assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003312485.1_ASM331248v1	NZ_CP030778	Escherichia albertii strain 05-3106 chromosome, complete genome	1	449221-449344	1	CRISPRCasFinder	no	DEDDh	DEDDh,DinG,cas3,csa3	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,csa3	NA,NA|75aa|down_7|NZ_CP030778.1_457931_458156_-,NA|30aa|down_8|NZ_CP030778.1_458242_458332_+	NA|79aa|up_9|NZ_CP030778.1_439808_440045_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_8|NZ_CP030778.1_440355_441768_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_7|NZ_CP030778.1_442311_442521_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_6|NZ_CP030778.1_442968_443595_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_5|NZ_CP030778.1_443615_445718_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|220aa|up_4|NZ_CP030778.1_445721_446381_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_3|NZ_CP030778.1_446444_447113_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_2|NZ_CP030778.1_447109_447895_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_1|NZ_CP030778.1_447898_448711_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|102aa|up_0|NZ_CP030778.1_448774_449080_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP030778.1_449653_450910_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP030778.1_450949_452323_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP030778.1_452538_453180_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP030778.1_453225_454374_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP030778.1_454665_455877_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP030778.1_455989_456922_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP030778.1_456918_457944_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|75aa|down_7|NZ_CP030778.1_457931_458156_-	NA	NA|30aa|down_8|NZ_CP030778.1_458242_458332_+	NA	NA|194aa|down_9|NZ_CP030778.1_458623_459205_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_003312485.1_ASM331248v1	NZ_CP030778	Escherichia albertii strain 05-3106 chromosome, complete genome	2	1176544-1176691	2	CRISPRCasFinder	no		DEDDh,DinG,cas3,csa3	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC	28	0	0	NA	NA	I-F	2	2	Orphan	DEDDh,DinG,cas3,csa3	NA,NA	NA|431aa|up_9|NZ_CP030778.1_1162025_1163318_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP030778.1_1163408_1164752_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP030778.1_1164762_1165374_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1300aa|up_6|NZ_CP030778.1_1165532_1169432_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP030778.1_1169566_1170061_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP030778.1_1170605_1171571_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP030778.1_1171691_1173458_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP030778.1_1173458_1175180_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP030778.1_1175224_1175929_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP030778.1_1176213_1176432_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP030778.1_1177465_1179742_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP030778.1_1179772_1180093_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP030778.1_1180415_1180640_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP030778.1_1180711_1182658_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP030778.1_1182654_1183770_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|331aa|down_5|NZ_CP030778.1_1183884_1184877_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP030778.1_1184873_1186532_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP030778.1_1186956_1187652_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP030778.1_1188146_1189046_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP030778.1_1189189_1190842_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_003312485.1_ASM331248v1	NZ_CP030778	Escherichia albertii strain 05-3106 chromosome, complete genome	3	1386788-1386918	3	CRISPRCasFinder	no		DEDDh,DinG,cas3,csa3	Orphan	CTTTTGTAGGCCGGATAAGGCATTCACGCCGCATCC	36	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,csa3	NA|315aa|up_5|NZ_CP030778.1_1377499_1378444_+,NA|259aa|up_4|NZ_CP030778.1_1379390_1380167_+,NA|62aa|down_4|NZ_CP030778.1_1390731_1390917_-	NA|98aa|up_9|NZ_CP030778.1_1373550_1373844_-	PRK10588, PRK10588, hypothetical protein; Provisional	NA|38aa|up_8|NZ_CP030778.1_1373843_1373957_-	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown]	NA|380aa|up_7|NZ_CP030778.1_1373971_1375111_-	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II	NA|523aa|up_6|NZ_CP030778.1_1375126_1376695_-	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA	NA|315aa|up_5|NZ_CP030778.1_1377499_1378444_+	NA	NA|259aa|up_4|NZ_CP030778.1_1379390_1380167_+	NA	NA|290aa|up_3|NZ_CP030778.1_1380264_1381134_-	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|389aa|up_2|NZ_CP030778.1_1381133_1382300_-	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|405aa|up_1|NZ_CP030778.1_1382575_1383790_-	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|934aa|up_0|NZ_CP030778.1_1383804_1386606_-	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|239aa|down_0|NZ_CP030778.1_1386966_1387683_-	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|589aa|down_1|NZ_CP030778.1_1387698_1389465_-	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|116aa|down_2|NZ_CP030778.1_1389464_1389812_-	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|130aa|down_3|NZ_CP030778.1_1389805_1390195_-	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|62aa|down_4|NZ_CP030778.1_1390731_1390917_-	NA	NA|428aa|down_5|NZ_CP030778.1_1390904_1392188_+	PRK05614, gltA, citrate synthase	NA|437aa|down_6|NZ_CP030778.1_1392233_1393544_-	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]	NA|154aa|down_7|NZ_CP030778.1_1393543_1394005_-	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]	NA|323aa|down_8|NZ_CP030778.1_1394064_1395033_-	cd13669, PBP2_TRAP_TM0322_like, Periplasmic component of TRAP-type C4-dicarboxylate transport system TM0322 from Thermotoga maritima and similar proteins; the type 2 periplasmic binding protein fold	NA|399aa|down_9|NZ_CP030778.1_1395060_1396257_-	pfam04295, GD_AH_C, D-galactarate dehydratase / Altronate hydrolase, C-terminus
GCF_003312485.1_ASM331248v1	NZ_CP030778	Escherichia albertii strain 05-3106 chromosome, complete genome	4	3992552-3992694	4	CRISPRCasFinder	no		DEDDh,DinG,cas3,csa3	Orphan	ATGATGTGACCAACACATGCGTTCCCCGTAGGTCGGATAAGACGCGT	47	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,csa3	NA|252aa|up_4|NZ_CP030778.1_3986886_3987642_+,NA|143aa|up_1|NZ_CP030778.1_3988622_3989051_-,NA	NA|570aa|up_9|NZ_CP030778.1_3982945_3984655_+	COG3261, HycE, Ni,Fe-hydrogenase III large subunit [Energy production and conversion]	NA|181aa|up_8|NZ_CP030778.1_3984664_3985207_+	PRK12387, PRK12387, formate hydrogenlyase complex iron-sulfur subunit; Provisional	NA|256aa|up_7|NZ_CP030778.1_3985206_3985974_+	COG3260, COG3260, Ni,Fe-hydrogenase III small subunit [Energy production and conversion]	NA|137aa|up_6|NZ_CP030778.1_3985970_3986381_+	PRK15084, PRK15084, formate hydrogenlyase maturation protein HycH; Provisional	NA|157aa|up_5|NZ_CP030778.1_3986373_3986844_+	PRK11544, hycI, hydrogenase 3 maturation protease; Provisional	NA|252aa|up_4|NZ_CP030778.1_3986886_3987642_+	NA	NA|104aa|up_3|NZ_CP030778.1_3987803_3988115_+	COG4680, COG4680, Uncharacterized protein conserved in bacteria [Function unknown]	NA|140aa|up_2|NZ_CP030778.1_3988111_3988531_+	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription]	NA|143aa|up_1|NZ_CP030778.1_3988622_3989051_-	NA	NA|176aa|up_0|NZ_CP030778.1_3989479_3990007_+	PRK10330, PRK10330, electron transport protein HydN	NA|378aa|down_0|NZ_CP030778.1_3992717_3993851_-	PRK04965, PRK04965, NADH:flavorubredoxin reductase NorW	NA|480aa|down_1|NZ_CP030778.1_3993847_3995287_-	PRK05452, PRK05452, anaerobic nitric oxide reductase flavorubredoxin; Provisional	NA|505aa|down_2|NZ_CP030778.1_3995473_3996988_+	PRK05022, PRK05022, nitric oxide reductase transcriptional regulator NorR	NA|322aa|down_3|NZ_CP030778.1_3996984_3997950_-	PRK11543, gutQ, arabinose-5-phosphate isomerase GutQ	NA|362aa|down_4|NZ_CP030778.1_3998202_3999288_+	PRK10760, PRK10760, murein hydrolase B; Provisional	NA|166aa|down_5|NZ_CP030778.1_3999748_4000246_+	PRK03661, PRK03661, nicotinamide-nucleotide amidase	NA|354aa|down_6|NZ_CP030778.1_4000325_4001387_+	PRK09354, recA, recombinase A; Provisional	NA|167aa|down_7|NZ_CP030778.1_4001625_4002126_+	PRK00117, recX, recombination regulator RecX; Reviewed	NA|877aa|down_8|NZ_CP030778.1_4002254_4004885_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|62aa|down_9|NZ_CP030778.1_4005119_4005305_+	PRK01712, PRK01712, carbon storage regulator CsrA
GCF_003312485.1_ASM331248v1	NZ_CP030778	Escherichia albertii strain 05-3106 chromosome, complete genome	5	4341995-4342083	5	CRISPRCasFinder	no		DEDDh,DinG,cas3,csa3	Orphan	GGTTGTCCAACGGTTGTCCAACG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,csa3	NA|99aa|up_6|NZ_CP030778.1_4338354_4338651_-,NA|100aa|up_4|NZ_CP030778.1_4338969_4339269_-,NA|123aa|up_3|NZ_CP030778.1_4339637_4340006_-,NA|90aa|down_6|NZ_CP030778.1_4345671_4345941_+	NA|99aa|up_9|NZ_CP030778.1_4335885_4336182_-	pfam11043, DUF2856, Protein of unknown function (DUF2856)	NA|169aa|up_8|NZ_CP030778.1_4336195_4336702_-	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional	NA|236aa|up_7|NZ_CP030778.1_4336702_4337410_-	COG4712, COG4712, Uncharacterized protein conserved in bacteria [Function unknown]	NA|99aa|up_6|NZ_CP030778.1_4338354_4338651_-	NA	NA|67aa|up_5|NZ_CP030778.1_4338690_4338891_-	pfam11058, Ral, Antirestriction protein Ral	NA|100aa|up_4|NZ_CP030778.1_4338969_4339269_-	NA	NA|123aa|up_3|NZ_CP030778.1_4339637_4340006_-	NA	NA|239aa|up_2|NZ_CP030778.1_4340023_4340740_-	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|65aa|up_1|NZ_CP030778.1_4340846_4341041_+	pfam09048, Cro, Cro	NA|93aa|up_0|NZ_CP030778.1_4341149_4341428_+	pfam05269, Phage_CII, Bacteriophage CII protein	NA|484aa|down_0|NZ_CP030778.1_4342475_4343927_+	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|153aa|down_1|NZ_CP030778.1_4343985_4344444_+	pfam05772, NinB, NinB protein	NA|176aa|down_2|NZ_CP030778.1_4344440_4344968_+	TIGR01712, DNA_N-6-adenine-methyltransferase_M	NA|59aa|down_3|NZ_CP030778.1_4344964_4345141_+	pfam05322, NinE, NINE Protein	NA|120aa|down_4|NZ_CP030778.1_4345143_4345503_+	PHA01519, PHA01519, hypothetical protein	NA|59aa|down_5|NZ_CP030778.1_4345502_4345679_+	pfam05810, NinF, NinF protein	NA|90aa|down_6|NZ_CP030778.1_4345671_4345941_+	NA	NA|204aa|down_7|NZ_CP030778.1_4345940_4346552_+	pfam05766, NinG, Bacteriophage Lambda NinG protein	NA|69aa|down_8|NZ_CP030778.1_4346548_4346755_+	pfam06322, Phage_NinH, Phage NinH protein	NA|222aa|down_9|NZ_CP030778.1_4346732_4347398_+	cd07424, MPP_PrpA_PrpB, PrpA and PrpB, metallophosphatase domain
