_CP029667.1_780261_780675_+	NA	NA|329aa|up_0|NZ_CP029667.1_781105_782092_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|253aa|down_0|NZ_CP029667.1_782619_783378_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|129aa|down_1|NZ_CP029667.1_783594_783981_+	NA	NA|234aa|down_2|NZ_CP029667.1_783995_784697_+	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|348aa|down_3|NZ_CP029667.1_784693_785737_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|210aa|down_4|NZ_CP029667.1_785726_786356_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_5|NZ_CP029667.1_786471_787689_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|92aa|down_6|NZ_CP029667.1_787966_788242_-	NA	NA|155aa|down_7|NZ_CP029667.1_788248_788713_-	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|67aa|down_8|NZ_CP029667.1_788859_789060_+	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|419aa|down_9|NZ_CP029667.1_789062_790319_+	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)
GCF_003193965.1_ASM319396v1	NZ_CP029667	Staphylococcus aureus strain AR_0225 chromosome, complete genome	4	1891712-1892020	2,3	CRT,CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	CCAACTTGCANNNTNTNNNNAGCTGNCTTT,CCAGCCTCTGTGTTGGGGCCCCG	30,23	3	4	1891825-1891850|1891825-1891850|1891939-1891964|1891965-1891997	NZ_CP029667.1_1984035-1984010|NZ_CP029667.1_2442828-2442853|NZ_CP029667.1_2021074-2021099|NZ_CP029667.1_1940520-1940488	NA:NA	4,1	4	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA,NA	NA|301aa|up_9|NZ_CP029667.1_1875836_1876739_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|NZ_CP029667.1_1876904_1880558_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|NZ_CP029667.1_1880558_1884035_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|NZ_CP029667.1_1884194_1884770_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|NZ_CP029667.1_1884785_1885310_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|NZ_CP029667.1_1885314_1885890_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|NZ_CP029667.1_1886214_1887546_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|NZ_CP029667.1_1887896_1889102_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|NZ_CP029667.1_1889091_1890471_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|NZ_CP029667.1_1890712_1891642_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|NZ_CP029667.1_1892144_1893389_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|NZ_CP029667.1_1893497_1894688_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|NZ_CP029667.1_1894995_1896123_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|NZ_CP029667.1_1896484_1896862_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|NZ_CP029667.1_1897277_1897871_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|NZ_CP029667.1_1897934_1898318_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|NZ_CP029667.1_1898448_1900854_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|NZ_CP029667.1_1900846_1901275_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|110aa|down_8|NZ_CP029667.1_1901286_1901616_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|NZ_CP029667.1_1901608_1903105_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCF_003193965.1_ASM319396v1	NZ_CP029667	Staphylococcus aureus strain AR_0225 chromosome, complete genome	5	1940768-1940849	4	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	2	1940792-1940825|1940792-1940825	NZ_CP029667.1_1376576-1376609|NZ_CP029667.1_1465801-1465768	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA,NA|38aa|down_1|NZ_CP029667.1_1941832_1941946_-	NA|417aa|up_9|NZ_CP029667.1_1931251_1932502_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP029667.1_1932607_1933915_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP029667.1_1934012_1934774_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP029667.1_1935101_1935953_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP029667.1_1936185_1936380_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP029667.1_1936733_1937555_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP029667.1_1937572_1938268_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP029667.1_1938260_1939286_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP029667.1_1939535_1939832_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP029667.1_1939824_1940211_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP029667.1_1940952_1941831_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|NZ_CP029667.1_1941832_1941946_-	NA	NA|127aa|down_2|NZ_CP029667.1_1942009_1942390_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|NZ_CP029667.1_1942547_1942904_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|NZ_CP029667.1_1943047_1943368_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|NZ_CP029667.1_1943517_1944057_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|NZ_CP029667.1_1944139_1944856_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|NZ_CP029667.1_1945003_1945426_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|NZ_CP029667.1_1945824_1946319_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|NZ_CP029667.1_1946473_1947091_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCF_003193965.1_ASM319396v1	NZ_CP029667	Staphylococcus aureus strain AR_0225 chromosome, complete genome	6	1984036-1984121	5	CRISPRCasFinder	no	cas3	WYL,csa3,DEDDh,cas3,DinG	Unclear	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	2	1984066-1984091|1984066-1984091	NZ_CP029667.1_2021099-2021074|NZ_CP029667.1_2021043-2021018	NA	1	1	Unclear	WYL,csa3,DEDDh,cas3,DinG	NA,NA	NA|254aa|up_9|NZ_CP029667.1_1972017_1972779_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_8|NZ_CP029667.1_1972900_1974091_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_7|NZ_CP029667.1_1974229_1975240_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_6|NZ_CP029667.1_1975292_1976306_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|up_5|NZ_CP029667.1_1977008_1977638_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|up_4|NZ_CP029667.1_1978339_1979242_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_3|NZ_CP029667.1_1979484_1980072_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_2|NZ_CP029667.1_1980645_1981590_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_1|NZ_CP029667.1_1981699_1982695_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_0|NZ_CP029667.1_1982691_1983603_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|down_0|NZ_CP029667.1_1984482_1985418_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_1|NZ_CP029667.1_1985484_1986924_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|down_2|NZ_CP029667.1_1986931_1987417_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|down_3|NZ_CP029667.1_1987424_1988264_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|down_4|NZ_CP029667.1_1988269_1989202_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_5|NZ_CP029667.1_1989808_1992655_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_6|NZ_CP029667.1_1992662_1994648_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_7|NZ_CP029667.1_1994916_1995153_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_8|NZ_CP029667.1_1995149_1995800_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_9|NZ_CP029667.1_1995973_1996813_-	COG3942, COG3942, Surface antigen [General function prediction only]
GCF_003193965.1_ASM319396v1	NZ_CP029667	Staphylococcus aureus strain AR_0225 chromosome, complete genome	7	1989439-1989519	6	CRISPRCasFinder	no	cas3	WYL,csa3,DEDDh,cas3,DinG	Unclear	AGTTGGCGGGGCCCCAACATAAAGAA	26	1	9	1989465-1989493|1989465-1989493|1989465-1989493|1989465-1989493|1989465-1989493|1989465-1989493|1989465-1989493|1989465-1989493|1989465-1989493	NZ_CP029667.1_981276-981248|NZ_CP029667.1_2442664-2442636|NZ_CP029667.1_2442719-2442691|NZ_CP029667.1_232149-232121|NZ_CP029667.1_771642-771670|NZ_CP029667.1_1159766-1159794|NZ_CP029667.1_1674040-1674012|NZ_CP029667.1_1872297-1872325|NZ_CP029667.1_1940755-1940783	NA	1	1	Unclear	WYL,csa3,DEDDh,cas3,DinG	NA,NA|36aa|down_5|NZ_CP029667.1_1996960_1997068_-,NA|35aa|down_7|NZ_CP029667.1_1998500_1998605_-	NA|301aa|up_9|NZ_CP029667.1_1978339_1979242_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_8|NZ_CP029667.1_1979484_1980072_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_7|NZ_CP029667.1_1980645_1981590_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_6|NZ_CP029667.1_1981699_1982695_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_5|NZ_CP029667.1_1982691_1983603_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|up_4|NZ_CP029667.1_1984482_1985418_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_3|NZ_CP029667.1_1985484_1986924_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_2|NZ_CP029667.1_1986931_1987417_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|up_1|NZ_CP029667.1_1987424_1988264_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_0|NZ_CP029667.1_1988269_1989202_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_0|NZ_CP029667.1_1989808_1992655_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_1|NZ_CP029667.1_1992662_1994648_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_2|NZ_CP029667.1_1994916_1995153_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_3|NZ_CP029667.1_1995149_1995800_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_4|NZ_CP029667.1_1995973_1996813_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|36aa|down_5|NZ_CP029667.1_1996960_1997068_-	NA	NA|370aa|down_6|NZ_CP029667.1_1997221_1998332_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|35aa|down_7|NZ_CP029667.1_1998500_1998605_-	NA	NA|844aa|down_8|NZ_CP029667.1_1998646_2001178_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_9|NZ_CP029667.1_2001591_2002164_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]
GCF_003193965.1_ASM319396v1	NZ_CP029667	Staphylococcus aureus strain AR_0225 chromosome, complete genome	8	2159794-2159886	7	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TAGCATCCAACTGCGTTCCTCTTCATCTTTAG	32	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|239aa|up_5|NZ_CP029667.1_2154661_2155378_-,NA|169aa|up_4|NZ_CP029667.1_2155539_2156046_-,NA|36aa|down_3|NZ_CP029667.1_2163293_2163401_-	NA|168aa|up_9|NZ_CP029667.1_2150343_2150847_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|179aa|up_8|NZ_CP029667.1_2150827_2151364_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|125aa|up_7|NZ_CP029667.1_2153079_2153454_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|NZ_CP029667.1_2153704_2154493_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|NZ_CP029667.1_2154661_2155378_-	NA	NA|169aa|up_4|NZ_CP029667.1_2155539_2156046_-	NA	NA|267aa|up_3|NZ_CP029667.1_2156181_2156982_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|NZ_CP029667.1_2156965_2157685_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|NZ_CP029667.1_2157739_2158690_-	pfam01032, FecCD, FecCD transport family	NA|276aa|up_0|NZ_CP029667.1_2158837_2159665_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|NZ_CP029667.1_2160103_2160739_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|NZ_CP029667.1_2161126_2162788_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|128aa|down_2|NZ_CP029667.1_2162784_2163168_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|36aa|down_3|NZ_CP029667.1_2163293_2163401_-	NA	NA|337aa|down_4|NZ_CP029667.1_2163475_2164486_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_5|NZ_CP029667.1_2164984_2165506_-	pfam08741, YwhD, YwhD family	NA|432aa|down_6|NZ_CP029667.1_2165533_2166829_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_7|NZ_CP029667.1_2166868_2167345_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_8|NZ_CP029667.1_2167513_2168050_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_9|NZ_CP029667.1_2168260_2169199_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)
GCF_003193965.1_ASM319396v1	NZ_CP029667	Staphylococcus aureus strain AR_0225 chromosome, complete genome	9	2404086-2404187	8	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|179aa|up_7|NZ_CP029667.1_2395704_2396241_+,NA|221aa|up_1|NZ_CP029667.1_2402332_2402995_+,NA|34aa|down_0|NZ_CP029667.1_2404859_2404961_-,NA|98aa|down_5|NZ_CP029667.1_2409948_2410242_+,NA|128aa|down_7|NZ_CP029667.1_2411195_2411579_+,NA|70aa|down_9|NZ_CP029667.1_2412403_2412613_+	NA|91aa|up_9|NZ_CP029667.1_2393936_2394209_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|NZ_CP029667.1_2394607_2395312_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_7|NZ_CP029667.1_2395704_2396241_+	NA	NA|514aa|up_6|NZ_CP029667.1_2396353_2397895_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|NZ_CP029667.1_2397919_2399386_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|NZ_CP029667.1_2399423_2400692_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|NZ_CP029667.1_2400691_2401270_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|NZ_CP029667.1_2401782_2402190_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|NZ_CP029667.1_2402332_2402995_+	NA	NA|319aa|up_0|NZ_CP029667.1_2403112_2404069_+	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|34aa|down_0|NZ_CP029667.1_2404859_2404961_-	NA	NA|463aa|down_1|NZ_CP029667.1_2405045_2406434_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_2|NZ_CP029667.1_2406514_2407270_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_3|NZ_CP029667.1_2407761_2408331_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_4|NZ_CP029667.1_2408346_2409870_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|98aa|down_5|NZ_CP029667.1_2409948_2410242_+	NA	NA|209aa|down_6|NZ_CP029667.1_2410314_2410941_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_7|NZ_CP029667.1_2411195_2411579_+	NA	NA|194aa|down_8|NZ_CP029667.1_2411644_2412226_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|70aa|down_9|NZ_CP029667.1_2412403_2412613_+	NA
GCF_003193965.1_ASM319396v1	NZ_CP029667	Staphylococcus aureus strain AR_0225 chromosome, complete genome	10	2880104-2880277	1,9	PILER-CR,CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACATAGAAGATGGCGGAAAG,TTACAATAATGTGCAAGTTGGCGG	40,24	2	16	2880157-2880173|2880227-2880242|2880227-2880242|2880227-2880242|2880227-2880242|2880227-2880242|2880227-2880242|2880227-2880242|2880227-2880242|2880227-2880242|2880227-2880242|2880227-2880242|2880227-2880242|2880227-2880242|2880227-2880242|2880227-2880242	NZ_CP029667.1_2524599-2524583|NZ_CP029667.1_147720-147735|NZ_CP029667.1_771536-771551|NZ_CP029667.1_771594-771609|NZ_CP029667.1_1376548-1376563|NZ_CP029667.1_1461417-1461432|NZ_CP029667.1_1465829-1465814|NZ_CP029667.1_1673974-1673959|NZ_CP029667.1_1774587-1774602|NZ_CP029667.1_1940495-1940510|NZ_CP029667.1_2442823-2442808|NZ_CP029667.1_334287-334302|NZ_CP029667.1_981152-981137|NZ_CP029667.1_1159718-1159733|NZ_CP029667.1_1419761-1419776|NZ_CP029667.1_1677942-1677927	NA:NA	2,1	2	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|60aa|up_1|NZ_CP029667.1_2877063_2877243_+,NA	NA|205aa|up_9|NZ_CP029667.1_2870781_2871396_+	PRK13584, hisG, ATP phosphoribosyltransferase	NA|417aa|up_8|NZ_CP029667.1_2871388_2872639_+	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|338aa|up_7|NZ_CP029667.1_2872654_2873668_+	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|193aa|up_6|NZ_CP029667.1_2873636_2874215_+	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|193aa|up_5|NZ_CP029667.1_2874211_2874790_+	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|235aa|up_4|NZ_CP029667.1_2874782_2875487_+	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|253aa|up_3|NZ_CP029667.1_2875483_2876242_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|211aa|up_2|NZ_CP029667.1_2876238_2876871_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|60aa|up_1|NZ_CP029667.1_2877063_2877243_+	NA	NA|681aa|up_0|NZ_CP029667.1_2877963_2880006_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|351aa|down_0|NZ_CP029667.1_2880452_2881505_-	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|291aa|down_1|NZ_CP029667.1_2881491_2882364_-	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|102aa|down_2|NZ_CP029667.1_2882360_2882666_-	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|413aa|down_3|NZ_CP029667.1_2882629_2883868_-	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|187aa|down_4|NZ_CP029667.1_2884031_2884592_+	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|221aa|down_5|NZ_CP029667.1_2885439_2886102_+	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|231aa|down_6|NZ_CP029667.1_2886118_2886811_+	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|256aa|down_7|NZ_CP029667.1_2886807_2887575_+	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|167aa|down_8|NZ_CP029667.1_2887809_2888310_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|159aa|down_9|NZ_CP029667.1_2888312_2888789_+	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase
