bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	4.1|941642|29|NZ_CP029685|CRISPRCasFinder	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	96.55	29	1	0	1	29	475642	475614	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	5e-07	44.4	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	475614-475642	TTTCGAAAAGAAATTCTACAAGCAATGCA	1
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	4.1|941642|29|NZ_CP029685|CRISPRCasFinder	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	96.55	29	1	0	1	29	1940199	1940171	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	5e-07	44.4	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	1940171-1940199	TTTCGAAAAGAAATTCTACAGACAATGCA	1
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	4.1|941642|29|NZ_CP029685|CRISPRCasFinder	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	93.10	29	2	0	1	29	322191	322163	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	5e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	322163-322191	TTTCGAAAAGAAATTCTACAGGCAATGCA	2
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	4.1|941642|29|NZ_CP029685|CRISPRCasFinder	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	93.10	29	2	0	1	29	996997	997025	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	5e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	996997-997025	TGCATTGCCTGTAGAATTTCTTTTCGAAA	2
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	4.1|941642|29|NZ_CP029685|CRISPRCasFinder	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	93.10	29	2	0	1	29	1080018	1080046	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	5e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	1080018-1080046	TGCATTGCCTGTAGAATTTCTTTTCGAAA	2
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	4.1|941642|29|NZ_CP029685|CRISPRCasFinder	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	93.10	29	2	0	1	29	1278500	1278472	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	5e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	1278472-1278500	TTTCAAAAAGAAATTCTACAGACAATGCA	2
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	4.1|941642|29|NZ_CP029685|CRISPRCasFinder	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	93.10	29	2	0	1	29	1754941	1754969	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	5e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	1754941-1754969	TGCATTGCCTGTAGAATTTCTTTTCGAAA	2
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	4.1|941642|29|NZ_CP029685|CRISPRCasFinder	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	93.10	29	2	0	1	29	2106451	2106479	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	5e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	2106451-2106479	TGCATTGTCTGTAGAATTTCCTTTCGAAA	2
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	4.1|941642|29|NZ_CP029685|CRISPRCasFinder	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	93.10	29	2	0	1	29	2647733	2647705	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	5e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	2647705-2647733	TTTCGAAAAGAAATTCTACAGGCAATGCA	2
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	5.1|947044|26|NZ_CP029685|CRISPRCasFinder	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	96.15	26	1	0	1	26	910061	910036	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	1e-05	39.6	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	910036-910061	CGGGGCCCCAACACAGAAGCAGGCGG	1
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	5.1|947044|26|NZ_CP029685|CRISPRCasFinder	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	92.31	26	2	0	1	26	322056	322031	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	1e-04	36.5	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	322031-322056	CGGGCCCCCAACATAGAAGCTGGCGG	2
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	5.1|947044|26|NZ_CP029685|CRISPRCasFinder	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	92.31	26	2	0	1	26	910117	910092	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	1e-04	36.5	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	910092-910117	CGGGGCCCCAACATAGAAGCAGGCGG	2
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	5.1|947044|26|NZ_CP029685|CRISPRCasFinder	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	92.31	26	2	0	1	26	1060347	1060322	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	1e-04	36.5	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	1060322-1060347	CGGGGCCCCAACACAGAGGCTGGTGG	2
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	6.1|996955|34|NZ_CP029685|CRISPRCasFinder	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	100.00	34	0	0	1	34	1486684	1486651	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	5e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1486651-1486684	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	0
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	6.1|996955|34|NZ_CP029685|CRISPRCasFinder	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	100.00	34	0	0	1	34	1575837	1575870	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	5e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1575837-1575870	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	0
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	7.1|1060378|26|NZ_CP029685|CRT	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	96.15	26	1	0	1	26	1060322	1060347	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	1e-05	39.6	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	1060322-1060347	CGGGGCCCCAACACAGAGGCTGGTGG	1
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	7.1|1060378|26|NZ_CP029685|CRT	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	92.31	26	2	0	1	26	910036	910061	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	1e-04	36.5	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	910036-910061	CGGGGCCCCAACACAGAAGCAGGCGG	2
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	7.3|1060492|26|NZ_CP029685|CRT	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	96.15	26	1	0	1	26	947125	947100	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	1e-05	39.6	1.0	CGGGGCCCCAACACAGAAGCTGGCGA	947100-947125	TCGTCAGCTTCTGTGTTGGGGCCCCG	1
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	7.3|1060492|26|NZ_CP029685|CRT	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	96.15	26	1	0	1	26	2095752	2095727	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	1e-05	39.6	1.0	CGGGGCCCCAACACAGAAGCTGGCGA	2095727-2095752	TCGTCAGCTTCTGTGTTGGGGCCCCG	1
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	7.3|1060492|26|NZ_CP029685|CRT	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	92.31	26	2	0	1	26	475480	475505	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	1e-04	36.5	1.0	CGGGGCCCCAACACAGAAGCTGGCGA	475480-475505	CGGGGCCCCAACAAAGAAGCTGACGA	2
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	7.4|1060548|53|NZ_CP029685|CRT	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	98.11	53	1	0	1	53	286626	286678	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	1e-17	82.4	1.0	GGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAA	286626-286678	GGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCAA	1
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	7.4|1060548|53|NZ_CP029685|CRT	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	98.11	53	1	0	1	53	2762813	2762761	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	1e-17	82.4	1.0	GGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAA	2762761-2762813	TTGGGAGTGGGACAGAAATGATATTTTCGTAAAATTTATTTCGTCGTCCCACC	1
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	9.1|1274382|35|NZ_CP029685|CRT	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	97.14	35	1	0	1	35	1274326	1274360	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	2e-09	53.9	1.0	CAGAGAGAAATAGGATCACCAATTTCAACAGACAA	1274326-1274360	CAGAGAGAAATAGGATCACCAATTCCAACAGACAA	1
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	9.3|1274495|35|NZ_CP029685|CRT	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	97.14	35	1	0	1	35	1274326	1274360	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	2e-09	53.9	1.0	CAGAGAGAAATAGGATCACCAATTCCAACAAACAA	1274326-1274360	CAGAGAGAAATAGGATCACCAATTCCAACAGACAA	1
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	9.5|1274607|35|NZ_CP029685|CRT	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	97.14	35	1	0	1	35	2212231	2212197	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	2e-09	53.9	1.0	CATAGAGAAATTGGAACCCCAATTTCTACAGACAA	2212197-2212231	TTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATG	1
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	9.5|1274607|35|NZ_CP029685|CRT	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	94.29	35	2	0	1	35	900546	900580	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	1e-08	50.7	1.0	CATAGAGAAATTGGAACCCCAATTTCTACAGACAA	900546-900580	CATAGAGAAATTGGATTCCCAATTTCTACAGACAA	2
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	9.5|1274607|35|NZ_CP029685|CRT	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	94.29	35	2	0	1	35	947170	947136	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	1e-08	50.7	1.0	CATAGAGAAATTGGAACCCCAATTTCTACAGACAA	947136-947170	TTGTCTGTAGAAATTGGGAATCCAATTTCTCTATG	2
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	9.5|1274607|35|NZ_CP029685|CRT	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	94.29	35	2	0	1	35	2762858	2762824	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	1e-08	50.7	1.0	CATAGAGAAATTGGAACCCCAATTTCTACAGACAA	2762824-2762858	TTGTCTGTAGAAATTGGGAATCCAATTTCTCTATG	2
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	9.6|1274510|20|NZ_CP029685|PILER-CR	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	95.00	20	1	0	1	20	1274341	1274360	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	0.010	30.1	1.0	TCACCAATTCCAACAAACAA	1274341-1274360	TCACCAATTCCAACAGACAA	1
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	10.1|1278564|26|NZ_CP029685|CRISPRCasFinder	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	96.15	26	1	0	1	26	322031	322056	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	1e-05	39.6	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	322031-322056	CGGGCCCCCAACATAGAAGCTGGCGG	1
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	10.1|1278564|26|NZ_CP029685|CRISPRCasFinder	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	96.15	26	1	0	1	26	910092	910117	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	1e-05	39.6	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	910092-910117	CGGGGCCCCAACATAGAAGCAGGCGG	1
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	10.1|1278564|26|NZ_CP029685|CRISPRCasFinder	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	92.31	26	2	0	1	26	910036	910061	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	1e-04	36.5	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	910036-910061	CGGGGCCCCAACACAGAAGCAGGCGG	2
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	10.1|1278564|26|NZ_CP029685|CRISPRCasFinder	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	92.31	26	2	0	1	26	910148	910173	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	1e-04	36.5	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	910148-910173	CGGGGCCCCAACATAAAAGCAGGCGG	2
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	12.1|2456121|33|NZ_CP029685|CRT	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	93.94	33	2	0	1	33	947080	947112	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	947080-947112	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	12.1|2456121|33|NZ_CP029685|CRT	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	93.94	33	2	0	1	33	1278553	1278521	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1278521-1278553	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	12.1|2456121|33|NZ_CP029685|CRT	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	93.94	33	2	0	1	33	1486638	1486606	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1486606-1486638	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	12.1|2456121|33|NZ_CP029685|CRT	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	93.94	33	2	0	1	33	1575883	1575915	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1575883-1575915	CATTATTGTAAGCTGACTTTTCGTCATCTTCTG	2
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	12.1|2456121|33|NZ_CP029685|CRT	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	93.94	33	2	0	1	33	2095707	2095739	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	2095707-2095739	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	12.1|2456121|33|NZ_CP029685|CRT	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	93.94	33	2	0	1	33	2728559	2728591	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	2728559-2728591	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	12.2|2456177|36|NZ_CP029685|CRT	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	100.00	36	0	0	1	36	1278500	1278465	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	6e-11	58.6	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1278465-1278500	TAGAGAATTTCAAAAAGAAATTCTACAGACAATGCA	0
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	12.2|2456177|36|NZ_CP029685|CRT	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	97.22	36	1	0	1	36	1940199	1940164	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	5e-10	55.5	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1940164-1940199	TAGAGAATTTCGAAAAGAAATTCTACAGACAATGCA	1
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	12.2|2456177|36|NZ_CP029685|CRT	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	94.44	36	2	0	1	36	322191	322156	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	322156-322191	TAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCA	2
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	12.2|2456177|36|NZ_CP029685|CRT	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	94.44	36	2	0	1	36	1754941	1754976	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1754941-1754976	TGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTA	2
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	12.2|2456177|36|NZ_CP029685|CRT	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	94.44	36	2	0	1	36	2106451	2106486	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	2106451-2106486	TGCATTGTCTGTAGAATTTCCTTTCGAAATTCTCTA	2
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	12.3|2456236|33|NZ_CP029685|CRT	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	93.94	33	2	0	1	33	947080	947112	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	947080-947112	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	12.3|2456236|33|NZ_CP029685|CRT	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	93.94	33	2	0	1	33	1278553	1278521	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	1278521-1278553	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	12.3|2456236|33|NZ_CP029685|CRT	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	93.94	33	2	0	1	33	1486638	1486606	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	1486606-1486638	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	12.3|2456236|33|NZ_CP029685|CRT	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	93.94	33	2	0	1	33	2095707	2095739	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	2095707-2095739	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP029685	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	12.3|2456236|33|NZ_CP029685|CRT	NZ_CP029685.1	Staphylococcus aureus strain CMRSA-3 chromosome, complete genome	93.94	33	2	0	1	33	2728559	2728591	514091-514191|781534-781626|900564-900646|941616-941696|947014-947099|996931-997012|1060348-1060630|1194022-1194109|1274361-1274662|1278534-1278619|2331935-2332085|2456098-2456291	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	2728559-2728591	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
