The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011846	Clostridioides difficile strain DSM 27638 chromosome, complete genome	4229698	285644	301830	4229698		Synechococcus_phage(23.08%)	14	NA	NA
WP_009888043.1|285644_286157_-	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	87.1	2.3e-83
WP_003425290.1|286606_287083_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
WP_003420966.1|287088_287787_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
WP_003425288.1|287798_289166_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
WP_003425286.1|289159_290236_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	1.7e-64
WP_003436064.1|290229_290823_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	4.3e-25
WP_009892582.1|290815_292348_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
WP_009888045.1|292358_293609_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_009888046.1|293633_297440_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	24.1	3.0e-31
WP_009888047.1|297645_298518_+	dTDP-4-dehydrorhamnose reductase	NA	H9NCE8	Sphingomonas_phage	30.0	3.8e-14
WP_009888048.1|298626_299508_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	61.9	8.2e-97
WP_009888049.1|299544_300102_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.0	1.3e-47
WP_009888050.1|300139_301123_+	dTDP-glucose 4,6-dehydratase	NA	A0A291LAD7	Escherichia_phage	47.9	9.2e-81
WP_009888051.1|301161_301830_+	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	47.7	4.1e-24
>prophage 2
NZ_CP011846	Clostridioides difficile strain DSM 27638 chromosome, complete genome	4229698	588707	659486	4229698	coat,protease,transposase,tRNA	Streptococcus_phage(33.33%)	55	NA	NA
WP_003425122.1|588707_589424_+|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003436985.1|589502_590813_+	methylase	NA	NA	NA	NA	NA
WP_003425127.1|590912_591449_+	signal peptidase I	NA	NA	NA	NA	NA
WP_003425129.1|591614_592151_+	signal peptidase I	NA	NA	NA	NA	NA
WP_009888346.1|592160_592916_+	TIM barrel protein	NA	NA	NA	NA	NA
WP_009888347.1|592989_594657_+	nucleoside kinase	NA	NA	NA	NA	NA
WP_003417962.1|595285_596215_+	glutaminase A	NA	NA	NA	NA	NA
WP_003417965.1|596312_596876_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_009888348.1|597363_598200_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.5	2.1e-30
WP_009888349.1|598451_599447_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_009888350.1|599703_600108_-	RusA family crossover junction endodeoxyribonuclease	NA	NA	NA	NA	NA
WP_009888351.1|601107_602022_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_009888352.1|602127_604365_+	ATP-binding protein	NA	A0A2H4UU76	Bodo_saltans_virus	32.7	9.9e-06
WP_025984766.1|604996_605614_+	endonuclease III	NA	NA	NA	NA	NA
WP_003429657.1|605807_606278_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_009888355.1|606313_607162_+	DegV family protein	NA	NA	NA	NA	NA
WP_009892666.1|607534_608539_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_009888358.1|608663_609776_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003439005.1|610198_610960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003417993.1|610962_611781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003439009.1|611960_612563_+	DUF445 family protein	NA	NA	NA	NA	NA
WP_009888359.1|613425_615345_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	39.9	1.3e-144
WP_100882489.1|616774_616924_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012816012.1|617280_618399_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0H3UZC2	Geobacillus_virus	53.2	2.2e-110
WP_009888362.1|619396_620434_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_009888364.1|620426_621113_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888365.1|621124_621445_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_009888366.1|621805_623146_+	sensor histidine kinase	NA	X5JAC0	Clostridium_phage	38.8	2.4e-79
WP_009888368.1|623823_624393_-	hydrolase	NA	NA	NA	NA	NA
WP_009888369.1|624553_625804_-	MFS transporter	NA	NA	NA	NA	NA
WP_074014400.1|626095_626683_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009888371.1|627004_628465_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_003429639.1|628838_629444_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009888372.1|629446_632014_+	pyruvate, phosphate dikinase	NA	A0A1V0SGR7	Hokovirus	39.6	4.1e-48
WP_003437599.1|632006_632171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888376.1|633279_633555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429630.1|633574_633862_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009892676.1|635416_636526_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0H3UZC2	Geobacillus_virus	53.8	3.1e-109
WP_009888381.1|636590_638714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888382.1|638728_643939_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888383.1|644163_646263_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	28.8	2.2e-68
WP_009892678.1|646305_646701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003438914.1|647761_647950_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888386.1|648134_648575_-	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
WP_009888387.1|648910_650224_+	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	41.0	1.6e-93
WP_009888388.1|650241_650778_+	ParB-like nuclease domain-containing protein	NA	A0A220GKT8	Streptococcus_phage	70.3	4.2e-64
WP_009888389.1|651296_651518_+|coat	spore coat associated protein CotJA	coat	NA	NA	NA	NA
WP_009888390.1|651517_651781_+|coat	spore coat protein CotJB	coat	NA	NA	NA	NA
WP_003418062.1|651842_652415_+	manganese catalase family protein	NA	NA	NA	NA	NA
WP_009888391.1|653232_653766_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	50.0	7.0e-35
WP_009888392.1|653990_654170_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_012816016.1|654776_655025_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888395.1|655872_656286_+	DUF3795 domain-containing protein	NA	NA	NA	NA	NA
WP_009888396.1|656360_656870_+	GrpB family protein	NA	NA	NA	NA	NA
WP_009888399.1|658376_659486_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0H3UZC2	Geobacillus_virus	54.3	6.6e-112
>prophage 3
NZ_CP011846	Clostridioides difficile strain DSM 27638 chromosome, complete genome	4229698	1389875	1462460	4229698	portal,tRNA,protease,integrase,plate,tail	Clostridium_phage(44.44%)	70	1384280:1384298	1427427:1427445
1384280:1384298	attL	ATGAAAAAAAATTTAGAAG	NA	NA	NA	NA
WP_009889097.1|1389875_1390781_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_009889098.1|1390911_1391841_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_011861174.1|1391840_1391939_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003419491.1|1391944_1392202_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_009889099.1|1392441_1393287_+	DegV family protein	NA	NA	NA	NA	NA
WP_003438316.1|1393411_1395523_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003438319.1|1395788_1396532_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_009889101.1|1396689_1397937_+	insulinase family protein	NA	G3MBJ8	Bacillus_virus	35.1	6.6e-52
WP_003419503.1|1397971_1398217_+	YlmC/YmxH family sporulation protein	NA	NA	NA	NA	NA
WP_009889103.1|1398226_1399450_+	aspartate kinase	NA	NA	NA	NA	NA
WP_003428224.1|1399562_1400297_+|protease	Clp protease	protease	NA	NA	NA	NA
WP_009889104.1|1400419_1402831_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.4	3.3e-92
WP_009889105.1|1402833_1403892_+|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
WP_009892976.1|1403885_1405220_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_009889106.1|1405206_1405749_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003428218.1|1406036_1407083_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	63.5	2.7e-123
WP_003428216.1|1407258_1408800_+	ribonuclease Y	NA	NA	NA	NA	NA
WP_003438344.1|1409434_1411216_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_009889109.1|1411866_1412691_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_009889110.1|1412947_1413856_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_009889111.1|1413999_1415445_+	adenylosuccinate lyase	NA	NA	NA	NA	NA
WP_003419561.1|1415755_1416208_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009889112.1|1416620_1418198_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_009892977.1|1418356_1419109_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011861180.1|1419247_1420588_+	6-phospho-alpha-glucosidase	NA	NA	NA	NA	NA
WP_003438357.1|1420699_1421896_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_009889113.1|1422280_1423231_+	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_003438367.1|1423391_1424144_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	45.6	1.9e-57
WP_009889114.1|1424235_1425012_-	exonuclease domain-containing protein	NA	NA	NA	NA	NA
WP_003428202.1|1425326_1427225_+	glutamine synthetase	NA	NA	NA	NA	NA
WP_003428201.1|1427352_1428474_-	galactosyldiacylglycerol synthase	NA	NA	NA	NA	NA
1427427:1427445	attR	CTTCTAAATTTTTTTTCAT	NA	NA	NA	NA
WP_009889116.1|1428672_1429005_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012816112.1|1428991_1430050_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_009889118.1|1430042_1431113_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_003428196.1|1431214_1431751_+	lipoprotein	NA	NA	NA	NA	NA
WP_009889121.1|1431867_1432575_+	lantibiotic protection ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	48.0	3.6e-55
WP_009889122.1|1432576_1433293_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA	NA
WP_009889124.1|1433294_1434053_+	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA	NA
WP_009889126.1|1434196_1435585_+	two-component system sensor histidine kinase	NA	NA	NA	NA	NA
WP_003428191.1|1435660_1436482_-	pyridoxamine kinase	NA	NA	NA	NA	NA
WP_009892989.1|1436732_1437887_+	amidase domain-containing protein	NA	NA	NA	NA	NA
WP_003419624.1|1438069_1438270_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
WP_009889129.1|1438690_1439119_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_009889131.1|1439261_1440017_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_009889132.1|1440137_1440554_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003428186.1|1440717_1441224_-	hypothetical protein	NA	A0A0A8WEK1	Clostridium_phage	67.1	4.0e-56
WP_003428185.1|1441305_1441626_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
WP_003419641.1|1441794_1441992_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_009889133.1|1442096_1442537_+	hypothetical protein	NA	A0A090EUN5	Clostridium_phage	51.4	4.6e-32
WP_009889135.1|1442785_1443229_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	36.7	7.6e-19
WP_009889137.1|1443233_1444298_+|portal	phage portal protein	portal	A0A1V0DZX4	Clostridioides_phage	52.8	2.6e-97
WP_003419646.1|1444311_1444740_+|tail	phage tail tube protein	tail	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
WP_009889139.1|1444853_1445300_+|portal	phage portal protein	portal	A0A0A7RTP2	Clostridium_phage	36.4	1.1e-12
WP_003419648.1|1445326_1445494_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009889141.1|1445493_1447947_+	hypothetical protein	NA	A0A1V0DZX3	Clostridioides_phage	61.0	6.1e-17
WP_009889143.1|1447946_1448369_+	hypothetical protein	NA	A0A090DBR9	Clostridium_phage	70.4	2.2e-52
WP_009889145.1|1448650_1450180_+	cell wall XkdQ hydrolase	NA	A0A1V0DZX6	Clostridioides_phage	81.1	1.0e-243
WP_003438447.1|1450195_1450522_+	DUF2577 domain-containing protein	NA	J9QE86	Clostridium_phage	94.4	1.0e-52
WP_003428161.1|1450521_1450950_+	DUF2634 domain-containing protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	5.8e-64
WP_009889148.1|1450942_1451995_+|plate	baseplate J/gp47 family protein	plate	A0A0A8WFP3	Clostridium_phage	71.3	9.3e-140
WP_009889149.1|1451991_1452690_+	DUF2313 domain-containing protein	NA	A0A090D815	Clostridium_phage	56.9	3.3e-48
WP_009889153.1|1452690_1453677_+|tail	phage tail protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	45.8	3.4e-59
WP_009892995.1|1453698_1458876_+	chromosome condensation regulator	NA	A0A0A8WEY5	Clostridium_phage	28.3	8.2e-88
WP_009889155.1|1458892_1459246_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	4.2e-12
WP_003419670.1|1459508_1459769_+	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
WP_003419674.1|1459993_1460449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003438466.1|1460676_1461096_-	helix-turn-helix transcriptional regulator	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
WP_003428146.1|1461394_1461604_+	helix-turn-helix transcriptional regulator	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
WP_003428145.1|1461623_1461845_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009889162.1|1462061_1462460_-	helix-turn-helix domain-containing protein	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
>prophage 4
NZ_CP011846	Clostridioides difficile strain DSM 27638 chromosome, complete genome	4229698	1545152	1553697	4229698		Pandoravirus(33.33%)	10	NA	NA
WP_009889249.1|1545152_1545737_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	52.6	4.2e-57
WP_074014342.1|1545729_1547088_+	aminodeoxychorismate synthase component I	NA	S4VNU7	Pandoravirus	41.2	3.0e-37
WP_003438634.1|1547077_1547821_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
WP_009889253.1|1547854_1548556_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429416.1|1548581_1549154_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
WP_012816129.1|1549207_1550011_+	dihydropteroate synthase	NA	S4W084	Pandoravirus	28.6	2.4e-23
WP_009889257.1|1550021_1550387_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_009889259.1|1550379_1550886_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_009893063.1|1550866_1551652_+	3-deoxy-7-phosphoheptulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.0e-13
WP_009893065.1|1551906_1553697_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.8	5.6e-52
>prophage 5
NZ_CP011846	Clostridioides difficile strain DSM 27638 chromosome, complete genome	4229698	1681111	1736242	4229698	portal,integrase,plate,tail,holin,terminase	Clostridium_phage(78.57%)	68	1675114:1675129	1684334:1684349
1675114:1675129	attL	ATATAAAAGAGCAGAT	NA	NA	NA	NA
WP_003429803.1|1681111_1682242_-|integrase	site-specific integrase	integrase	A0A0A8WIE1	Clostridium_phage	99.7	2.9e-216
WP_009888800.1|1682320_1683028_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888801.1|1683040_1683910_-	protein kinase	NA	NA	NA	NA	NA
WP_003429804.1|1684529_1685036_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A8WEK1	Clostridium_phage	100.0	1.5e-87
1684334:1684349	attR	ATATAAAAGAGCAGAT	NA	NA	NA	NA
WP_009893126.1|1685111_1685660_-	helix-turn-helix domain-containing protein	NA	A0A0A8WJ60	Clostridium_phage	98.4	2.2e-92
WP_009888806.1|1685671_1686013_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	100.0	7.6e-59
WP_009893129.1|1686189_1686393_+	helix-turn-helix domain-containing protein	NA	A0A0A8WHR3	Clostridium_phage	100.0	3.7e-29
WP_009888810.1|1686440_1687250_+	phage antirepressor	NA	A0A0A8WIE3	Clostridium_phage	97.4	1.0e-146
WP_009888812.1|1687296_1687506_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003433505.1|1687515_1687890_-	hypothetical protein	NA	A0A1L5C299	Pseudoalteromonas_phage	37.1	2.2e-11
WP_009888813.1|1687965_1688163_+	helix-turn-helix transcriptional regulator	NA	A0A0A8WE47	Clostridium_phage	92.3	2.9e-26
WP_009888815.1|1688193_1688586_+	helix-turn-helix domain-containing protein	NA	A0A0A8WHS2	Clostridium_phage	93.0	9.6e-58
WP_003429817.1|1688566_1688716_+	hypothetical protein	NA	A0A0A8WIF8	Clostridium_phage	89.4	4.2e-14
WP_003433513.1|1688786_1689224_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888818.1|1689235_1690402_+	DUF2800 domain-containing protein	NA	S5MUB5	Brevibacillus_phage	55.9	1.5e-117
WP_009888819.1|1690416_1690752_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429822.1|1690804_1691377_+	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA	NA
WP_003433516.1|1691399_1691972_+	DUF2815 family protein	NA	S5MC21	Brevibacillus_phage	66.7	8.5e-63
WP_009888821.1|1691971_1693930_+	DNA polymerase	NA	A0A0A7RTL3	Clostridium_phage	69.1	7.8e-265
WP_009888822.1|1693941_1696359_+	virulence-associated protein E	NA	A0A0A7RTG3	Clostridium_phage	67.7	0.0e+00
WP_003433522.1|1696640_1696967_+	VRR-NUC domain-containing protein	NA	A0A2K5B272	Erysipelothrix_phage	55.4	8.7e-20
WP_009888823.1|1696915_1698286_+	DEAD/DEAH box helicase	NA	A0A1S7FYY5	Listeria_phage	60.0	8.4e-157
WP_009888825.1|1698439_1698919_+	hypothetical protein	NA	I2E8Y5	Clostridium_phage	51.0	4.4e-36
WP_009888827.1|1699945_1700920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429834.1|1700940_1701450_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888829.1|1701519_1702212_+	helix-turn-helix domain-containing protein	NA	A0A0A8WFS6	Clostridium_phage	97.0	7.0e-120
WP_009888830.1|1702201_1703443_+|terminase	PBSX family phage terminase large subunit	terminase	X5JAB3	Clostridium_phage	98.3	1.1e-243
WP_009888831.1|1703448_1704891_+|portal	phage portal protein	portal	A0A0A8WIH2	Clostridium_phage	97.7	3.0e-274
WP_009893134.1|1704880_1706416_+	hypothetical protein	NA	X5JAI9	Clostridium_phage	71.9	2.5e-194
WP_009888832.1|1706417_1706666_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888833.1|1706733_1707297_+	scaffold protein	NA	A0A0A8WFU8	Clostridium_phage	93.6	6.0e-85
WP_009888834.1|1707308_1708199_+	hypothetical protein	NA	X5J9Z5	Clostridium_phage	99.3	1.4e-165
WP_009888835.1|1708217_1708451_+	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	93.5	4.6e-31
WP_009888836.1|1708460_1708862_+	hypothetical protein	NA	X5JAJ0	Clostridium_phage	97.0	8.1e-68
WP_003433540.1|1708855_1709203_+	hypothetical protein	NA	X5JAV9	Clostridium_phage	99.1	1.1e-57
WP_009893135.1|1709202_1709493_+	HK97 gp10 family phage protein	NA	A0A0A8WFV8	Clostridium_phage	96.7	4.1e-45
WP_009888838.1|1709602_1710409_+	hypothetical protein	NA	F8UBL7	Clostridium_phage	48.0	2.4e-47
WP_009888839.1|1710757_1711195_+	hypothetical protein	NA	A0A0A8WJT3	Clostridium_phage	95.2	3.3e-75
WP_009888840.1|1711187_1711364_+	hypothetical protein	NA	X5J9Z6	Clostridium_phage	93.1	1.1e-21
WP_009893136.1|1711364_1712675_+	hypothetical protein	NA	X5JAJ1	Clostridium_phage	92.7	8.1e-234
WP_009888842.1|1712691_1713162_+|tail	phage tail tube protein	tail	A0A0A8WJ62	Clostridium_phage	81.3	1.3e-69
WP_009888843.1|1713220_1714048_+	hypothetical protein	NA	A0A2R4P8H7	Staphylococcus_phage	48.3	1.8e-45
WP_003429853.1|1714119_1714560_+|portal	phage portal protein	portal	X5JAB6	Clostridium_phage	63.7	8.6e-47
WP_011861033.1|1714559_1714754_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429855.1|1714900_1715062_+	hypothetical protein	NA	A0A0A8WE04	Clostridium_phage	84.3	1.2e-14
WP_003429858.1|1716398_1716587_+	hypothetical protein	NA	X5JAJ2	Clostridium_phage	96.8	2.2e-23
WP_009888845.1|1716705_1717572_+	hypothetical protein	NA	X5JAW1	Clostridium_phage	80.1	3.2e-130
WP_009888846.1|1717624_1717759_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888847.1|1718436_1718964_+	DUF4352 domain-containing protein	NA	A0A0A8WJ63	Clostridium_phage	97.1	8.7e-62
WP_009888848.1|1719101_1719869_+	DUF4428 domain-containing protein	NA	X5JB37	Clostridium_phage	44.4	6.3e-45
WP_009893138.1|1719934_1722307_+	tape measure protein	NA	X5JAB7	Clostridium_phage	41.5	8.8e-146
WP_009888849.1|1722323_1723013_+	LysM peptidoglycan-binding domain-containing protein	NA	X5J9Z8	Clostridium_phage	94.8	2.0e-119
WP_009893140.1|1723005_1724898_+	cell wall hydrolase	NA	A3QSB3	Clostridium_virus	94.8	0.0e+00
WP_009893142.1|1724911_1725172_+	DUF2577 domain-containing protein	NA	A0A0A8WJ65	Clostridium_phage	86.0	1.4e-33
WP_009888851.1|1725176_1725596_+	DUF2634 domain-containing protein	NA	A0A0A8WJV8	Clostridium_phage	95.7	1.3e-71
WP_009888852.1|1725596_1726646_+|plate	baseplate J/gp47 family protein	plate	A0A0A8WFK0	Clostridium_phage	94.8	1.0e-186
WP_003433579.1|1726638_1727256_+	YmfQ family protein	NA	A0A0A8WII4	Clostridium_phage	98.0	8.8e-114
WP_009888853.1|1727267_1728293_+|tail	phage tail protein	tail	A3QSB7	Clostridium_virus	87.8	9.1e-140
WP_009893144.1|1728309_1729836_+	hypothetical protein	NA	B6SBV0	Clostridium_virus	60.8	1.3e-89
WP_009889429.1|1729850_1730144_+	hypothetical protein	NA	E2ELK3	Clostridium_phage	77.9	2.2e-38
WP_009889431.1|1730143_1730326_+	hypothetical protein	NA	A3QSC3	Clostridium_virus	95.0	5.5e-24
WP_009889434.1|1730359_1730926_+	hypothetical protein	NA	A0A0A8WFF2	Clostridium_phage	77.8	3.6e-37
WP_009889435.1|1730956_1731247_+	hypothetical protein	NA	A0A0A8WIF5	Clostridium_phage	95.8	6.9e-45
WP_009889440.1|1731250_1731508_+|holin	holin	holin	A3QSC5	Clostridium_virus	100.0	1.1e-41
WP_003429958.1|1731768_1732632_+	Abi family protein	NA	A3QSC6	Clostridium_virus	99.7	8.4e-163
WP_009889444.1|1732710_1733523_+	N-acetylmuramoyl-L-alanine amidase	NA	X5JAJ5	Clostridium_phage	97.4	9.7e-153
WP_009893147.1|1733616_1736016_+	cell wall-binding repeat-containing protein	NA	NA	NA	NA	NA
WP_003433687.1|1736056_1736242_-	hypothetical protein	NA	A0A0A8WHQ4	Clostridium_phage	62.1	7.6e-13
>prophage 6
NZ_CP011846	Clostridioides difficile strain DSM 27638 chromosome, complete genome	4229698	3053442	3062395	4229698		Catovirus(50.0%)	8	NA	NA
WP_009891028.1|3053442_3055356_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.8	1.1e-26
WP_003431768.1|3055439_3056531_-	glycosyltransferase	NA	A0A1V0SL50	Klosneuvirus	26.2	1.8e-16
WP_021419400.1|3056536_3057832_-	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	43.6	3.7e-90
WP_003426498.1|3057857_3058610_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	40.5	4.6e-16
WP_004454111.1|3058657_3059566_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003426502.1|3059587_3060337_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	38.8	1.2e-16
WP_004454110.1|3060365_3061556_-	glycerophosphotransferase	NA	NA	NA	NA	NA
WP_009891033.1|3061555_3062395_-	glycosyltransferase family 2 protein	NA	A0A2P1ELT8	Moumouvirus	26.3	5.3e-05
>prophage 7
NZ_CP011846	Clostridioides difficile strain DSM 27638 chromosome, complete genome	4229698	3794147	3835403	4229698	portal,capsid,protease,head,tail,holin,terminase	Erysipelothrix_phage(72.97%)	46	NA	NA
WP_087298928.1|3794147_3794465_+	DNA ligase	NA	A0A2K5B2A7	Erysipelothrix_phage	42.1	2.2e-12
WP_087298926.1|3794454_3795582_+	DUF2800 domain-containing protein	NA	Q6DMW2	Streptococcus_phage	58.3	2.9e-123
WP_087298924.1|3795583_3796159_+	DUF2815 family protein	NA	E4ZFK3	Streptococcus_phage	73.0	3.8e-71
WP_087298922.1|3796179_3796365_+	hypothetical protein	NA	NA	NA	NA	NA
WP_113649364.1|3796430_3798371_+	DNA polymerase	NA	A0A2K5B2B0	Erysipelothrix_phage	70.6	3.0e-277
WP_113649365.1|3798384_3798816_+	hypothetical protein	NA	A0A2K5B270	Erysipelothrix_phage	56.7	1.6e-42
WP_113649366.1|3799606_3801148_+	virulence protein E	NA	A0A2K5B271	Erysipelothrix_phage	51.3	4.4e-154
WP_113649395.1|3801404_3801938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_113649367.1|3801934_3802216_+	VRR-NUC domain-containing protein	NA	M1PFY8	Streptococcus_phage	65.6	2.2e-27
WP_113649368.1|3802196_3803561_+	DEAD/DEAH box helicase	NA	A0A1X9I6B0	Streptococcus_phage	58.7	2.3e-151
WP_113649369.1|3803616_3803844_+	hypothetical protein	NA	A0A2K5B274	Erysipelothrix_phage	54.5	1.8e-11
WP_113649370.1|3803840_3804251_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA	NA
WP_113649396.1|3804383_3804731_+	HNH endonuclease	NA	A0A2K5B276	Erysipelothrix_phage	59.5	1.4e-36
WP_087371621.1|3804871_3805420_+|terminase	terminase	terminase	A0A2K5B277	Erysipelothrix_phage	60.6	4.5e-53
WP_087375923.1|3805424_3806210_+	S-adenosylmethionine synthetase	NA	NA	NA	NA	NA
WP_113649371.1|3806206_3807445_+	site-specific DNA-methyltransferase	NA	A0A2I4R670	Erysipelothrix_phage	61.2	2.1e-143
WP_113649372.1|3807431_3809369_+	DNA (cytosine-5-)-methyltransferase	NA	A0A1P8DJM9	Virus_Rctr41k	35.6	1.1e-29
WP_113649373.1|3809467_3810187_+	virulence protein	NA	A0A2K5B280	Erysipelothrix_phage	46.8	2.5e-51
WP_113649374.1|3810170_3810407_+	DUF4314 domain-containing protein	NA	A0A2K5B281	Erysipelothrix_phage	60.3	5.5e-16
WP_113649375.1|3810396_3810714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_113649376.1|3810843_3811794_+	alpha-L-fucosidase	NA	A0A1B1IUD7	uncultured_Mediterranean_phage	39.7	1.9e-51
WP_113649377.1|3811891_3812368_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_113649378.1|3812357_3812558_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087375914.1|3812682_3812970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_113649379.1|3813078_3814686_+|terminase	terminase large subunit	terminase	A0A2K5B285	Erysipelothrix_phage	82.9	8.0e-268
WP_113649380.1|3814703_3816062_+|portal	phage portal protein	portal	A0A2K5B287	Erysipelothrix_phage	74.8	6.5e-186
WP_087375911.1|3815958_3816699_+|protease	Clp protease ClpP	protease	Q6DMU1	Streptococcus_phage	60.2	2.5e-67
WP_087375910.1|3816712_3817915_+|capsid	phage major capsid protein	capsid	A0A2I4R671	Erysipelothrix_phage	74.7	3.0e-166
WP_113649381.1|3817934_3818246_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2K5B290	Erysipelothrix_phage	81.2	6.5e-41
WP_113649382.1|3818248_3818581_+|head	phage head closure protein	head	A0A2K5B291	Erysipelothrix_phage	62.3	1.3e-31
WP_113649383.1|3818573_3819005_+	HK97 gp10 family phage protein	NA	A0A2K5B292	Erysipelothrix_phage	61.5	3.3e-43
WP_113649384.1|3819001_3819337_+	hypothetical protein	NA	A0A2K5B293	Erysipelothrix_phage	46.8	3.2e-25
WP_087375905.1|3819439_3820051_+|tail	phage tail protein	tail	A0A2K5B294	Erysipelothrix_phage	71.4	1.4e-74
WP_009269250.1|3820064_3820445_+	hypothetical protein	NA	A0A2K5B295	Erysipelothrix_phage	65.3	2.6e-39
WP_157959119.1|3820471_3820633_+	hypothetical protein	NA	A0A2K5B296	Erysipelothrix_phage	76.2	1.0e-13
WP_113649385.1|3820651_3823312_+|tail	phage tail protein	tail	A0A2K5B297	Erysipelothrix_phage	68.9	1.5e-24
WP_113649386.1|3823327_3824095_+|tail	phage tail family protein	tail	A0A2I4R672	Erysipelothrix_phage	52.9	7.9e-72
WP_113649387.1|3824098_3826621_+	hypothetical protein	NA	A0A2K5B298	Erysipelothrix_phage	65.5	0.0e+00
WP_113649388.1|3826639_3826834_+	hypothetical protein	NA	A0A2K5B299	Erysipelothrix_phage	58.5	9.1e-17
WP_113649389.1|3826844_3827423_+	hypothetical protein	NA	A0A2K5B2A0	Erysipelothrix_phage	50.5	5.8e-51
WP_113649398.1|3827467_3829894_+	glycosyl hydrolase	NA	A0A2K5B2A1	Erysipelothrix_phage	67.6	0.0e+00
WP_113649397.1|3829974_3830397_+|holin	phage holin family protein	holin	A0A2K5B2A2	Erysipelothrix_phage	70.6	1.6e-50
WP_113649390.1|3830399_3831371_+	N-acetylmuramoyl-L-alanine amidase	NA	H7BV89	unidentified_phage	54.1	1.1e-86
WP_113649391.1|3831491_3831914_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA	NA
WP_113649399.1|3832126_3833893_+	recombinase family protein	NA	Q6DMS6	Streptococcus_phage	43.9	3.3e-73
WP_113649392.1|3833831_3835403_+	recombinase family protein	NA	Q6DMS5	Streptococcus_phage	52.7	2.6e-154
>prophage 8
NZ_CP011846	Clostridioides difficile strain DSM 27638 chromosome, complete genome	4229698	3955194	3969026	4229698	portal,transposase	Clostridioides_phage(83.33%)	17	NA	NA
WP_009888243.1|3955194_3956334_+	Fic family protein	NA	A0A1V0E025	Clostridioides_phage	91.8	4.9e-195
WP_009888245.1|3956666_3957242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888246.1|3957252_3957441_+	hypothetical protein	NA	A0A1V0E014	Clostridioides_phage	96.8	5.3e-22
WP_009888247.1|3957635_3958193_+	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	97.8	4.1e-94
WP_012816430.1|3958492_3959236_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	92.3	4.3e-131
WP_021396478.1|3959431_3959650_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	94.4	6.8e-37
WP_012816431.1|3959689_3960232_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	95.0	8.3e-92
WP_009888248.1|3960326_3961532_+|portal	phage portal protein	portal	A0A1V0DZW8	Clostridioides_phage	95.0	2.0e-210
WP_009888251.1|3962060_3962504_-	hypothetical protein	NA	A0A1V0DZZ2	Clostridioides_phage	82.6	4.3e-62
WP_009888252.1|3962721_3963165_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888253.1|3963186_3963504_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012816432.1|3963693_3964356_-	DUF4367 domain-containing protein	NA	A0A1V0DZZ4	Clostridioides_phage	76.2	4.4e-87
WP_009888255.1|3964387_3964930_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1V0DZZ1	Clostridioides_phage	96.7	3.8e-89
WP_009888256.1|3965169_3965352_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888257.1|3965379_3965991_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012816433.1|3966467_3967682_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	7.9e-50
WP_003437815.1|3967868_3969026_-	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	28.5	8.4e-17
>prophage 9
NZ_CP011846	Clostridioides difficile strain DSM 27638 chromosome, complete genome	4229698	4140751	4156174	4229698		Streptococcus_phage(92.31%)	20	NA	NA
WP_009892195.1|4140751_4141075_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	73.5	1.7e-39
WP_009892197.1|4141089_4141473_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	66.1	6.3e-38
WP_009892199.1|4141568_4141982_+	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
WP_009892201.1|4142088_4142547_+	glyoxalase	NA	NA	NA	NA	NA
WP_009892206.1|4142571_4143114_+	DUF3795 domain-containing protein	NA	NA	NA	NA	NA
WP_009892207.1|4143170_4143677_+	YcxB family protein	NA	NA	NA	NA	NA
WP_012816450.1|4143786_4145181_+	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	66.8	1.3e-178
WP_009892210.1|4145460_4146582_+	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	62.7	1.3e-134
WP_009892216.1|4146588_4146723_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_006354966.1|4146723_4146945_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	86.3	1.2e-28
WP_009892220.1|4147264_4147903_+	chloramphenicol acetyltransferase CAT	NA	G3CFL0	Escherichia_phage	35.3	7.6e-36
WP_009892222.1|4147979_4148168_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009892224.1|4148188_4148686_+	conjugal transfer protein	NA	A0A1S5SF25	Streptococcus_phage	41.2	1.3e-27
WP_009892226.1|4148701_4149205_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	47.6	4.4e-39
WP_153300386.1|4149167_4149308_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009892227.1|4149317_4149707_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	73.8	8.1e-49
WP_009892228.1|4149693_4152126_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.0	0.0e+00
WP_009892229.1|4152125_4154261_+	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	58.6	1.3e-177
WP_009892230.1|4154257_4155265_+	C40 family peptidase	NA	A0A1S5SEZ8	Streptococcus_phage	67.3	6.4e-130
WP_009892232.1|4155280_4156174_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	53.0	1.6e-79
