assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003287245.1_ASM328724v1	NZ_CP029371	Escherichia coli strain C chromosome, complete genome	1	395931-396054	1	CRISPRCasFinder	no	DEDDh	DEDDh,DinG,c2c9_V-U4,cas3,RT,csa3	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,RT,csa3	NA,NA|30aa|down_7|NZ_CP029371.1_404950_405040_+	NA|471aa|up_9|NZ_CP029371.1_385385_386798_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP029371.1_387354_387564_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP029371.1_388018_388645_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP029371.1_388665_390768_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP029371.1_390780_391419_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP029371.1_391482_392151_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP029371.1_392147_392933_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP029371.1_392936_393749_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP029371.1_393760_395365_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP029371.1_395490_395796_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP029371.1_396368_397625_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP029371.1_397665_399039_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP029371.1_399253_399895_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP029371.1_399934_401083_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP029371.1_401373_402585_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP029371.1_402697_403630_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP029371.1_403626_404652_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP029371.1_404950_405040_+	NA	NA|390aa|down_8|NZ_CP029371.1_405205_406375_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP029371.1_406609_407191_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_003287245.1_ASM328724v1	NZ_CP029371	Escherichia coli strain C chromosome, complete genome	2	1026928-1027019	2	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,RT,csa3	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,RT,csa3	NA|70aa|up_9|NZ_CP029371.1_1016003_1016213_-,NA	NA|70aa|up_9|NZ_CP029371.1_1016003_1016213_-	NA	NA|1321aa|up_8|NZ_CP029371.1_1016267_1020230_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP029371.1_1020269_1020908_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP029371.1_1021195_1022287_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP029371.1_1022286_1022979_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP029371.1_1022990_1023377_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP029371.1_1023384_1024185_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP029371.1_1024194_1024785_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP029371.1_1024795_1025290_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP029371.1_1025310_1026639_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP029371.1_1027442_1028039_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP029371.1_1028059_1028287_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP029371.1_1028324_1029566_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|420aa|down_3|NZ_CP029371.1_1029848_1031108_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP029371.1_1031368_1032289_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP029371.1_1032288_1032594_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP029371.1_1032745_1033345_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP029371.1_1033341_1035888_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP029371.1_1035887_1037060_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP029371.1_1037189_1037882_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_003287245.1_ASM328724v1	NZ_CP029371	Escherichia coli strain C chromosome, complete genome	3	1367631-1367775	3	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,RT,csa3	Orphan	CCTGATAAGACACGTTAAACGTCACATCAGGCATCGCTTGTCGGATGCGGCGCT	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,RT,csa3	NA,NA|36aa|down_6|NZ_CP029371.1_1375863_1375971_+	NA|135aa|up_9|NZ_CP029371.1_1355397_1355802_-	PRK10800, PRK10800, acyl-CoA thioesterase YbgC; Provisional	NA|98aa|up_8|NZ_CP029371.1_1355951_1356245_-	PRK10588, PRK10588, hypothetical protein; Provisional	NA|38aa|up_7|NZ_CP029371.1_1356244_1356358_-	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown]	NA|380aa|up_6|NZ_CP029371.1_1356372_1357512_-	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II	NA|523aa|up_5|NZ_CP029371.1_1357527_1359096_-	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA	NA|878aa|up_4|NZ_CP029371.1_1359942_1362576_-	PRK09819, PRK09819, mannosylglycerate hydrolase	NA|659aa|up_3|NZ_CP029371.1_1362593_1364570_-	PRK09765, PRK09765, PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional	NA|241aa|up_2|NZ_CP029371.1_1364678_1365401_+	PRK09764, PRK09764, GntR family transcriptional regulator	NA|290aa|up_1|NZ_CP029371.1_1365504_1366374_-	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|389aa|up_0|NZ_CP029371.1_1366373_1367540_-	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|406aa|down_0|NZ_CP029371.1_1367905_1369123_-	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|934aa|down_1|NZ_CP029371.1_1369137_1371939_-	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|239aa|down_2|NZ_CP029371.1_1372239_1372956_-	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|589aa|down_3|NZ_CP029371.1_1372971_1374738_-	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|116aa|down_4|NZ_CP029371.1_1374737_1375085_-	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|135aa|down_5|NZ_CP029371.1_1375078_1375483_-	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|36aa|down_6|NZ_CP029371.1_1375863_1375971_+	NA	NA|428aa|down_7|NZ_CP029371.1_1376176_1377460_+	PRK05614, gltA, citrate synthase	NA|189aa|down_8|NZ_CP029371.1_1377849_1378416_+	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|820aa|down_9|NZ_CP029371.1_1378466_1380926_+	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]
GCF_003287245.1_ASM328724v1	NZ_CP029371	Escherichia coli strain C chromosome, complete genome	4	1729130-1729274	4	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,RT,csa3	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,RT,csa3	NA,NA|28aa|down_2|NZ_CP029371.1_1732096_1732180_-	NA|357aa|up_9|NZ_CP029371.1_1714268_1715339_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP029371.1_1715431_1716013_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP029371.1_1716017_1717835_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP029371.1_1717990_1719364_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP029371.1_1719439_1720759_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP029371.1_1721165_1722461_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP029371.1_1722518_1723208_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP029371.1_1723397_1724600_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP029371.1_1724596_1727743_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP029371.1_1727868_1729053_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP029371.1_1729297_1730206_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP029371.1_1730330_1731242_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP029371.1_1732096_1732180_-	NA	NA|95aa|down_3|NZ_CP029371.1_1732665_1732950_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|115aa|down_4|NZ_CP029371.1_1734131_1734476_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP029371.1_1734733_1734925_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP029371.1_1734974_1735499_-	PRK03731, aroL, shikimate kinase AroL	NA|153aa|down_7|NZ_CP029371.1_1735681_1736140_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP029371.1_1736259_1737069_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP029371.1_1737085_1738201_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_003287245.1_ASM328724v1	NZ_CP029371	Escherichia coli strain C chromosome, complete genome	5	1856745-1856841	5	CRISPRCasFinder	no	DEDDh	DEDDh,DinG,c2c9_V-U4,cas3,RT,csa3	Unclear	GCCAGCGTCGCATCAGGCATCCGCGCA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,RT,csa3	NA,NA	NA|153aa|up_9|NZ_CP029371.1_1848623_1849082_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_8|NZ_CP029371.1_1849342_1850800_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|179aa|up_7|NZ_CP029371.1_1850856_1851393_-	PRK08179, prfH, peptide chain release factor-like protein; Reviewed	NA|89aa|up_6|NZ_CP029371.1_1851325_1851592_-	PRK09588, PRK09588, hypothetical protein; Reviewed	NA|151aa|up_5|NZ_CP029371.1_1851825_1852278_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|133aa|up_4|NZ_CP029371.1_1852287_1852686_-	PRK09885, PRK09885, type II toxin-antitoxin system YafO family toxin	NA|98aa|up_3|NZ_CP029371.1_1852688_1852982_-	PRK09778, PRK09778, type I toxin-antitoxin system antitoxin YafN	NA|352aa|up_2|NZ_CP029371.1_1853033_1854089_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|262aa|up_1|NZ_CP029371.1_1854159_1854945_-	PRK06778, PRK06778, hypothetical protein; Validated	NA|580aa|up_0|NZ_CP029371.1_1854889_1856629_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|166aa|down_0|NZ_CP029371.1_1856844_1857342_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|258aa|down_1|NZ_CP029371.1_1857517_1858291_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|87aa|down_2|NZ_CP029371.1_1858476_1858737_+	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair]	NA|93aa|down_3|NZ_CP029371.1_1858739_1859018_+	COG3041, COG3041, Uncharacterized protein conserved in bacteria [Function unknown]	NA|247aa|down_4|NZ_CP029371.1_1859173_1859914_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_5|NZ_CP029371.1_1859884_1860652_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_6|NZ_CP029371.1_1860857_1861436_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_7|NZ_CP029371.1_1861675_1864120_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_8|NZ_CP029371.1_1864162_1864636_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_9|NZ_CP029371.1_1864789_1865560_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional
GCF_003287245.1_ASM328724v1	NZ_CP029371	Escherichia coli strain C chromosome, complete genome	6	2063043-2063175	1	PILER-CR	no		DEDDh,DinG,c2c9_V-U4,cas3,RT,csa3	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,RT,csa3	NA,NA	NA|126aa|up_9|NZ_CP029371.1_2053748_2054126_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP029371.1_2054132_2054975_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP029371.1_2055052_2055532_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP029371.1_2055723_2057586_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP029371.1_2057578_2058109_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP029371.1_2058216_2059548_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP029371.1_2059604_2059892_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP029371.1_2059888_2061175_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP029371.1_2061225_2062167_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP029371.1_2062181_2062952_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP029371.1_2063425_2064940_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP029371.1_2064970_2066113_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|518aa|down_2|NZ_CP029371.1_2067531_2069085_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_3|NZ_CP029371.1_2069193_2069979_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_4|NZ_CP029371.1_2069984_2070575_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_5|NZ_CP029371.1_2070783_2071179_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_6|NZ_CP029371.1_2071440_2074662_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_7|NZ_CP029371.1_2074679_2075828_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_8|NZ_CP029371.1_2076283_2077105_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_9|NZ_CP029371.1_2077271_2078186_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional
GCF_003287245.1_ASM328724v1	NZ_CP029371	Escherichia coli strain C chromosome, complete genome	7	2070613-2070754	6	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,RT,csa3	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,RT,csa3	NA,NA	NA|444aa|up_9|NZ_CP029371.1_2058216_2059548_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_8|NZ_CP029371.1_2059604_2059892_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_7|NZ_CP029371.1_2059888_2061175_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_6|NZ_CP029371.1_2061225_2062167_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_5|NZ_CP029371.1_2062181_2062952_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_4|NZ_CP029371.1_2063425_2064940_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_3|NZ_CP029371.1_2064970_2066113_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|518aa|up_2|NZ_CP029371.1_2067531_2069085_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_CP029371.1_2069193_2069979_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_CP029371.1_2069984_2070575_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_CP029371.1_2070783_2071179_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_CP029371.1_2071440_2074662_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_CP029371.1_2074679_2075828_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_CP029371.1_2076283_2077105_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|NZ_CP029371.1_2077271_2078186_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|NZ_CP029371.1_2078251_2079202_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|NZ_CP029371.1_2079203_2079653_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|NZ_CP029371.1_2079777_2080272_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|NZ_CP029371.1_2080271_2083088_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|NZ_CP029371.1_2083130_2084072_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
GCF_003287245.1_ASM328724v1	NZ_CP029371	Escherichia coli strain C chromosome, complete genome	8	2246782-2246931	7	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,RT,csa3	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,RT,csa3	NA,NA|551aa|down_6|NZ_CP029371.1_2254045_2255698_-	NA|340aa|up_9|NZ_CP029371.1_2234974_2235994_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NZ_CP029371.1_2235997_2236561_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NZ_CP029371.1_2236777_2237809_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NZ_CP029371.1_2237832_2238597_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NZ_CP029371.1_2238659_2239979_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NZ_CP029371.1_2240045_2241044_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|NZ_CP029371.1_2241121_2242624_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP029371.1_2242784_2243867_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP029371.1_2243866_2244967_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP029371.1_2245233_2246745_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP029371.1_2247098_2247542_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP029371.1_2247541_2250397_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|NZ_CP029371.1_2250452_2251649_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP029371.1_2251841_2252345_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP029371.1_2252390_2252807_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP029371.1_2252968_2253973_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|551aa|down_6|NZ_CP029371.1_2254045_2255698_-	NA	NA|151aa|down_7|NZ_CP029371.1_2255820_2256273_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_8|NZ_CP029371.1_2256417_2257011_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_9|NZ_CP029371.1_2257081_2257795_+	PRK12742, PRK12742, SDR family oxidoreductase
GCF_003287245.1_ASM328724v1	NZ_CP029371	Escherichia coli strain C chromosome, complete genome	9	3914901-3915727	2,8,1,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,DinG,c2c9_V-U4,cas3,RT,csa3	Orphan	TAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGA,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	34,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E	9,13,13,9	13	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,RT,csa3	NA|47aa|up_1|NZ_CP029371.1_3913614_3913755_-,NA	NA|434aa|up_9|NZ_CP029371.1_3904311_3905613_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP029371.1_3905660_3907895_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP029371.1_3907972_3908221_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP029371.1_3908220_3908556_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP029371.1_3908626_3909418_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP029371.1_3909645_3911283_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP029371.1_3911370_3912669_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP029371.1_3912728_3913601_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP029371.1_3913614_3913755_-	NA	NA|224aa|up_0|NZ_CP029371.1_3913893_3914565_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP029371.1_3916365_3917844_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP029371.1_3917870_3919148_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP029371.1_3919466_3920252_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP029371.1_3920321_3921776_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP029371.1_3921797_3923207_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP029371.1_3923184_3923964_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|298aa|down_6|NZ_CP029371.1_3923927_3924821_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP029371.1_3924968_3925544_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP029371.1_3925560_3925821_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP029371.1_3925811_3927083_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_003287245.1_ASM328724v1	NZ_CP029371	Escherichia coli strain C chromosome, complete genome	10	3933961-3934233	4,9,2	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,DinG,c2c9_V-U4,cas3,RT,csa3	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,4,4	4	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,RT,csa3	NA,NA	NA|298aa|up_9|NZ_CP029371.1_3923927_3924821_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|up_8|NZ_CP029371.1_3924968_3925544_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|up_7|NZ_CP029371.1_3925560_3925821_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|up_6|NZ_CP029371.1_3925811_3927083_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|up_5|NZ_CP029371.1_3927160_3927526_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_4|NZ_CP029371.1_3927841_3929641_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_3|NZ_CP029371.1_3929640_3931353_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_2|NZ_CP029371.1_3931426_3932161_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_1|NZ_CP029371.1_3932425_3932578_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_0|NZ_CP029371.1_3932770_3933883_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|346aa|down_0|NZ_CP029371.1_3934314_3935352_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP029371.1_3935603_3936512_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP029371.1_3936513_3937941_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP029371.1_3937940_3938546_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP029371.1_3938595_3938919_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP029371.1_3939112_3939424_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP029371.1_3939442_3940153_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP029371.1_3940152_3940632_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP029371.1_3940628_3941678_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP029371.1_3941658_3942420_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_003287245.1_ASM328724v1	NZ_CP029371	Escherichia coli strain C chromosome, complete genome	11	4424952-4425067	10	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,RT,csa3	Orphan	GAGCCGTAGGCCGGATAAGGCGTTCACGC	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,RT,csa3	NA,NA	NA|268aa|up_9|NZ_CP029371.1_4413578_4414382_+	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	NA|301aa|up_8|NZ_CP029371.1_4414422_4415325_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP029371.1_4415517_4416708_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP029371.1_4416704_4417964_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP029371.1_4417953_4419582_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP029371.1_4419854_4421213_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP029371.1_4421217_4422294_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP029371.1_4422756_4423407_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP029371.1_4423460_4423715_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP029371.1_4423714_4424845_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP029371.1_4425086_4427372_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP029371.1_4428067_4431820_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP029371.1_4431947_4432670_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP029371.1_4432816_4435444_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP029371.1_4435592_4437281_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP029371.1_4437277_4437901_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP029371.1_4438044_4442439_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP029371.1_4442439_4444089_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP029371.1_4444093_4444870_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP029371.1_4444943_4446128_-	PRK05790, PRK05790, putative acyltransferase; Provisional
