assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003312545.1_ASM331254v1	NZ_CP030787	Escherichia albertii strain 2013C-4143 chromosome, complete genome	1	729638-729749	1	CRISPRCasFinder	no		DEDDh,DinG,cas1,cas3f,cas3,csa3	Orphan	CATCAGGCAACGGCGCATGATTGCTGTATGCGGC	34	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas1,cas3f,cas3,csa3	NA,NA	NA|305aa|up_9|NZ_CP030787.1_717345_718260_+	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|122aa|up_8|NZ_CP030787.1_718282_718648_+	pfam05656, DUF805, Protein of unknown function (DUF805)	NA|274aa|up_7|NZ_CP030787.1_718807_719629_+	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|383aa|up_6|NZ_CP030787.1_720084_721233_+	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|1074aa|up_5|NZ_CP030787.1_721250_724472_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|132aa|up_4|NZ_CP030787.1_724731_725127_+	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|197aa|up_3|NZ_CP030787.1_725210_725801_-	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|262aa|up_2|NZ_CP030787.1_725807_726593_-	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|518aa|up_1|NZ_CP030787.1_726702_728256_-	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|406aa|up_0|NZ_CP030787.1_728328_729546_-	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|381aa|down_0|NZ_CP030787.1_729812_730955_-	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|505aa|down_1|NZ_CP030787.1_730985_732500_-	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|257aa|down_2|NZ_CP030787.1_732982_733753_+	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|314aa|down_3|NZ_CP030787.1_733767_734709_+	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|429aa|down_4|NZ_CP030787.1_734759_736046_+	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|96aa|down_5|NZ_CP030787.1_736042_736330_+	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|444aa|down_6|NZ_CP030787.1_736501_737833_+	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|177aa|down_7|NZ_CP030787.1_737940_738471_+	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|620aa|down_8|NZ_CP030787.1_738463_740323_+	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|160aa|down_9|NZ_CP030787.1_740517_740997_+	PRK10769, folA, type 3 dihydrofolate reductase
GCF_003312545.1_ASM331254v1	NZ_CP030787	Escherichia albertii strain 2013C-4143 chromosome, complete genome	2	1636077-1636159	2	CRISPRCasFinder	no	cas1,cas3f	DEDDh,DinG,cas1,cas3f,cas3,csa3	Unclear	GTTCACTGCCGTACAGGCAGCTT	23	0	0	NA	NA	I-F	1	1	Unclear	DEDDh,DinG,cas1,cas3f,cas3,csa3	NA,NA	NA|551aa|up_9|NZ_CP030787.1_1622363_1624016_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_8|NZ_CP030787.1_1624159_1625059_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_7|NZ_CP030787.1_1625554_1626250_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|NZ_CP030787.1_1626674_1628333_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|331aa|up_5|NZ_CP030787.1_1628329_1629322_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|NZ_CP030787.1_1629436_1630552_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NZ_CP030787.1_1630548_1632495_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|NZ_CP030787.1_1632566_1632791_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|NZ_CP030787.1_1633113_1633434_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NZ_CP030787.1_1633464_1635741_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	cas1|328aa|down_0|NZ_CP030787.1_1636334_1637318_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1078aa|down_1|NZ_CP030787.1_1637314_1640548_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	NA|232aa|down_2|NZ_CP030787.1_1641054_1641749_-	pfam03400, DDE_Tnp_IS1, IS1 transposase	NA|145aa|down_3|NZ_CP030787.1_1642235_1642670_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|73aa|down_4|NZ_CP030787.1_1644050_1644269_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_5|NZ_CP030787.1_1644553_1645258_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_6|NZ_CP030787.1_1645302_1647024_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_7|NZ_CP030787.1_1647024_1648791_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_8|NZ_CP030787.1_1648911_1649877_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_9|NZ_CP030787.1_1650421_1650916_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp
GCF_003312545.1_ASM331254v1	NZ_CP030787	Escherichia albertii strain 2013C-4143 chromosome, complete genome	3	1643791-1643939	3	CRISPRCasFinder	no	cas1,cas3f	DEDDh,DinG,cas1,cas3f,cas3,csa3	Unclear	GTTCACTGCCGTACAGGCAGCTTAGAAA	28	0	0	NA	NA	I-F	2	2	Unclear	DEDDh,DinG,cas1,cas3f,cas3,csa3	NA,NA	NA|331aa|up_9|NZ_CP030787.1_1628329_1629322_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_8|NZ_CP030787.1_1629436_1630552_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_7|NZ_CP030787.1_1630548_1632495_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_6|NZ_CP030787.1_1632566_1632791_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_5|NZ_CP030787.1_1633113_1633434_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_4|NZ_CP030787.1_1633464_1635741_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	cas1|328aa|up_3|NZ_CP030787.1_1636334_1637318_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1078aa|up_2|NZ_CP030787.1_1637314_1640548_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	NA|232aa|up_1|NZ_CP030787.1_1641054_1641749_-	pfam03400, DDE_Tnp_IS1, IS1 transposase	NA|145aa|up_0|NZ_CP030787.1_1642235_1642670_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|73aa|down_0|NZ_CP030787.1_1644050_1644269_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NZ_CP030787.1_1644553_1645258_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NZ_CP030787.1_1645302_1647024_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NZ_CP030787.1_1647024_1648791_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NZ_CP030787.1_1648911_1649877_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NZ_CP030787.1_1650421_1650916_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1310aa|down_6|NZ_CP030787.1_1651050_1654980_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NZ_CP030787.1_1655138_1655750_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NZ_CP030787.1_1655760_1657104_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NZ_CP030787.1_1657194_1658487_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_003312545.1_ASM331254v1	NZ_CP030787	Escherichia albertii strain 2013C-4143 chromosome, complete genome	4	3044677-3044795	4	CRISPRCasFinder	no		DEDDh,DinG,cas1,cas3f,cas3,csa3	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGG	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas1,cas3f,cas3,csa3	NA|61aa|up_1|NZ_CP030787.1_3042159_3042342_-,NA	NA|259aa|up_9|NZ_CP030787.1_3024822_3025599_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|546aa|up_8|NZ_CP030787.1_3025603_3027241_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1535aa|up_7|NZ_CP030787.1_3027241_3031846_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_6|NZ_CP030787.1_3031779_3032403_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|566aa|up_5|NZ_CP030787.1_3032399_3034097_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_4|NZ_CP030787.1_3034245_3036873_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_3|NZ_CP030787.1_3037019_3037742_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1257aa|up_2|NZ_CP030787.1_3037882_3041653_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|61aa|up_1|NZ_CP030787.1_3042159_3042342_-	NA	NA|762aa|up_0|NZ_CP030787.1_3042340_3044626_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP030787.1_3044852_3045983_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP030787.1_3045982_3046237_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|360aa|down_2|NZ_CP030787.1_3046321_3047401_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_3|NZ_CP030787.1_3047405_3048764_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_4|NZ_CP030787.1_3049037_3050666_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_5|NZ_CP030787.1_3050655_3051915_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_6|NZ_CP030787.1_3051911_3053102_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|313aa|down_7|NZ_CP030787.1_3053295_3054234_+	PRK09956, PRK09956, ISNCY family transposase	NA|268aa|down_8|NZ_CP030787.1_3054276_3055080_-	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	NA|430aa|down_9|NZ_CP030787.1_3055096_3056386_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily
GCF_003312545.1_ASM331254v1	NZ_CP030787	Escherichia albertii strain 2013C-4143 chromosome, complete genome	5	3564474-3564606	5	CRISPRCasFinder	no		DEDDh,DinG,cas1,cas3f,cas3,csa3	Orphan	CCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAA	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas1,cas3f,cas3,csa3	NA,NA	NA|346aa|up_9|NZ_CP030787.1_3554417_3555455_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|51aa|up_8|NZ_CP030787.1_3555580_3555733_-	pfam01848, HOK_GEF, Hok/gef family	NA|401aa|up_7|NZ_CP030787.1_3555794_3556997_+	pfam00665, rve, Integrase core domain	NA|245aa|up_6|NZ_CP030787.1_3557097_3557832_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_5|NZ_CP030787.1_3558011_3559724_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_4|NZ_CP030787.1_3559723_3561523_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|up_3|NZ_CP030787.1_3561838_3562204_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|424aa|up_2|NZ_CP030787.1_3562281_3563553_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_1|NZ_CP030787.1_3563543_3563804_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_0|NZ_CP030787.1_3563820_3564396_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|down_0|NZ_CP030787.1_3564663_3565524_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|259aa|down_1|NZ_CP030787.1_3565520_3566297_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|down_2|NZ_CP030787.1_3566274_3567612_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|down_3|NZ_CP030787.1_3567705_3569160_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|down_4|NZ_CP030787.1_3569229_3570015_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|down_5|NZ_CP030787.1_3570332_3571610_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|down_6|NZ_CP030787.1_3571636_3573115_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_7|NZ_CP030787.1_3573527_3574199_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|201aa|down_8|NZ_CP030787.1_3574370_3574973_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|294aa|down_9|NZ_CP030787.1_3574986_3575868_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
