assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003308975.1_ASM330897v1	NZ_CP030768	Escherichia coli strain 2017C-4173W12 chromosome, complete genome	1	67569-67695	1	CRISPRCasFinder	no	c2c9_V-U4	c2c9_V-U4,cas3,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PD-DExK,DEDDh,DinG,cas14j	Type V-U4	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	TypeV-U4	c2c9_V-U4,cas3,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PD-DExK,DEDDh,DinG,cas14j	NA,NA|357aa|down_5|NZ_CP030768.1_72606_73677_+	NA|395aa|up_9|NZ_CP030768.1_46582_47767_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|NZ_CP030768.1_47840_48617_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NZ_CP030768.1_48621_50271_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1465aa|up_6|NZ_CP030768.1_50271_54666_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NZ_CP030768.1_54809_55433_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP030768.1_55429_57118_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP030768.1_57266_59894_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP030768.1_60040_60763_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1238aa|up_1|NZ_CP030768.1_60823_64537_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP030768.1_65232_67518_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP030768.1_67751_68882_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP030768.1_68881_69136_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP030768.1_69189_69840_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|397aa|down_3|NZ_CP030768.1_69920_71111_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|293aa|down_4|NZ_CP030768.1_71262_72141_+	cd05466, PBP2_LTTR_substrate, The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily	NA|357aa|down_5|NZ_CP030768.1_72606_73677_+	NA	NA|359aa|down_6|NZ_CP030768.1_73897_74974_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_7|NZ_CP030768.1_74978_76337_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_8|NZ_CP030768.1_76609_78238_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_9|NZ_CP030768.1_78227_79487_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
GCF_003308975.1_ASM330897v1	NZ_CP030768	Escherichia coli strain 2017C-4173W12 chromosome, complete genome	2	598006-599132	1,1,2,2	CRT,PILER-CR,CRISPRCasFinder,PILER-CR	no	cas2,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	c2c9_V-U4,cas3,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PD-DExK,DEDDh,DinG,cas14j	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E	18,17,17,17	18	TypeI-E	c2c9_V-U4,cas3,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PD-DExK,DEDDh,DinG,cas14j	NA,NA	NA|254aa|up_9|NZ_CP030768.1_589879_590641_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP030768.1_590621_591671_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP030768.1_591667_592147_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP030768.1_592146_592857_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP030768.1_592875_593187_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP030768.1_593380_593704_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP030768.1_593753_594359_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP030768.1_594358_595786_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP030768.1_595787_596696_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP030768.1_596947_597985_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP030768.1_599228_599522_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas6e|217aa|down_1|NZ_CP030768.1_600438_601089_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_2|NZ_CP030768.1_601070_601817_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_3|NZ_CP030768.1_601827_602883_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_4|NZ_CP030768.1_602897_603434_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_5|NZ_CP030768.1_603430_604993_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_6|NZ_CP030768.1_605090_607790_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_7|NZ_CP030768.1_607984_608137_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_8|NZ_CP030768.1_608401_609136_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP030768.1_609209_610922_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_003308975.1_ASM330897v1	NZ_CP030768	Escherichia coli strain 2017C-4173W12 chromosome, complete genome	3	624835-625412	3,2,3	CRISPRCasFinder,CRT,PILER-CR	no	cas3	c2c9_V-U4,cas3,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PD-DExK,DEDDh,DinG,cas14j	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	9,9,9	9	Unclear	c2c9_V-U4,cas3,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PD-DExK,DEDDh,DinG,cas14j	NA,NA	NA|424aa|up_9|NZ_CP030768.1_613479_614751_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP030768.1_614741_615002_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP030768.1_615018_615594_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP030768.1_615740_616601_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP030768.1_616597_617377_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP030768.1_617354_618764_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP030768.1_618785_620240_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP030768.1_620309_621095_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP030768.1_621413_622691_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP030768.1_622717_624196_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP030768.1_625751_626423_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|201aa|down_1|NZ_CP030768.1_626595_627198_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|298aa|down_2|NZ_CP030768.1_627211_628105_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|down_3|NZ_CP030768.1_628119_629268_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|305aa|down_4|NZ_CP030768.1_629264_630179_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_5|NZ_CP030768.1_630238_631537_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_6|NZ_CP030768.1_631623_633261_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_7|NZ_CP030768.1_633488_634280_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|745aa|down_8|NZ_CP030768.1_634375_636610_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP030768.1_636657_637959_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
GCF_003308975.1_ASM330897v1	NZ_CP030768	Escherichia coli strain 2017C-4173W12 chromosome, complete genome	4	1064904-1065054	4	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PD-DExK,DEDDh,DinG,cas14j	Orphan	AAGGCGTTCACGCCGCATCCGGCAATCGTGCATAATGCCTGATGCGACGCTG	52	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PD-DExK,DEDDh,DinG,cas14j	NA|275aa|up_7|NZ_CP030768.1_1055496_1056321_-,NA	NA|357aa|up_9|NZ_CP030768.1_1053823_1054894_-	TIGR04407, LptF_YjgP, LPS export ABC transporter permease LptF	NA|187aa|up_8|NZ_CP030768.1_1054924_1055485_-	COG3054, COG3054, Predicted transcriptional regulator [General function prediction only]	NA|275aa|up_7|NZ_CP030768.1_1055496_1056321_-	NA	NA|450aa|up_6|NZ_CP030768.1_1056320_1057670_-	COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]	NA|253aa|up_5|NZ_CP030768.1_1057715_1058474_-	cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor	NA|238aa|up_4|NZ_CP030768.1_1058505_1059219_-	cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor	NA|231aa|up_3|NZ_CP030768.1_1059392_1060085_+	cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor	NA|500aa|up_2|NZ_CP030768.1_1060133_1061633_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|620aa|up_1|NZ_CP030768.1_1061924_1063784_-	PRK10507, PRK10507, bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional	NA|289aa|up_0|NZ_CP030768.1_1063988_1064855_+	PRK11752, PRK11752, putative S-transferase; Provisional	NA|83aa|down_0|NZ_CP030768.1_1065086_1065335_-	PRK10413, PRK10413, hydrogenase maturation factor HybG	NA|114aa|down_1|NZ_CP030768.1_1065347_1065689_-	PRK12380, PRK12380, hydrogenase/urease nickel incorporation protein	NA|163aa|down_2|NZ_CP030768.1_1065681_1066170_-	PRK10465, PRK10465, hydrogenase-2 assembly chaperone	NA|165aa|down_3|NZ_CP030768.1_1066162_1066657_-	PRK10466, hybD, HyaD/HybD family hydrogenase maturation endopeptidase	NA|568aa|down_4|NZ_CP030768.1_1066656_1068360_-	PRK10467, PRK10467, hydrogenase 2 large subunit; Provisional	NA|393aa|down_5|NZ_CP030768.1_1068356_1069535_-	PRK10881, PRK10881, Ni/Fe-hydrogenase cytochrome b subunit	NA|329aa|down_6|NZ_CP030768.1_1069524_1070511_-	PRK10882, PRK10882, hydrogenase 2 operon protein HybA	NA|373aa|down_7|NZ_CP030768.1_1070513_1071632_-	PRK10468, PRK10468, hydrogenase 2 small subunit; Provisional	NA|96aa|down_8|NZ_CP030768.1_1071820_1072108_-	pfam11115, DUF2623, Protein of unknown function (DUF2623)	NA|296aa|down_9|NZ_CP030768.1_1072226_1073114_-	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_003308975.1_ASM330897v1	NZ_CP030768	Escherichia coli strain 2017C-4173W12 chromosome, complete genome	5	2440385-2440519	5	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PD-DExK,DEDDh,DinG,cas14j	Orphan	GTGCTGTGTAGGTCGGATAAGGCGTTCATGCCGCATCCG	39	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PD-DExK,DEDDh,DinG,cas14j	NA|325aa|up_8|NZ_CP030768.1_2431753_2432728_+,NA|118aa|up_7|NZ_CP030768.1_2432743_2433097_+,NA|77aa|up_6|NZ_CP030768.1_2433083_2433314_+,NA	NA|151aa|up_9|NZ_CP030768.1_2431179_2431632_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|325aa|up_8|NZ_CP030768.1_2431753_2432728_+	NA	NA|118aa|up_7|NZ_CP030768.1_2432743_2433097_+	NA	NA|77aa|up_6|NZ_CP030768.1_2433083_2433314_+	NA	NA|335aa|up_5|NZ_CP030768.1_2433414_2434419_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP030768.1_2434580_2434997_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP030768.1_2435042_2435546_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP030768.1_2435738_2436935_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP030768.1_2436990_2439846_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP030768.1_2439845_2440289_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP030768.1_2440544_2442056_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP030768.1_2442322_2443423_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP030768.1_2443422_2444505_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP030768.1_2444665_2446168_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_4|NZ_CP030768.1_2446245_2447244_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_5|NZ_CP030768.1_2447310_2448630_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_6|NZ_CP030768.1_2448691_2449456_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|344aa|down_7|NZ_CP030768.1_2449479_2450511_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|188aa|down_8|NZ_CP030768.1_2450727_2451291_+	PRK09825, idnK, gluconokinase	NA|340aa|down_9|NZ_CP030768.1_2451294_2452314_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)
GCF_003308975.1_ASM330897v1	NZ_CP030768	Escherichia coli strain 2017C-4173W12 chromosome, complete genome	6	2609064-2609228	6	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PD-DExK,DEDDh,DinG,cas14j	Orphan	CTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGG	54	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PD-DExK,DEDDh,DinG,cas14j	NA,NA	NA|764aa|up_9|NZ_CP030768.1_2599691_2601983_-	PRK03776, PRK03776, phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase	NA|165aa|up_8|NZ_CP030768.1_2602236_2602731_-	PRK11667, PRK11667, hypothetical protein; Provisional	NA|246aa|up_7|NZ_CP030768.1_2602779_2603517_-	PRK07952, PRK07952, DNA replication protein DnaC; Validated	NA|180aa|up_6|NZ_CP030768.1_2603519_2604059_-	PRK02854, PRK02854, primosomal protein DnaT	NA|158aa|up_5|NZ_CP030768.1_2604165_2604639_-	PRK09917, PRK09917, threonine/serine exporter	NA|257aa|up_4|NZ_CP030768.1_2604629_2605400_-	COG2966, COG2966, Uncharacterized conserved protein [Function unknown]	NA|242aa|up_3|NZ_CP030768.1_2606018_2606744_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|226aa|up_2|NZ_CP030768.1_2606701_2607379_+	PRK11475, PRK11475, DNA-binding transcriptional activator BglJ; Provisional	NA|263aa|up_1|NZ_CP030768.1_2607416_2608205_-	PRK10647, PRK10647, ferric iron reductase involved in ferric hydroximate transport; Provisional	NA|79aa|up_0|NZ_CP030768.1_2608345_2608582_+	pfam07256, DUF1435, Protein of unknown function (DUF1435)	NA|344aa|down_0|NZ_CP030768.1_2609321_2610353_-	PRK09489, rsmC, 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	NA|138aa|down_1|NZ_CP030768.1_2610455_2610869_+	PRK06856, PRK06856, DNA polymerase III subunit psi; Validated	NA|149aa|down_2|NZ_CP030768.1_2610837_2611284_+	PRK09491, rimI, ribosomal-protein-alanine N-acetyltransferase; Provisional	NA|226aa|down_3|NZ_CP030768.1_2611298_2611976_+	PRK09449, PRK09449, dUMP phosphatase; Provisional	NA|530aa|down_4|NZ_CP030768.1_2612066_2613656_+	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|202aa|down_5|NZ_CP030768.1_2614048_2614654_+	PRK10568, PRK10568, molecular chaperone OsmY	NA|54aa|down_6|NZ_CP030768.1_2614780_2614942_+	COG5487, COG5487, Small integral membrane protein [Function unknown]	NA|358aa|down_7|NZ_CP030768.1_2615063_2616137_+	COG4667, COG4667, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|260aa|down_8|NZ_CP030768.1_2616133_2616913_+	PRK11449, PRK11449, metal-dependent hydrolase	NA|288aa|down_9|NZ_CP030768.1_2617431_2618295_-	TIGR04041, glycine_radical_enzyme_activase_YjjW_family, glycine radical enzyme activase, YjjW family
GCF_003308975.1_ASM330897v1	NZ_CP030768	Escherichia coli strain 2017C-4173W12 chromosome, complete genome	7	2931026-2931167	7	CRISPRCasFinder	no	RT	c2c9_V-U4,cas3,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PD-DExK,DEDDh,DinG,cas14j	Unclear	TGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAAC	41	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PD-DExK,DEDDh,DinG,cas14j	NA,NA	NA|163aa|up_9|NZ_CP030768.1_2920680_2921169_+	TIGR03765, conserved_hypothetical_protein, integrating conjugative element protein, PFL_4695 family	NA|257aa|up_8|NZ_CP030768.1_2921440_2922211_-	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional	NA|158aa|up_7|NZ_CP030768.1_2922364_2922838_+	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|815aa|up_6|NZ_CP030768.1_2922880_2925325_-	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|193aa|up_5|NZ_CP030768.1_2925564_2926143_+	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|256aa|up_4|NZ_CP030768.1_2926348_2927116_+	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|247aa|up_3|NZ_CP030768.1_2927086_2927827_-	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|250aa|up_2|NZ_CP030768.1_2928127_2928877_+	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|166aa|up_1|NZ_CP030768.1_2929053_2929551_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|405aa|up_0|NZ_CP030768.1_2929709_2930923_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|698aa|down_0|NZ_CP030768.1_2931250_2933344_-	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|380aa|down_1|NZ_CP030768.1_2933327_2934467_-	PRK05702, flhB, flagellar type III secretion system protein FlhB	NA|261aa|down_2|NZ_CP030768.1_2934456_2935239_-	COG1684, FliR, Flagellar biosynthesis pathway, component FliR [Cell motility and secretion / Intracellular trafficking and secretion]	NA|91aa|down_3|NZ_CP030768.1_2935240_2935513_-	COG1987, FliQ, Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion]	NA|251aa|down_4|NZ_CP030768.1_2935515_2936268_-	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed	NA|124aa|down_5|NZ_CP030768.1_2936264_2936636_-	TIGR02480, Flagellar_motor_switch_protein_FliN, flagellar motor switch protein FliN	NA|284aa|down_6|NZ_CP030768.1_2936628_2937480_-	pfam01052, FliMN_C, Type III flagellar switch regulator (C-ring) FliN C-term	NA|327aa|down_7|NZ_CP030768.1_2937867_2938848_+	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|114aa|down_8|NZ_CP030768.1_2938862_2939204_+	pfam02049, FliE, Flagellar hook-basal body complex protein FliE	NA|549aa|down_9|NZ_CP030768.1_2939208_2940855_+	PRK07193, fliF, flagellar MS-ring protein; Reviewed
GCF_003308975.1_ASM330897v1	NZ_CP030768	Escherichia coli strain 2017C-4173W12 chromosome, complete genome	8	3508645-3508786	8	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PD-DExK,DEDDh,DinG,cas14j	Orphan	GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	47	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PD-DExK,DEDDh,DinG,cas14j	NA|36aa|up_4|NZ_CP030768.1_3504867_3504975_-,NA	NA|354aa|up_9|NZ_CP030768.1_3498107_3499169_-	pfam00419, Fimbrial, Fimbrial protein	NA|244aa|up_8|NZ_CP030768.1_3499165_3499897_-	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|820aa|up_7|NZ_CP030768.1_3499912_3502372_-	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|189aa|up_6|NZ_CP030768.1_3502422_3502989_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|428aa|up_5|NZ_CP030768.1_3503378_3504662_-	PRK05614, gltA, citrate synthase	NA|36aa|up_4|NZ_CP030768.1_3504867_3504975_-	NA	NA|135aa|up_3|NZ_CP030768.1_3505355_3505760_+	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|116aa|up_2|NZ_CP030768.1_3505753_3506101_+	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|589aa|up_1|NZ_CP030768.1_3506100_3507867_+	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|239aa|up_0|NZ_CP030768.1_3507882_3508599_+	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|934aa|down_0|NZ_CP030768.1_3508948_3511750_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|406aa|down_1|NZ_CP030768.1_3511764_3512982_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|389aa|down_2|NZ_CP030768.1_3513256_3514423_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|290aa|down_3|NZ_CP030768.1_3514422_3515292_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|49aa|down_4|NZ_CP030768.1_3515540_3515687_+	COG2986, HutH, Histidine ammonia-lyase [Amino acid transport and metabolism]	NA|302aa|down_5|NZ_CP030768.1_3515957_3516863_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|201aa|down_6|NZ_CP030768.1_3516896_3517499_-	PRK05986, PRK05986, cob(I)yrinic acid a,c-diamide adenosyltransferase	NA|551aa|down_7|NZ_CP030768.1_3517508_3519161_-	PRK15392, PRK15392, class I fumarate hydratase	NA|427aa|down_8|NZ_CP030768.1_3519268_3520549_-	COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production and conversion]	NA|106aa|down_9|NZ_CP030768.1_3520709_3521027_-	pfam14330, DUF4387, Domain of unknown function (DUF4387)
GCF_003308975.1_ASM330897v1	NZ_CP030768	Escherichia coli strain 2017C-4173W12 chromosome, complete genome	9	3697364-3697571	4,9	PILER-CR,CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PD-DExK,DEDDh,DinG,cas14j	Orphan	GTTCACTGCCGTACAGGCAGCTTAGAAAT,GTTCACTGCCGTACAGGCAGCTTAGAAA	29,28	0	0	NA	NA	I-F:I-F	2,3	3	Orphan	c2c9_V-U4,cas3,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PD-DExK,DEDDh,DinG,cas14j	NA,NA	NA|551aa|up_9|NZ_CP030768.1_3683784_3685437_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_8|NZ_CP030768.1_3685580_3686480_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_7|NZ_CP030768.1_3686963_3687659_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|NZ_CP030768.1_3688084_3689743_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|319aa|up_5|NZ_CP030768.1_3689739_3690696_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|NZ_CP030768.1_3690846_3691962_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NZ_CP030768.1_3691958_3693905_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|NZ_CP030768.1_3693976_3694201_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|NZ_CP030768.1_3694523_3694844_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NZ_CP030768.1_3694874_3697151_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|73aa|down_0|NZ_CP030768.1_3698311_3698530_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NZ_CP030768.1_3698814_3699519_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NZ_CP030768.1_3699560_3701282_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NZ_CP030768.1_3701282_3703049_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NZ_CP030768.1_3703171_3704137_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NZ_CP030768.1_3704682_3705177_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1369aa|down_6|NZ_CP030768.1_3705311_3709418_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NZ_CP030768.1_3709576_3710188_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NZ_CP030768.1_3710198_3711542_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NZ_CP030768.1_3711632_3712925_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
