The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP030323	Staphylococcus aureus strain AR_475 chromosome, complete genome	2790267	1374699	1385402	2790267	transposase	Staphylococcus_phage(63.64%)	11	NA	NA
WP_000277723.1|1374699_1376346_+|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	99.1	1.6e-292
WP_000206347.1|1377087_1377876_-	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.4	7.0e-140
WP_000777467.1|1378269_1379562_+|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	30.8	2.6e-14
WP_001066124.1|1379554_1380316_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	44.2	1.1e-54
WP_020444758.1|1380494_1380953_+	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
WP_000727649.1|1381047_1381497_-	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000702263.1|1382181_1382532_+	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|1382584_1382845_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|1383155_1383335_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_049280116.1|1383751_1384297_+	hypothetical protein	NA	A0A2H4PQP5	Staphylococcus_phage	32.5	1.8e-09
WP_001044434.1|1384547_1385402_+	M23 family metallopeptidase	NA	E5G070	Clostridium_phage	37.9	6.4e-06
>prophage 2
NZ_CP030323	Staphylococcus aureus strain AR_475 chromosome, complete genome	2790267	1390956	1425674	2790267	protease	Staphylococcus_phage(93.75%)	40	NA	NA
WP_000414219.1|1390956_1391529_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
WP_000627534.1|1391629_1391971_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	93.8	2.8e-53
WP_000669039.1|1392011_1392638_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.6	5.8e-81
WP_000070638.1|1392713_1393709_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	92.7	1.7e-66
WP_001838615.1|1393789_1394440_-	hypothetical protein	NA	A0A2H4PQM8	Staphylococcus_phage	68.5	4.7e-33
WP_078065177.1|1394742_1395198_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	97.9	4.0e-79
WP_000348384.1|1395357_1396836_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	96.7	3.4e-281
WP_000778517.1|1396840_1397842_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.1e-185
WP_000718107.1|1397838_1398096_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672009.1|1398161_1398635_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	3.6e-83
WP_078065176.1|1398639_1399386_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	7.8e-141
WP_000109912.1|1399679_1401272_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_000933822.1|1401643_1402837_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000366163.1|1402961_1403870_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000453310.1|1404081_1404915_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	1.3e-157
WP_000623471.1|1405164_1405518_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_001200550.1|1405514_1405880_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.2e-59
WP_000091445.1|1406135_1406438_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096492.1|1406695_1407409_+	transaldolase	NA	M1PR54	Cyanophage	34.5	1.2e-18
WP_000492902.1|1407877_1408498_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_025175276.1|1408664_1409300_-|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001030470.1|1409597_1410041_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001153740.1|1410027_1410471_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671047.1|1410583_1411054_-	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	97.4	4.4e-81
WP_000384171.1|1411252_1411477_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032836.1|1411752_1412607_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.1	4.9e-38
WP_000163243.1|1413011_1413404_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	98.5	1.3e-70
WP_000989100.1|1413421_1414714_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	97.4	2.2e-223
WP_000221186.1|1414713_1415028_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	95.2	1.4e-51
WP_001261664.1|1415549_1417052_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.1e-29
WP_000384177.1|1417544_1418576_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.5	9.0e-196
WP_000493883.1|1418582_1419215_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	2.4e-111
WP_001159028.1|1419225_1420407_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.2	1.6e-225
WP_001008551.1|1420419_1420884_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001196343.1|1421005_1422007_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	98.8	1.7e-183
WP_014937042.1|1422118_1422238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000266100.1|1422240_1423068_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000757543.1|1423639_1424041_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000764430.1|1424160_1424724_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	98.4	3.5e-101
WP_000526539.1|1424720_1425674_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
>prophage 3
NZ_CP030323	Staphylococcus aureus strain AR_475 chromosome, complete genome	2790267	1642550	1650862	2790267	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
WP_001217251.1|1642550_1644350_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
WP_001283055.1|1644573_1645680_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624567.1|1645810_1646488_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683914.1|1646490_1647591_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
WP_001062177.1|1647704_1649051_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000924210.1|1649060_1649951_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	3.4e-26
WP_001213910.1|1650076_1650862_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	6.1e-19
>prophage 4
NZ_CP030323	Staphylococcus aureus strain AR_475 chromosome, complete genome	2790267	1745211	1873311	2790267	integrase,capsid,tail,holin,protease,portal,tRNA,lysis,terminase,head	Staphylococcus_phage(84.0%)	114	1779616:1779640	1825014:1825038
WP_000858789.1|1745211_1746504_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
WP_000362218.1|1746832_1747519_+	DnaD domain-containing protein	NA	Q938N2	Temperate_phage	32.6	1.2e-07
WP_000253769.1|1747508_1748168_+	endonuclease III	NA	NA	NA	NA	NA
WP_000182018.1|1748172_1748514_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000138347.1|1749030_1751214_-	penicillin-binding protein	NA	NA	NA	NA	NA
WP_001794297.1|1751210_1751888_-	Holliday junction resolvase RecU	NA	A0A1C8E9C3	Bacillus_phage	35.5	1.9e-24
WP_001788819.1|1752142_1752322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001000801.1|1752376_1752727_+	YppE family protein	NA	NA	NA	NA	NA
WP_000241301.1|1752719_1753283_+	DUF1273 domain-containing protein	NA	NA	NA	NA	NA
WP_001286320.1|1753296_1753641_+	cell division regulator GpsB	NA	NA	NA	NA	NA
WP_000487150.1|1754292_1755438_+	class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
WP_000516799.1|1755521_1755854_+	DUF4889 domain-containing protein	NA	NA	NA	NA	NA
WP_000798998.1|1756062_1757400_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_000608498.1|1757703_1761144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001133012.1|1761163_1762042_+	5'-3' exonuclease	NA	S5M4P0	Bacillus_phage	29.5	1.8e-19
WP_000959419.1|1762516_1763635_+	alanine dehydrogenase	NA	NA	NA	NA	NA
WP_000210828.1|1763729_1764770_+	bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA	NA	NA	NA	NA
WP_000064778.1|1764800_1766123_+	amino acid permease	NA	NA	NA	NA	NA
WP_000414687.1|1766278_1767670_+	multidrug efflux MFS transporter NorB	NA	NA	NA	NA	NA
1779616:1779640	attL	CGAAAGATGCATTGAATGGTGATGC	NA	NA	NA	NA
WP_112380513.1|1781586_1782624_-|integrase	site-specific integrase	integrase	Q38086	Staphylococcus_phage	99.7	5.9e-179
WP_000391618.1|1782796_1783336_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	33.1	9.0e-14
WP_000705238.1|1783475_1783643_-	hypothetical protein	NA	Q4ZDJ4	Staphylococcus_virus	100.0	1.7e-24
WP_001089804.1|1783842_1784028_-	hypothetical protein	NA	A0A2I6PDS4	Staphylococcus_phage	100.0	2.3e-25
WP_000094092.1|1784181_1784889_-	helix-turn-helix transcriptional regulator	NA	G4KNM8	Staphylococcus_phage	99.6	1.0e-129
WP_000548578.1|1785059_1785299_+	helix-turn-helix transcriptional regulator	NA	G4KNM9	Staphylococcus_phage	100.0	2.3e-38
WP_000435341.1|1785311_1785572_+	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
WP_000351243.1|1785595_1786135_-	hypothetical protein	NA	A7TW92	Staphylococcus_phage	100.0	1.7e-97
WP_001148618.1|1786191_1786944_+	oxidoreductase	NA	A0A1X9H0A0	Staphylococcus_phage	100.0	8.7e-140
WP_000388066.1|1786960_1787155_+	hypothetical protein	NA	A0A1X9H0A2	Staphylococcus_phage	100.0	1.5e-19
WP_000939496.1|1787185_1787326_+	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
WP_000275058.1|1787340_1787973_-	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
WP_001120197.1|1788031_1788352_+	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000066020.1|1788348_1788510_+	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
WP_000291489.1|1788602_1788863_+	DUF1108 family protein	NA	A0A1W6JQ03	Staphylococcus_phage	100.0	7.6e-43
WP_001205732.1|1788871_1789135_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000700562.1|1789143_1791087_+	AAA family ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	99.2	0.0e+00
WP_031764964.1|1791088_1792009_+	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	99.7	3.0e-166
WP_078090917.1|1792089_1792698_+	MBL fold metallo-hydrolase	NA	A0A1W6JPL3	Staphylococcus_phage	96.9	5.1e-82
WP_000610649.1|1792698_1793169_+	single-stranded DNA-binding protein	NA	S4V682	Staphylococcus_phage	96.2	3.1e-79
WP_000148302.1|1793198_1794083_+	DnaD domain protein	NA	S4V6D4	Staphylococcus_phage	96.6	3.1e-136
WP_000338528.1|1794089_1794308_+	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000401963.1|1794316_1794721_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0E3XBN4	Staphylococcus_phage	98.5	1.0e-70
WP_000101275.1|1794733_1795102_+	hypothetical protein	NA	I1W656	Staphylococcus_phage	100.0	6.3e-51
WP_000131381.1|1795105_1795348_+	hypothetical protein	NA	A0A1P8L6E3	Staphylococcus_phage	100.0	3.0e-41
WP_001065046.1|1795362_1795614_+	DUF1024 family protein	NA	G4KNP4	Staphylococcus_phage	96.4	4.1e-38
WP_001061844.1|1796236_1796770_+	hypothetical protein	NA	A0A0H3U2Z8	Staphylococcus_phage	98.9	5.1e-94
WP_000195810.1|1796806_1797013_+	DUF1381 domain-containing protein	NA	S4V684	Staphylococcus_phage	100.0	7.6e-30
WP_000595267.1|1797009_1797159_+	hypothetical protein	NA	R9QSU6	Staphylococcus_phage	100.0	1.8e-17
WP_001005262.1|1797317_1797968_+	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	100.0	8.9e-117
WP_000265041.1|1797967_1798168_+	DUF1514 family protein	NA	R9QT57	Staphylococcus_phage	100.0	1.1e-28
WP_000590126.1|1798195_1798612_+	hypothetical protein	NA	A0A1X9H0U8	Staphylococcus_phage	100.0	2.9e-76
WP_000988336.1|1798843_1799143_+	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000402904.1|1799273_1799618_+	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000625088.1|1799614_1801276_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000025274.1|1801291_1802479_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000861914.1|1802462_1803200_+|protease	Clp protease ClpP	protease	C8CH20	Staphylococcus_phage	100.0	2.3e-129
WP_000154555.1|1803223_1804369_+|capsid	phage major capsid protein	capsid	A0A1X9H072	Staphylococcus_phage	100.0	5.6e-215
WP_000238236.1|1804388_1804673_+	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000150936.1|1804662_1804947_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|1804930_1805293_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000114225.1|1805289_1805694_+	hypothetical protein	NA	A0A2I6PDJ6	Staphylococcus_phage	100.0	4.3e-69
WP_000565498.1|1805690_1806098_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000268741.1|1806098_1806743_+|tail	phage tail protein	tail	W5R9H4	Staphylococcus_phage	100.0	6.5e-120
WP_072050172.1|1806784_1807009_+	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	98.6	8.8e-32
WP_001096355.1|1807058_1807409_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_000504552.1|1807653_1812165_+|tail	phage tail tape measure protein	tail	A0A1X9H084	Staphylococcus_phage	90.8	0.0e+00
WP_000567408.1|1812161_1813646_+|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_000582158.1|1813661_1817447_+	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.4	0.0e+00
WP_001153681.1|1817436_1817589_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_001040261.1|1817635_1817923_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_000539688.1|1817980_1818277_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_011447039.1|1818426_1818603_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_001791821.1|1818655_1818763_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|1818814_1819069_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|1819080_1819836_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000919350.1|1820026_1820518_+	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_020444758.1|1821044_1821503_+	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
WP_000727649.1|1821597_1822047_-	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000702262.1|1822727_1823078_+	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|1823130_1823391_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|1823701_1823881_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001062933.1|1842719_1843121_-	ribonuclease HI family protein	NA	NA	NA	NA	NA
1825014:1825038	attR	CGAAAGATGCATTGAATGGTGATGC	NA	NA	NA	NA
WP_000282171.1|1843362_1844067_-	queuosine precursor transporter	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	23.8	8.4e-12
WP_001824522.1|1844311_1844506_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_001165814.1|1844517_1844769_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000404627.1|1844806_1845931_+	virulence factor	NA	NA	NA	NA	NA
WP_000995285.1|1845946_1846384_+	BrxA/BrxB family bacilliredoxin	NA	NA	NA	NA	NA
WP_000934885.1|1846807_1847764_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	85.2	1.6e-167
WP_000175746.1|1847963_1848443_+	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	79.9	2.0e-73
WP_000166052.1|1848457_1849297_+	fatty acid kinase FakB2	NA	A0A0N9SI50	Staphylococcus_phage	76.5	3.0e-48
WP_000159902.1|1849390_1849924_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_000913315.1|1849916_1850345_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_000473654.1|1850356_1850857_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_000801007.1|1850856_1851078_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000342123.1|1851269_1852760_+	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	28.5	8.6e-22
WP_000620194.1|1853159_1853669_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000160908.1|1853680_1854751_+	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_000084773.1|1854767_1855382_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_000192137.1|1856523_1857183_+	response regulator transcription factor ArlR	NA	W8CYM9	Bacillus_phage	33.8	1.1e-34
WP_112380514.1|1857179_1858535_+	sensor histidine kinase ArlS	NA	A0A1V0SGX0	Hokovirus	25.0	8.9e-10
WP_000180678.1|1858823_1861622_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_001115459.1|1861635_1862904_+	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_000334509.1|1863483_1864293_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000902174.1|1864321_1864525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001185421.1|1864705_1865497_+	MoxR family ATPase	NA	R4TG24	Halovirus	34.2	3.3e-12
WP_001283670.1|1865510_1867397_+	nitric oxide reductase activation protein NorD	NA	NA	NA	NA	NA
WP_001039275.1|1867621_1868965_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
WP_000138424.1|1869038_1870175_-	toxic anion resistance protein	NA	A0A291I9K4	Lactobacillus_phage	28.3	7.4e-34
WP_001788788.1|1870206_1870836_-|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis protein	lysis	NA	NA	NA	NA
WP_001215907.1|1870854_1871124_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000269923.1|1871282_1871591_+	DUF1033 family protein	NA	NA	NA	NA	NA
WP_000809131.1|1871761_1871962_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	66.2	8.4e-18
WP_000876210.1|1872158_1872560_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000558406.1|1872693_1873311_+|protease	protease	protease	NA	NA	NA	NA
>prophage 5
NZ_CP030323	Staphylococcus aureus strain AR_475 chromosome, complete genome	2790267	1963755	1972531	2790267	transposase,capsid	Staphylococcus_phage(66.67%)	14	NA	NA
WP_078237844.1|1963755_1964424_-|capsid	minor capsid protein	capsid	Q4ZE35	Staphylococcus_virus	68.7	3.2e-29
WP_000440735.1|1964941_1965220_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031786973.1|1965186_1965315_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000780597.1|1965375_1965570_-	hypothetical protein	NA	A0A1J0MG79	Staphylococcus_phage	71.4	2.8e-18
WP_001813273.1|1965569_1965824_-	hypothetical protein	NA	A0A1J0MF61	Staphylococcus_phage	62.7	1.4e-25
WP_000956747.1|1966297_1966549_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000477491.1|1966675_1966780_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|1967291_1967477_-	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_000777467.1|1967810_1969103_+|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	30.8	2.6e-14
WP_001066124.1|1969095_1969857_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	44.2	1.1e-54
WP_001788716.1|1970111_1970222_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001002343.1|1970917_1971124_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	56.7	1.9e-12
WP_078065144.1|1971419_1971644_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	71.0	4.3e-18
WP_001659797.1|1972333_1972531_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	1.7e-10
>prophage 6
NZ_CP030323	Staphylococcus aureus strain AR_475 chromosome, complete genome	2790267	2233092	2241565	2790267		Synechococcus_phage(33.33%)	9	NA	NA
WP_000238670.1|2233092_2233659_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	3.6e-29
WP_000030818.1|2233661_2234690_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000483726.1|2234682_2236167_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.5	1.6e-44
WP_000032747.1|2236145_2238335_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.8e-140
WP_000666799.1|2238327_2238999_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000848350.1|2239000_2239264_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174047.1|2239263_2239968_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.2	1.4e-46
WP_001010401.1|2239971_2241096_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000861570.1|2241082_2241565_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
>prophage 7
NZ_CP030323	Staphylococcus aureus strain AR_475 chromosome, complete genome	2790267	2261474	2279668	2790267	transposase,holin,bacteriocin,protease	Enterococcus_phage(33.33%)	22	NA	NA
WP_001088784.1|2261474_2262656_+|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
WP_000284457.1|2262693_2263023_+	staphostatin B	NA	NA	NA	NA	NA
WP_000184947.1|2263261_2264083_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000150220.1|2264075_2264879_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000526687.1|2264865_2266539_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_001804449.1|2266525_2267737_-	isochorismate synthase	NA	NA	NA	NA	NA
WP_072357920.1|2267840_2267918_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070968.1|2268068_2269007_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000620942.1|2269057_2269609_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001788574.1|2269698_2269989_+	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	38.0	7.5e-07
WP_020978112.1|2270052_2270184_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081331.1|2270229_2271189_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766009.1|2271676_2272033_+	DoxX family protein	NA	NA	NA	NA	NA
WP_001824253.1|2272121_2272259_-	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_001795266.1|2272399_2272690_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571185.1|2272777_2273419_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	1.7e-19
WP_000668628.1|2273415_2273736_-	YxeA family protein	NA	NA	NA	NA	NA
WP_000870825.1|2273738_2275703_-|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_029656376.1|2275746_2276013_-|bacteriocin	bacteriocin transporter	bacteriocin	NA	NA	NA	NA
WP_099112139.1|2276662_2276740_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_014363402.1|2277023_2278670_-|transposase	IS1182 family transposase	transposase	A0A146ICT8	Staphylococcus_phage	99.3	3.7e-292
WP_001033867.1|2279065_2279668_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 8
NZ_CP030323	Staphylococcus aureus strain AR_475 chromosome, complete genome	2790267	2407865	2429368	2790267	coat,integrase,terminase	Staphylococcus_phage(77.78%)	33	2410377:2410398	2431041:2431062
WP_000168845.1|2407865_2408627_-	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
WP_001183851.1|2408955_2409807_+	DUF368 domain-containing protein	NA	NA	NA	NA	NA
WP_064128943.1|2410040_2410235_-	CsbD family protein	NA	NA	NA	NA	NA
2410377:2410398	attL	AGGGAGTGGGACAGAAATGATA	NA	NA	NA	NA
WP_000382163.1|2411359_2411560_-	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
WP_000139423.1|2411546_2411657_-	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_001795626.1|2411727_2411880_-	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	98.0	7.6e-19
WP_001035631.1|2412253_2412811_+	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	73.8	1.4e-70
WP_000278085.1|2412888_2413689_-	staphylococcal enterotoxin type B	NA	A0A097PAT7	Streptococcus_pyogenes_phage	49.4	1.0e-53
WP_001293067.1|2413996_2414566_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.9	1.0e-100
WP_045181470.1|2414562_2414775_-	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	98.6	1.1e-31
WP_000771368.1|2414906_2415434_-|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
WP_000448773.1|2415484_2415703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000846285.1|2415720_2416299_-	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.4	1.4e-28
WP_001190615.1|2416310_2416652_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
WP_001019764.1|2417168_2417810_-	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	91.5	1.5e-108
WP_000998181.1|2417806_2418091_-	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	95.7	1.9e-47
WP_001039168.1|2418092_2418455_-	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	99.2	8.9e-66
WP_000390454.1|2418740_2420210_-	hypothetical protein	NA	A0A1W6JQD6	Staphylococcus_phage	99.0	2.9e-288
WP_001002732.1|2420226_2421096_-	hypothetical protein	NA	A0A1W6JQL5	Staphylococcus_phage	92.7	3.4e-156
WP_001103942.1|2421159_2421480_-	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	51.9	1.3e-20
WP_001058486.1|2421482_2421692_-	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	1.7e-29
WP_000784875.1|2421684_2421831_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000091731.1|2421842_2422115_-	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	90.0	9.7e-41
WP_000243851.1|2422107_2422371_-	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	3.1e-36
WP_001260004.1|2422563_2422896_+	helix-turn-helix transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
WP_000281657.1|2422907_2423366_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0H4J322	Staphylococcus_phage	83.0	5.1e-66
WP_001228759.1|2423382_2423814_+	hypothetical protein	NA	Q4ZCB6	Staphylococcus_virus	56.0	5.1e-36
WP_001033316.1|2423883_2424612_+	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	35.4	2.3e-28
WP_000733774.1|2424635_2425364_+	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	31.8	5.5e-22
WP_000266157.1|2425452_2426673_+|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	6.4e-100
WP_000732334.1|2426815_2427637_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000520233.1|2427654_2428350_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000571213.1|2428342_2429368_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	9.4e-28
2431041:2431062	attR	TATCATTTCTGTCCCACTCCCT	NA	NA	NA	NA
>prophage 9
NZ_CP030323	Staphylococcus aureus strain AR_475 chromosome, complete genome	2790267	2511938	2536024	2790267	transposase	uncultured_Caudovirales_phage(33.33%)	20	NA	NA
WP_000616873.1|2511938_2512700_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
WP_001245572.1|2512696_2513653_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876318.1|2513639_2514611_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_000499195.1|2514649_2514805_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000562499.1|2515304_2516276_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.0	2.7e-170
WP_000855505.1|2516393_2518499_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|2518461_2518860_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068497.1|2519660_2520527_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|2520546_2521047_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_000193751.1|2521386_2522892_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_031760357.1|2522969_2523071_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429011.1|2523163_2524081_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	6.2e-07
WP_000197262.1|2524688_2525231_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663039.1|2525389_2526448_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.4	1.4e-21
WP_000180997.1|2526687_2528202_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_000589262.1|2528194_2529172_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	5.4e-25
WP_000983680.1|2529393_2531175_-	DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	36.8	8.5e-77
WP_000525113.1|2531186_2533070_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.6	3.3e-55
WP_064128952.1|2533414_2533900_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	3.8e-19
WP_000098285.1|2534083_2536024_-	polyglycerol-phosphate lipoteichoic acid synthase LtaS	NA	W6LM83	Streptococcus_phage	39.5	1.3e-110
>prophage 10
NZ_CP030323	Staphylococcus aureus strain AR_475 chromosome, complete genome	2790267	2539172	2546992	2790267		Pandoravirus(16.67%)	10	NA	NA
WP_001217797.1|2539172_2540324_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
WP_000604508.1|2540307_2540901_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	6.8e-39
WP_000446724.1|2541251_2541920_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|2541921_2542341_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062976.1|2542344_2543058_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000637683.1|2543156_2543741_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093553.1|2544020_2544461_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|2544802_2545276_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|2545250_2545937_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244415.1|2545936_2546992_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
>prophage 1
NZ_CP030324	Staphylococcus aureus strain AR_475 plasmid unnamed1, complete sequence	27168	5583	13012	27168	transposase	Staphylococcus_phage(50.0%)	10	NA	NA
WP_000793446.1|5583_6513_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	42.2	1.0e-41
WP_000369394.1|6505_7243_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000505741.1|7256_7460_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001105960.1|7489_8164_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	97.3	1.7e-126
WP_000627290.1|8936_9479_+	streptothricin N-acetyltransferase Sat4	NA	A0A1B0RXL7	Streptococcus_phage	100.0	8.9e-94
WP_001096887.1|9571_10366_+	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_001105991.1|11018_11693_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	99.6	6.8e-128
WP_032603369.1|11772_12033_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001037130.1|12025_12211_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000690637.1|12433_13012_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	4.9e-42
