The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011848	Clostridioides difficile strain DSM 27640 chromosome, complete genome	4229629	285644	301830	4229629		Synechococcus_phage(23.08%)	14	NA	NA
WP_009888043.1|285644_286157_-	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	87.1	2.3e-83
WP_003425290.1|286606_287083_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
WP_003420966.1|287088_287787_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
WP_003425288.1|287798_289166_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
WP_003425286.1|289159_290236_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	1.7e-64
WP_003436064.1|290229_290823_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	4.3e-25
WP_009892582.1|290815_292348_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
WP_009888045.1|292358_293609_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_009888046.1|293633_297440_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	24.1	3.0e-31
WP_009888047.1|297645_298518_+	dTDP-4-dehydrorhamnose reductase	NA	H9NCE8	Sphingomonas_phage	30.0	3.8e-14
WP_009888048.1|298626_299508_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	61.9	8.2e-97
WP_009888049.1|299544_300102_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.0	1.3e-47
WP_009888050.1|300139_301123_+	dTDP-glucose 4,6-dehydratase	NA	A0A291LAD7	Escherichia_phage	47.9	9.2e-81
WP_009888051.1|301161_301830_+	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	47.7	4.1e-24
>prophage 2
NZ_CP011848	Clostridioides difficile strain DSM 27640 chromosome, complete genome	4229629	588703	659418	4229629	protease,tRNA,coat,transposase	Streptococcus_phage(33.33%)	55	NA	NA
WP_003425122.1|588703_589420_+|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003436985.1|589498_590809_+	methylase	NA	NA	NA	NA	NA
WP_003425127.1|590908_591445_+	signal peptidase I	NA	NA	NA	NA	NA
WP_003425129.1|591610_592147_+	signal peptidase I	NA	NA	NA	NA	NA
WP_009888346.1|592156_592912_+	TIM barrel protein	NA	NA	NA	NA	NA
WP_009888347.1|592985_594653_+	nucleoside kinase	NA	NA	NA	NA	NA
WP_003417962.1|595217_596147_+	glutaminase A	NA	NA	NA	NA	NA
WP_003417965.1|596244_596808_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_009888348.1|597295_598132_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.5	2.1e-30
WP_009888349.1|598383_599379_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_009888350.1|599635_600040_-	RusA family crossover junction endodeoxyribonuclease	NA	NA	NA	NA	NA
WP_009888351.1|601039_601954_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_009888352.1|602059_604297_+	ATP-binding protein	NA	A0A2H4UU76	Bodo_saltans_virus	32.7	9.9e-06
WP_025984766.1|604928_605546_+	endonuclease III	NA	NA	NA	NA	NA
WP_003429657.1|605739_606210_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_009888355.1|606245_607094_+	DegV family protein	NA	NA	NA	NA	NA
WP_009892666.1|607466_608471_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_009888358.1|608595_609708_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003439005.1|610130_610892_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003417993.1|610894_611713_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003439009.1|611892_612495_+	DUF445 family protein	NA	NA	NA	NA	NA
WP_009888359.1|613357_615277_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	39.9	1.3e-144
WP_100882489.1|616706_616856_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012816012.1|617212_618331_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0H3UZC2	Geobacillus_virus	53.2	2.2e-110
WP_009888362.1|619328_620366_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_009888364.1|620358_621045_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888365.1|621056_621377_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_009888366.1|621737_623078_+	sensor histidine kinase	NA	X5JAC0	Clostridium_phage	38.8	2.4e-79
WP_009888368.1|623755_624325_-	hydrolase	NA	NA	NA	NA	NA
WP_009888369.1|624485_625736_-	MFS transporter	NA	NA	NA	NA	NA
WP_074014400.1|626027_626615_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009888371.1|626936_628397_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_003429639.1|628770_629376_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009888372.1|629378_631946_+	pyruvate, phosphate dikinase	NA	A0A1V0SGR7	Hokovirus	39.6	4.1e-48
WP_003437599.1|631938_632103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888376.1|633211_633487_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429630.1|633506_633794_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009892676.1|635348_636458_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0H3UZC2	Geobacillus_virus	53.8	3.1e-109
WP_009888381.1|636522_638646_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888382.1|638660_643871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888383.1|644095_646195_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	28.8	2.2e-68
WP_009892678.1|646237_646633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003438914.1|647693_647882_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888386.1|648066_648507_-	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
WP_009888387.1|648842_650156_+	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	41.0	1.6e-93
WP_009888388.1|650173_650710_+	ParB-like nuclease domain-containing protein	NA	A0A220GKT8	Streptococcus_phage	70.3	4.2e-64
WP_009888389.1|651228_651450_+|coat	spore coat associated protein CotJA	coat	NA	NA	NA	NA
WP_009888390.1|651449_651713_+|coat	spore coat protein CotJB	coat	NA	NA	NA	NA
WP_003418062.1|651774_652347_+	manganese catalase family protein	NA	NA	NA	NA	NA
WP_009888391.1|653164_653698_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	50.0	7.0e-35
WP_009888392.1|653922_654102_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_012816016.1|654708_654957_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888395.1|655804_656218_+	DUF3795 domain-containing protein	NA	NA	NA	NA	NA
WP_009888396.1|656292_656802_+	GrpB family protein	NA	NA	NA	NA	NA
WP_009888399.1|658308_659418_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0H3UZC2	Geobacillus_virus	54.3	6.6e-112
>prophage 3
NZ_CP011848	Clostridioides difficile strain DSM 27640 chromosome, complete genome	4229629	1399494	1462393	4229629	integrase,protease,tRNA,tail,plate,portal	Clostridium_phage(46.15%)	61	1404652:1404668	1465822:1465838
WP_003428224.1|1399494_1400229_+|protease	Clp protease	protease	NA	NA	NA	NA
WP_009889104.1|1400351_1402763_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.4	3.3e-92
WP_009889105.1|1402765_1403824_+|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
WP_009892976.1|1403817_1405152_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
1404652:1404668	attL	AAAGAAGATATATTAAA	NA	NA	NA	NA
WP_009889106.1|1405138_1405681_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003428218.1|1405968_1407015_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	63.5	2.7e-123
WP_003428216.1|1407190_1408732_+	ribonuclease Y	NA	NA	NA	NA	NA
WP_003438344.1|1409366_1411148_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_009889108.1|1411229_1411760_-	signal peptidase I	NA	NA	NA	NA	NA
WP_009889109.1|1411799_1412624_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_009889110.1|1412880_1413789_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_009889111.1|1413932_1415378_+	adenylosuccinate lyase	NA	NA	NA	NA	NA
WP_003419561.1|1415688_1416141_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009889112.1|1416553_1418131_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_009892977.1|1418289_1419042_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011861180.1|1419180_1420521_+	6-phospho-alpha-glucosidase	NA	NA	NA	NA	NA
WP_003438357.1|1420632_1421829_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_009889113.1|1422213_1423164_+	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_003438367.1|1423324_1424077_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	45.6	1.9e-57
WP_009889114.1|1424168_1424945_-	exonuclease domain-containing protein	NA	NA	NA	NA	NA
WP_003428202.1|1425259_1427158_+	glutamine synthetase	NA	NA	NA	NA	NA
WP_003428201.1|1427285_1428407_-	galactosyldiacylglycerol synthase	NA	NA	NA	NA	NA
WP_009889116.1|1428605_1428938_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012816112.1|1428924_1429983_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_009889118.1|1429975_1431046_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_003428196.1|1431147_1431684_+	lipoprotein	NA	NA	NA	NA	NA
WP_009889121.1|1431800_1432508_+	lantibiotic protection ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	48.0	3.6e-55
WP_009889122.1|1432509_1433226_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA	NA
WP_009889124.1|1433227_1433986_+	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA	NA
WP_009889126.1|1434129_1435518_+	two-component system sensor histidine kinase	NA	NA	NA	NA	NA
WP_003428191.1|1435593_1436415_-	pyridoxamine kinase	NA	NA	NA	NA	NA
WP_009892989.1|1436665_1437820_+	amidase domain-containing protein	NA	NA	NA	NA	NA
WP_003419624.1|1438002_1438203_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
WP_009889129.1|1438623_1439052_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_009889131.1|1439194_1439950_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_009889132.1|1440070_1440487_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003428186.1|1440650_1441157_-	hypothetical protein	NA	A0A0A8WEK1	Clostridium_phage	67.1	4.0e-56
WP_003428185.1|1441238_1441559_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
WP_003419641.1|1441727_1441925_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_009889133.1|1442029_1442470_+	hypothetical protein	NA	A0A090EUN5	Clostridium_phage	51.4	4.6e-32
WP_009889135.1|1442718_1443162_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	36.7	7.6e-19
WP_009889137.1|1443166_1444231_+|portal	phage portal protein	portal	A0A1V0DZX4	Clostridioides_phage	52.8	2.6e-97
WP_003419646.1|1444244_1444673_+|tail	phage tail tube protein	tail	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
WP_009889139.1|1444786_1445233_+|portal	phage portal protein	portal	A0A0A7RTP2	Clostridium_phage	36.4	1.1e-12
WP_003419648.1|1445259_1445427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009889141.1|1445426_1447880_+	hypothetical protein	NA	A0A1V0DZX3	Clostridioides_phage	61.0	6.1e-17
WP_009889143.1|1447879_1448302_+	hypothetical protein	NA	A0A090DBR9	Clostridium_phage	70.4	2.2e-52
WP_009889145.1|1448583_1450113_+	cell wall XkdQ hydrolase	NA	A0A1V0DZX6	Clostridioides_phage	81.1	1.0e-243
WP_003438447.1|1450128_1450455_+	DUF2577 domain-containing protein	NA	J9QE86	Clostridium_phage	94.4	1.0e-52
WP_003428161.1|1450454_1450883_+	DUF2634 domain-containing protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	5.8e-64
WP_009889148.1|1450875_1451928_+|plate	baseplate J/gp47 family protein	plate	A0A0A8WFP3	Clostridium_phage	71.3	9.3e-140
WP_009889149.1|1451924_1452623_+	DUF2313 domain-containing protein	NA	A0A090D815	Clostridium_phage	56.9	3.3e-48
WP_009889153.1|1452623_1453610_+|tail	phage tail protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	45.8	3.4e-59
WP_009892995.1|1453631_1458809_+	chromosome condensation regulator	NA	A0A0A8WEY5	Clostridium_phage	28.3	8.2e-88
WP_009889155.1|1458825_1459179_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	4.2e-12
WP_003419670.1|1459441_1459702_+	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
WP_003419674.1|1459926_1460382_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003438466.1|1460609_1461029_-	helix-turn-helix transcriptional regulator	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
WP_003428146.1|1461327_1461537_+	helix-turn-helix transcriptional regulator	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
WP_003428145.1|1461556_1461778_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009889162.1|1461994_1462393_-	helix-turn-helix domain-containing protein	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
1465822:1465838	attR	TTTAATATATCTTCTTT	NA	NA	NA	NA
>prophage 4
NZ_CP011848	Clostridioides difficile strain DSM 27640 chromosome, complete genome	4229629	1545085	1553630	4229629		Pandoravirus(33.33%)	10	NA	NA
WP_009889249.1|1545085_1545670_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	52.6	4.2e-57
WP_074014342.1|1545662_1547021_+	aminodeoxychorismate synthase component I	NA	S4VNU7	Pandoravirus	41.2	3.0e-37
WP_003438634.1|1547010_1547754_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
WP_009889253.1|1547787_1548489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429416.1|1548514_1549087_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
WP_012816129.1|1549140_1549944_+	dihydropteroate synthase	NA	S4W084	Pandoravirus	28.6	2.4e-23
WP_009889257.1|1549954_1550320_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_009889259.1|1550312_1550819_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_009893063.1|1550799_1551585_+	3-deoxy-7-phosphoheptulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.0e-13
WP_009893065.1|1551839_1553630_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.8	5.6e-52
>prophage 5
NZ_CP011848	Clostridioides difficile strain DSM 27640 chromosome, complete genome	4229629	1681044	1736175	4229629	integrase,terminase,holin,tail,plate,portal	Clostridium_phage(78.57%)	68	1675047:1675062	1684267:1684282
1675047:1675062	attL	ATATAAAAGAGCAGAT	NA	NA	NA	NA
WP_003429803.1|1681044_1682175_-|integrase	site-specific integrase	integrase	A0A0A8WIE1	Clostridium_phage	99.7	2.9e-216
WP_009888800.1|1682253_1682961_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888801.1|1682973_1683843_-	protein kinase	NA	NA	NA	NA	NA
WP_003429804.1|1684462_1684969_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A8WEK1	Clostridium_phage	100.0	1.5e-87
1684267:1684282	attR	ATATAAAAGAGCAGAT	NA	NA	NA	NA
WP_009893126.1|1685044_1685593_-	helix-turn-helix domain-containing protein	NA	A0A0A8WJ60	Clostridium_phage	98.4	2.2e-92
WP_009888806.1|1685604_1685946_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	100.0	7.6e-59
WP_009893129.1|1686122_1686326_+	helix-turn-helix domain-containing protein	NA	A0A0A8WHR3	Clostridium_phage	100.0	3.7e-29
WP_009888810.1|1686373_1687183_+	phage antirepressor	NA	A0A0A8WIE3	Clostridium_phage	97.4	1.0e-146
WP_009888812.1|1687229_1687439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003433505.1|1687448_1687823_-	hypothetical protein	NA	A0A1L5C299	Pseudoalteromonas_phage	37.1	2.2e-11
WP_009888813.1|1687898_1688096_+	helix-turn-helix transcriptional regulator	NA	A0A0A8WE47	Clostridium_phage	92.3	2.9e-26
WP_009888815.1|1688126_1688519_+	helix-turn-helix domain-containing protein	NA	A0A0A8WHS2	Clostridium_phage	93.0	9.6e-58
WP_003429817.1|1688499_1688649_+	hypothetical protein	NA	A0A0A8WIF8	Clostridium_phage	89.4	4.2e-14
WP_003433513.1|1688719_1689157_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888818.1|1689168_1690335_+	DUF2800 domain-containing protein	NA	S5MUB5	Brevibacillus_phage	55.9	1.5e-117
WP_009888819.1|1690349_1690685_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429822.1|1690737_1691310_+	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA	NA
WP_003433516.1|1691332_1691905_+	DUF2815 family protein	NA	S5MC21	Brevibacillus_phage	66.7	8.5e-63
WP_009888821.1|1691904_1693863_+	DNA polymerase	NA	A0A0A7RTL3	Clostridium_phage	69.1	7.8e-265
WP_009888822.1|1693874_1696292_+	virulence-associated protein E	NA	A0A0A7RTG3	Clostridium_phage	67.7	0.0e+00
WP_003433522.1|1696573_1696900_+	VRR-NUC domain-containing protein	NA	A0A2K5B272	Erysipelothrix_phage	55.4	8.7e-20
WP_009888823.1|1696848_1698219_+	DEAD/DEAH box helicase	NA	A0A1S7FYY5	Listeria_phage	60.0	8.4e-157
WP_009888825.1|1698372_1698852_+	hypothetical protein	NA	I2E8Y5	Clostridium_phage	51.0	4.4e-36
WP_009888827.1|1699878_1700853_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429834.1|1700873_1701383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888829.1|1701452_1702145_+	helix-turn-helix domain-containing protein	NA	A0A0A8WFS6	Clostridium_phage	97.0	7.0e-120
WP_009888830.1|1702134_1703376_+|terminase	PBSX family phage terminase large subunit	terminase	X5JAB3	Clostridium_phage	98.3	1.1e-243
WP_009888831.1|1703381_1704824_+|portal	phage portal protein	portal	A0A0A8WIH2	Clostridium_phage	97.7	3.0e-274
WP_009893134.1|1704813_1706349_+	hypothetical protein	NA	X5JAI9	Clostridium_phage	71.9	2.5e-194
WP_009888832.1|1706350_1706599_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888833.1|1706666_1707230_+	scaffold protein	NA	A0A0A8WFU8	Clostridium_phage	93.6	6.0e-85
WP_009888834.1|1707241_1708132_+	hypothetical protein	NA	X5J9Z5	Clostridium_phage	99.3	1.4e-165
WP_009888835.1|1708150_1708384_+	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	93.5	4.6e-31
WP_009888836.1|1708393_1708795_+	hypothetical protein	NA	X5JAJ0	Clostridium_phage	97.0	8.1e-68
WP_003433540.1|1708788_1709136_+	hypothetical protein	NA	X5JAV9	Clostridium_phage	99.1	1.1e-57
WP_009893135.1|1709135_1709426_+	HK97 gp10 family phage protein	NA	A0A0A8WFV8	Clostridium_phage	96.7	4.1e-45
WP_009888838.1|1709535_1710342_+	hypothetical protein	NA	F8UBL7	Clostridium_phage	48.0	2.4e-47
WP_009888839.1|1710690_1711128_+	hypothetical protein	NA	A0A0A8WJT3	Clostridium_phage	95.2	3.3e-75
WP_009888840.1|1711120_1711297_+	hypothetical protein	NA	X5J9Z6	Clostridium_phage	93.1	1.1e-21
WP_009893136.1|1711297_1712608_+	hypothetical protein	NA	X5JAJ1	Clostridium_phage	92.7	8.1e-234
WP_009888842.1|1712624_1713095_+|tail	phage tail tube protein	tail	A0A0A8WJ62	Clostridium_phage	81.3	1.3e-69
WP_009888843.1|1713153_1713981_+	hypothetical protein	NA	A0A2R4P8H7	Staphylococcus_phage	48.3	1.8e-45
WP_003429853.1|1714052_1714493_+|portal	phage portal protein	portal	X5JAB6	Clostridium_phage	63.7	8.6e-47
WP_011861033.1|1714492_1714687_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429855.1|1714833_1714995_+	hypothetical protein	NA	A0A0A8WE04	Clostridium_phage	84.3	1.2e-14
WP_003429858.1|1716331_1716520_+	hypothetical protein	NA	X5JAJ2	Clostridium_phage	96.8	2.2e-23
WP_009888845.1|1716638_1717505_+	hypothetical protein	NA	X5JAW1	Clostridium_phage	80.1	3.2e-130
WP_009888846.1|1717557_1717692_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888847.1|1718369_1718897_+	DUF4352 domain-containing protein	NA	A0A0A8WJ63	Clostridium_phage	97.1	8.7e-62
WP_009888848.1|1719034_1719802_+	DUF4428 domain-containing protein	NA	X5JB37	Clostridium_phage	44.4	6.3e-45
WP_009893138.1|1719867_1722240_+	tape measure protein	NA	X5JAB7	Clostridium_phage	41.5	8.8e-146
WP_009888849.1|1722256_1722946_+	LysM peptidoglycan-binding domain-containing protein	NA	X5J9Z8	Clostridium_phage	94.8	2.0e-119
WP_009893140.1|1722938_1724831_+	cell wall hydrolase	NA	A3QSB3	Clostridium_virus	94.8	0.0e+00
WP_009893142.1|1724844_1725105_+	DUF2577 domain-containing protein	NA	A0A0A8WJ65	Clostridium_phage	86.0	1.4e-33
WP_009888851.1|1725109_1725529_+	DUF2634 domain-containing protein	NA	A0A0A8WJV8	Clostridium_phage	95.7	1.3e-71
WP_009888852.1|1725529_1726579_+|plate	baseplate J/gp47 family protein	plate	A0A0A8WFK0	Clostridium_phage	94.8	1.0e-186
WP_003433579.1|1726571_1727189_+	YmfQ family protein	NA	A0A0A8WII4	Clostridium_phage	98.0	8.8e-114
WP_009888853.1|1727200_1728226_+|tail	phage tail protein	tail	A3QSB7	Clostridium_virus	87.8	9.1e-140
WP_009893144.1|1728242_1729769_+	hypothetical protein	NA	B6SBV0	Clostridium_virus	60.8	1.3e-89
WP_009889429.1|1729783_1730077_+	hypothetical protein	NA	E2ELK3	Clostridium_phage	77.9	2.2e-38
WP_009889431.1|1730076_1730259_+	hypothetical protein	NA	A3QSC3	Clostridium_virus	95.0	5.5e-24
WP_009889434.1|1730292_1730859_+	hypothetical protein	NA	A0A0A8WFF2	Clostridium_phage	77.8	3.6e-37
WP_009889435.1|1730889_1731180_+	hypothetical protein	NA	A0A0A8WIF5	Clostridium_phage	95.8	6.9e-45
WP_009889440.1|1731183_1731441_+|holin	holin	holin	A3QSC5	Clostridium_virus	100.0	1.1e-41
WP_003429958.1|1731701_1732565_+	Abi family protein	NA	A3QSC6	Clostridium_virus	99.7	8.4e-163
WP_009889444.1|1732643_1733456_+	N-acetylmuramoyl-L-alanine amidase	NA	X5JAJ5	Clostridium_phage	97.4	9.7e-153
WP_009893147.1|1733549_1735949_+	cell wall-binding repeat-containing protein	NA	NA	NA	NA	NA
WP_003433687.1|1735989_1736175_-	hypothetical protein	NA	A0A0A8WHQ4	Clostridium_phage	62.1	7.6e-13
>prophage 6
NZ_CP011848	Clostridioides difficile strain DSM 27640 chromosome, complete genome	4229629	3053373	3062326	4229629		Catovirus(50.0%)	8	NA	NA
WP_009891028.1|3053373_3055287_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.8	1.1e-26
WP_003431768.1|3055370_3056462_-	glycosyltransferase	NA	A0A1V0SL50	Klosneuvirus	26.2	1.8e-16
WP_021419400.1|3056467_3057763_-	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	43.6	3.7e-90
WP_003426498.1|3057788_3058541_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	40.5	4.6e-16
WP_004454111.1|3058588_3059497_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003426502.1|3059518_3060268_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	38.8	1.2e-16
WP_004454110.1|3060296_3061487_-	glycerophosphotransferase	NA	NA	NA	NA	NA
WP_009891033.1|3061486_3062326_-	glycosyltransferase family 2 protein	NA	A0A2P1ELT8	Moumouvirus	26.3	5.3e-05
>prophage 7
NZ_CP011848	Clostridioides difficile strain DSM 27640 chromosome, complete genome	4229629	3794078	3835334	4229629	head,terminase,protease,capsid,holin,tail,portal	Erysipelothrix_phage(72.97%)	46	NA	NA
WP_087298928.1|3794078_3794396_+	DNA ligase	NA	A0A2K5B2A7	Erysipelothrix_phage	42.1	2.2e-12
WP_087298926.1|3794385_3795513_+	DUF2800 domain-containing protein	NA	Q6DMW2	Streptococcus_phage	58.3	2.9e-123
WP_087298924.1|3795514_3796090_+	DUF2815 family protein	NA	E4ZFK3	Streptococcus_phage	73.0	3.8e-71
WP_087298922.1|3796110_3796296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_113649364.1|3796361_3798302_+	DNA polymerase	NA	A0A2K5B2B0	Erysipelothrix_phage	70.6	3.0e-277
WP_113649365.1|3798315_3798747_+	hypothetical protein	NA	A0A2K5B270	Erysipelothrix_phage	56.7	1.6e-42
WP_113649366.1|3799537_3801079_+	virulence protein E	NA	A0A2K5B271	Erysipelothrix_phage	51.3	4.4e-154
WP_113649395.1|3801335_3801869_+	hypothetical protein	NA	NA	NA	NA	NA
WP_113649367.1|3801865_3802147_+	VRR-NUC domain-containing protein	NA	M1PFY8	Streptococcus_phage	65.6	2.2e-27
WP_113649368.1|3802127_3803492_+	DEAD/DEAH box helicase	NA	A0A1X9I6B0	Streptococcus_phage	58.7	2.3e-151
WP_113649369.1|3803547_3803775_+	hypothetical protein	NA	A0A2K5B274	Erysipelothrix_phage	54.5	1.8e-11
WP_113649370.1|3803771_3804182_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA	NA
WP_113649396.1|3804314_3804662_+	HNH endonuclease	NA	A0A2K5B276	Erysipelothrix_phage	59.5	1.4e-36
WP_087371621.1|3804802_3805351_+|terminase	terminase	terminase	A0A2K5B277	Erysipelothrix_phage	60.6	4.5e-53
WP_087375923.1|3805355_3806141_+	S-adenosylmethionine synthetase	NA	NA	NA	NA	NA
WP_113649371.1|3806137_3807376_+	site-specific DNA-methyltransferase	NA	A0A2I4R670	Erysipelothrix_phage	61.2	2.1e-143
WP_113649372.1|3807362_3809300_+	DNA (cytosine-5-)-methyltransferase	NA	A0A1P8DJM9	Virus_Rctr41k	35.6	1.1e-29
WP_113649373.1|3809398_3810118_+	virulence protein	NA	A0A2K5B280	Erysipelothrix_phage	46.8	2.5e-51
WP_113649374.1|3810101_3810338_+	DUF4314 domain-containing protein	NA	A0A2K5B281	Erysipelothrix_phage	60.3	5.5e-16
WP_113649375.1|3810327_3810645_+	hypothetical protein	NA	NA	NA	NA	NA
WP_113649376.1|3810774_3811725_+	alpha-L-fucosidase	NA	A0A1B1IUD7	uncultured_Mediterranean_phage	39.7	1.9e-51
WP_113649377.1|3811822_3812299_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_113649378.1|3812288_3812489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087375914.1|3812613_3812901_+	hypothetical protein	NA	NA	NA	NA	NA
WP_113649379.1|3813009_3814617_+|terminase	terminase large subunit	terminase	A0A2K5B285	Erysipelothrix_phage	82.9	8.0e-268
WP_113649380.1|3814634_3815993_+|portal	phage portal protein	portal	A0A2K5B287	Erysipelothrix_phage	74.8	6.5e-186
WP_087375911.1|3815889_3816630_+|protease	Clp protease ClpP	protease	Q6DMU1	Streptococcus_phage	60.2	2.5e-67
WP_087375910.1|3816643_3817846_+|capsid	phage major capsid protein	capsid	A0A2I4R671	Erysipelothrix_phage	74.7	3.0e-166
WP_113649381.1|3817865_3818177_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2K5B290	Erysipelothrix_phage	81.2	6.5e-41
WP_113649382.1|3818179_3818512_+|head	phage head closure protein	head	A0A2K5B291	Erysipelothrix_phage	62.3	1.3e-31
WP_113649383.1|3818504_3818936_+	HK97 gp10 family phage protein	NA	A0A2K5B292	Erysipelothrix_phage	61.5	3.3e-43
WP_113649384.1|3818932_3819268_+	hypothetical protein	NA	A0A2K5B293	Erysipelothrix_phage	46.8	3.2e-25
WP_087375905.1|3819370_3819982_+|tail	phage tail protein	tail	A0A2K5B294	Erysipelothrix_phage	71.4	1.4e-74
WP_009269250.1|3819995_3820376_+	hypothetical protein	NA	A0A2K5B295	Erysipelothrix_phage	65.3	2.6e-39
WP_157959119.1|3820402_3820564_+	hypothetical protein	NA	A0A2K5B296	Erysipelothrix_phage	76.2	1.0e-13
WP_113649385.1|3820582_3823243_+|tail	phage tail protein	tail	A0A2K5B297	Erysipelothrix_phage	68.9	1.5e-24
WP_113649386.1|3823258_3824026_+|tail	phage tail family protein	tail	A0A2I4R672	Erysipelothrix_phage	52.9	7.9e-72
WP_113649387.1|3824029_3826552_+	hypothetical protein	NA	A0A2K5B298	Erysipelothrix_phage	65.5	0.0e+00
WP_113649388.1|3826570_3826765_+	hypothetical protein	NA	A0A2K5B299	Erysipelothrix_phage	58.5	9.1e-17
WP_113649389.1|3826775_3827354_+	hypothetical protein	NA	A0A2K5B2A0	Erysipelothrix_phage	50.5	5.8e-51
WP_113649398.1|3827398_3829825_+	glycosyl hydrolase	NA	A0A2K5B2A1	Erysipelothrix_phage	67.6	0.0e+00
WP_113649397.1|3829905_3830328_+|holin	phage holin family protein	holin	A0A2K5B2A2	Erysipelothrix_phage	70.6	1.6e-50
WP_113649390.1|3830330_3831302_+	N-acetylmuramoyl-L-alanine amidase	NA	H7BV89	unidentified_phage	54.1	1.1e-86
WP_113649391.1|3831422_3831845_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA	NA
WP_113649399.1|3832057_3833824_+	recombinase family protein	NA	Q6DMS6	Streptococcus_phage	43.9	3.3e-73
WP_113649392.1|3833762_3835334_+	recombinase family protein	NA	Q6DMS5	Streptococcus_phage	52.7	2.6e-154
>prophage 8
NZ_CP011848	Clostridioides difficile strain DSM 27640 chromosome, complete genome	4229629	3955125	3968957	4229629	portal,transposase	Clostridioides_phage(81.82%)	16	NA	NA
WP_009888243.1|3955125_3956265_+	Fic family protein	NA	A0A1V0E025	Clostridioides_phage	91.8	4.9e-195
WP_009888245.1|3956597_3957173_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888246.1|3957183_3957372_+	hypothetical protein	NA	A0A1V0E014	Clostridioides_phage	96.8	5.3e-22
WP_009888247.1|3957566_3958124_+	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	97.8	4.1e-94
WP_012816430.1|3958423_3959167_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	92.3	4.3e-131
WP_012816431.1|3959620_3960163_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	95.0	8.3e-92
WP_009888248.1|3960257_3961463_+|portal	phage portal protein	portal	A0A1V0DZW8	Clostridioides_phage	95.0	2.0e-210
WP_009888251.1|3961991_3962435_-	hypothetical protein	NA	A0A1V0DZZ2	Clostridioides_phage	82.6	4.3e-62
WP_009888252.1|3962652_3963096_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888253.1|3963117_3963435_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012816432.1|3963624_3964287_-	DUF4367 domain-containing protein	NA	A0A1V0DZZ4	Clostridioides_phage	76.2	4.4e-87
WP_009888255.1|3964318_3964861_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1V0DZZ1	Clostridioides_phage	96.7	3.8e-89
WP_009888256.1|3965100_3965283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888257.1|3965310_3965922_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012816433.1|3966398_3967613_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	7.9e-50
WP_003437815.1|3967799_3968957_-	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	28.5	8.4e-17
>prophage 9
NZ_CP011848	Clostridioides difficile strain DSM 27640 chromosome, complete genome	4229629	4140682	4156105	4229629		Streptococcus_phage(92.31%)	20	NA	NA
WP_009892195.1|4140682_4141006_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	73.5	1.7e-39
WP_009892197.1|4141020_4141404_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	66.1	6.3e-38
WP_009892199.1|4141499_4141913_+	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
WP_009892201.1|4142019_4142478_+	glyoxalase	NA	NA	NA	NA	NA
WP_009892206.1|4142502_4143045_+	DUF3795 domain-containing protein	NA	NA	NA	NA	NA
WP_009892207.1|4143101_4143608_+	YcxB family protein	NA	NA	NA	NA	NA
WP_012816450.1|4143717_4145112_+	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	66.8	1.3e-178
WP_009892210.1|4145391_4146513_+	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	62.7	1.3e-134
WP_009892216.1|4146519_4146654_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_006354966.1|4146654_4146876_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	86.3	1.2e-28
WP_009892220.1|4147195_4147834_+	chloramphenicol acetyltransferase CAT	NA	G3CFL0	Escherichia_phage	35.3	7.6e-36
WP_009892222.1|4147910_4148099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009892224.1|4148119_4148617_+	conjugal transfer protein	NA	A0A1S5SF25	Streptococcus_phage	41.2	1.3e-27
WP_009892226.1|4148632_4149136_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	47.6	4.4e-39
WP_153300386.1|4149098_4149239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009892227.1|4149248_4149638_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	73.8	8.1e-49
WP_009892228.1|4149624_4152057_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.0	0.0e+00
WP_009892229.1|4152056_4154192_+	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	58.6	1.3e-177
WP_009892230.1|4154188_4155196_+	C40 family peptidase	NA	A0A1S5SEZ8	Streptococcus_phage	67.3	6.4e-130
WP_009892232.1|4155211_4156105_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	53.0	1.6e-79
