The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP030246	Staphylococcus epidermidis strain CSF41498 chromosome, complete genome	2481008	1018345	1064801	2481008	tRNA,integrase	Staphylococcus_phage(84.38%)	41	1008474:1008490	1049476:1049492
1008474:1008490	attL	TAAAGCAACCCCTATAT	NA	NA	NA	NA
WP_002456422.1|1018345_1018840_-|integrase	site-specific integrase	integrase	B7T092	Staphylococcus_virus	76.1	3.8e-67
WP_002456423.1|1018998_1019211_+	hypothetical protein	NA	A0A2H4JCA1	uncultured_Caudovirales_phage	72.9	7.3e-20
WP_002468830.1|1019590_1020325_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002456425.1|1020406_1020562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002456426.1|1020851_1021139_-	hypothetical protein	NA	A0A2H4JGN1	uncultured_Caudovirales_phage	50.0	5.5e-18
WP_002456427.1|1021300_1021966_-	hypothetical protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	41.8	7.0e-08
WP_002456428.1|1022060_1022207_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002456429.1|1023216_1024641_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	63.9	6.6e-173
WP_001829851.1|1024630_1025632_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	50.2	6.9e-92
WP_001829824.1|1025628_1025880_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	81.9	1.9e-35
WP_080009580.1|1025938_1026415_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	58.7	1.5e-44
WP_002456431.1|1026401_1027187_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	71.3	2.0e-99
WP_001832979.1|1027417_1029010_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	83.2	2.7e-268
WP_001829830.1|1029379_1030579_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	85.4	4.1e-192
WP_002468818.1|1030681_1031590_+	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	80.6	1.8e-102
WP_002456435.1|1031769_1032606_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	68.6	6.1e-110
WP_002469577.1|1032890_1033046_+	hypothetical protein	NA	A0A146ICT8	Staphylococcus_phage	79.6	5.2e-15
WP_001830729.1|1033372_1033726_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	32.5	8.5e-05
WP_001830726.1|1033722_1034088_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	57.0	4.1e-34
WP_002493962.1|1034126_1034435_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001830731.1|1034711_1035425_+	transaldolase	NA	M1PR54	Cyanophage	37.4	4.1e-22
WP_001830728.1|1035564_1036008_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	42.9	3.1e-20
WP_001830734.1|1035994_1036438_-	competence protein ComK	NA	NA	NA	NA	NA
WP_001830724.1|1036443_1036923_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	42.3	2.7e-25
WP_010959195.1|1036978_1037098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001830737.1|1037130_1037346_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001830727.1|1037723_1038575_+	autolysin	NA	A0A1J0MFB0	Staphylococcus_phage	35.6	1.0e-32
WP_080003818.1|1038913_1040407_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	65.6	2.5e-13
WP_002440254.1|1040843_1041887_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	66.5	3.4e-134
WP_001830723.1|1041893_1042526_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	77.1	5.5e-87
WP_002440250.1|1042538_1043720_+	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	75.3	1.8e-176
WP_001830736.1|1043732_1044194_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	84.2	1.2e-59
WP_002468815.1|1044241_1045243_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	70.0	1.5e-131
WP_001830886.1|1045485_1046313_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001830809.1|1046802_1047204_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001830894.1|1047440_1048004_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	66.5	1.9e-67
WP_001830802.1|1048000_1048954_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	84.7	3.3e-67
WP_001830884.1|1049060_1050275_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	83.7	4.6e-183
1049476:1049492	attR	ATATAGGGGTTGCTTTA	NA	NA	NA	NA
WP_145961195.1|1050566_1052981_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	87.3	0.0e+00
WP_001830891.1|1053006_1053318_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	71.8	4.1e-35
WP_049392215.1|1053722_1064801_+	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	25.6	5.4e-28
>prophage 2
NZ_CP030246	Staphylococcus epidermidis strain CSF41498 chromosome, complete genome	2481008	1773025	1781495	2481008		Synechococcus_phage(33.33%)	9	NA	NA
WP_001831672.1|1773025_1773592_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.0	6.1e-29
WP_038399308.1|1773591_1774623_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.1	6.3e-64
WP_002495589.1|1774615_1776100_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.2	7.2e-45
WP_002467589.1|1776078_1778268_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.4	1.1e-139
WP_001831727.1|1778260_1778932_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_001831728.1|1778933_1779194_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_001831723.1|1779193_1779898_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	H8ZMN3	Synechococcus_phage	42.5	1.6e-47
WP_001831674.1|1779898_1781026_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_001831735.1|1781012_1781495_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	43.3	5.2e-21
>prophage 3
NZ_CP030246	Staphylococcus epidermidis strain CSF41498 chromosome, complete genome	2481008	1813137	1850173	2481008	transposase,holin,capsid,terminase,head,tail,portal,protease,integrase	Bacillus_phage(34.48%)	44	1811162:1811178	1858404:1858420
1811162:1811178	attL	GTTTTTTGTTTATAACT	NA	NA	NA	NA
WP_002501737.1|1813137_1814058_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6JNM6	Staphylococcus_phage	62.9	4.1e-67
WP_114064929.1|1814140_1815282_-|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	97.1	2.0e-71
WP_002446772.1|1815385_1815772_-|holin	phage holin family protein	holin	D7RWK5	Brochothrix_phage	33.9	2.1e-12
WP_002501736.1|1815773_1816055_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002501735.1|1816091_1816502_-	hypothetical protein	NA	A0A1I9KKA6	Lactobacillus_phage	31.3	2.8e-07
WP_002501734.1|1816522_1819978_-	hypothetical protein	NA	M1PRQ3	Streptococcus_phage	23.6	7.6e-21
WP_049392193.1|1819974_1820745_-|tail	tail protein	tail	NA	NA	NA	NA
WP_002501731.1|1820747_1824929_-|tail	phage tail tape measure protein	tail	A0A2P0ZLF1	Lactobacillus_phage	42.6	7.4e-63
WP_032606956.1|1824992_1825205_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002501729.1|1825258_1825603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484613.1|1825626_1826331_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002501727.1|1826336_1826774_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002501726.1|1826773_1827112_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002501725.1|1827111_1827441_-|head	phage head closure protein	head	NA	NA	NA	NA
WP_002484579.1|1827412_1827721_-	hypothetical protein	NA	A0A2H4JF26	uncultured_Caudovirales_phage	39.1	1.5e-10
WP_002501724.1|1827747_1828905_-|capsid	phage major capsid protein	capsid	A0A0U4JIF4	Bacillus_phage	52.3	2.6e-98
WP_002501723.1|1828929_1829676_-|protease	Clp protease ClpP	protease	A0A2H4J8Y7	uncultured_Caudovirales_phage	46.9	8.3e-42
WP_002501722.1|1829675_1830812_-|portal	phage portal protein	portal	A0A0U4IIQ9	Bacillus_phage	44.1	1.8e-88
WP_002501721.1|1830827_1832462_-|terminase	terminase large subunit	terminase	A0A0U4B089	Bacillus_phage	56.6	1.4e-182
WP_002501720.1|1832445_1832784_-	hypothetical protein	NA	D2XR14	Bacillus_phage	38.2	1.0e-10
WP_002501719.1|1833103_1833394_-	HNH endonuclease	NA	D2XR61	Bacillus_phage	42.2	2.5e-18
WP_002501717.1|1834492_1834984_-	hypothetical protein	NA	S5MAA9	Brevibacillus_phage	28.0	2.6e-07
WP_002501716.1|1835307_1837182_-	DNA primase	NA	A0A1B1P7L5	Bacillus_phage	58.3	3.3e-212
WP_002501715.1|1837211_1837406_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002501714.1|1837484_1837730_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002491630.1|1837801_1838017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002501713.1|1838034_1838337_-	hypothetical protein	NA	A0A1W6JP65	Staphylococcus_phage	77.0	3.8e-38
WP_002501712.1|1838402_1839098_+	hypothetical protein	NA	U3PE05	Staphylococcus_phage	54.7	8.8e-70
WP_002501711.1|1839105_1839495_-	hypothetical protein	NA	U3PG42	Staphylococcus_phage	52.9	2.0e-07
WP_002486494.1|1839502_1839667_-	DUF3310 domain-containing protein	NA	A0A2I6PF10	Staphylococcus_phage	58.8	1.1e-07
WP_002501710.1|1839750_1841469_-	hypothetical protein	NA	A0A1B1P7M5	Bacillus_phage	63.6	5.9e-208
WP_002501709.1|1841518_1842001_-	DUF669 domain-containing protein	NA	A0A2H4J1S8	uncultured_Caudovirales_phage	38.4	5.2e-21
WP_002501708.1|1842052_1842259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002501707.1|1842277_1844089_-	AAA family ATPase	NA	A0A1B1P7N0	Bacillus_phage	57.4	5.0e-165
WP_002484599.1|1844088_1844385_-	hypothetical protein	NA	A0A1B1P7M6	Bacillus_phage	58.2	3.6e-25
WP_002501706.1|1844377_1844695_-	hypothetical protein	NA	A0A2P0ZLA7	Lactobacillus_phage	45.5	1.1e-22
WP_002501705.1|1844697_1845939_-	DEAD/DEAH box helicase family protein	NA	A0A1B1P7L4	Bacillus_phage	58.2	3.7e-135
WP_002491611.1|1846086_1846281_-	DUF1270 family protein	NA	NA	NA	NA	NA
WP_002501703.1|1846765_1847074_-	DUF771 domain-containing protein	NA	Q4ZC28	Staphylococcus_virus	37.4	7.7e-10
WP_002501702.1|1847127_1847319_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	65.1	9.5e-19
WP_002446811.1|1847479_1847815_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	58.9	1.4e-28
WP_002501701.1|1847970_1848345_+	hypothetical protein	NA	NA	NA	NA	NA
WP_049392317.1|1848357_1849032_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002491600.1|1849108_1850173_+|integrase	site-specific integrase	integrase	A0A2H4JGN1	uncultured_Caudovirales_phage	69.8	1.2e-137
1858404:1858420	attR	GTTTTTTGTTTATAACT	NA	NA	NA	NA
>prophage 4
NZ_CP030246	Staphylococcus epidermidis strain CSF41498 chromosome, complete genome	2481008	1872513	1877090	2481008	transposase	Synechococcus_phage(33.33%)	9	NA	NA
WP_079993594.1|1872513_1874526_-	ATP-binding cassette domain-containing protein	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	36.1	7.6e-106
WP_002469315.1|1874890_1875268_-	glucose-6-phosphate 1-dehydrogenase	NA	NA	NA	NA	NA
WP_080012080.1|1875276_1875588_-	glucose-6-phosphate dehydrogenase	NA	E3SJC5	Synechococcus_phage	37.6	1.6e-07
WP_077431490.1|1875597_1875747_-	hypothetical protein	NA	M4SJ15	Cyanophage	51.0	3.5e-08
WP_001829271.1|1875753_1875948_-	hypothetical protein	NA	E3SKF6	Synechococcus_phage	48.4	9.1e-09
WP_080003812.1|1875944_1876259_-	glucose-6-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_001829258.1|1876350_1876554_+|transposase	transposase	transposase	A0A0N7GFG6	Staphylococcus_phage	80.0	3.3e-09
WP_107362610.1|1876620_1876716_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_001829295.1|1876826_1877090_-	DUF4176 domain-containing protein	NA	A0A1X9I6T6	Streptococcus_phage	41.4	1.5e-09
>prophage 5
NZ_CP030246	Staphylococcus epidermidis strain CSF41498 chromosome, complete genome	2481008	2003728	2018137	2481008	terminase,integrase	Staphylococcus_phage(53.33%)	17	2010861:2010876	2014556:2014571
WP_070534009.1|2003728_2004619_-	hypothetical protein	NA	A0A1L2JY39	Aeribacillus_phage	33.7	5.4e-40
WP_070534004.1|2004775_2005258_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	66.0	4.2e-55
WP_032603291.1|2005317_2006004_-	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	31.8	1.1e-27
WP_032603293.1|2006023_2006557_-	hypothetical protein	NA	A0A2H4JD56	uncultured_Caudovirales_phage	31.2	1.1e-11
WP_002438931.1|2006569_2006908_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	71.6	2.1e-37
WP_002438930.1|2007243_2007885_-	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	78.4	2.1e-94
WP_002438929.1|2007881_2008244_-	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	34.7	1.9e-12
WP_002438928.1|2008236_2008590_-	hypothetical protein	NA	A0A2H4JBD4	uncultured_Caudovirales_phage	67.9	6.0e-43
WP_002438927.1|2008832_2010200_-	DNA primase	NA	A0A2H4JBE3	uncultured_Caudovirales_phage	91.2	1.1e-246
WP_002438926.1|2010211_2011081_-	hypothetical protein	NA	A0A2H4JEH3	uncultured_Caudovirales_phage	83.7	8.5e-147
2010861:2010876	attL	TATTTTTTATATTCAT	NA	NA	NA	NA
WP_002438924.1|2011500_2011710_-	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	55.6	2.9e-13
WP_032603302.1|2011885_2012104_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_032603303.1|2012257_2012995_+	helix-turn-helix transcriptional regulator	NA	A0A1W6JQE6	Staphylococcus_phage	28.8	1.1e-06
WP_032604364.1|2013009_2014116_+|integrase	site-specific integrase	integrase	A0A1B2AQ00	Phage_Wrath	43.9	2.4e-77
WP_002438920.1|2014128_2014689_+	hypothetical protein	NA	NA	NA	NA	NA
2014556:2014571	attR	ATGAATATAAAAAATA	NA	NA	NA	NA
WP_001829588.1|2015263_2015734_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	88.5	1.4e-71
WP_002438919.1|2015758_2018137_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.6	6.2e-91
>prophage 6
NZ_CP030246	Staphylococcus epidermidis strain CSF41498 chromosome, complete genome	2481008	2068231	2078665	2481008		uncultured_Caudovirales_phage(66.67%)	10	NA	NA
WP_001829596.1|2068231_2069011_-	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	33.6	5.1e-18
WP_002438903.1|2069007_2069967_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	100.0	4.1e-17
WP_002438902.1|2069950_2070925_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	99.7	5.9e-165
WP_002456931.1|2070940_2071204_-	hypothetical protein	NA	A0A2H4IYB4	uncultured_Caudovirales_phage	100.0	5.5e-17
WP_001829597.1|2071178_2072147_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	100.0	3.9e-185
WP_001829582.1|2072265_2074371_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	100.0	0.0e+00
WP_001829589.1|2074333_2074732_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	100.0	2.0e-71
WP_001829684.1|2075486_2076362_+	DMT family transporter	NA	NA	NA	NA	NA
WP_001832596.1|2076375_2076876_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.1	1.1e-50
WP_002438897.1|2077159_2078665_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.0	5.5e-61
>prophage 7
NZ_CP030246	Staphylococcus epidermidis strain CSF41498 chromosome, complete genome	2481008	2098528	2109064	2481008		Staphylococcus_phage(22.22%)	15	NA	NA
WP_001830323.1|2098528_2099680_-	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	39.6	7.5e-26
WP_001830349.1|2099669_2100257_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001830328.1|2100553_2101225_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	55.7	4.1e-64
WP_001830341.1|2101229_2101649_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_001830330.1|2101649_2102363_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	44.8	1.6e-55
WP_001830331.1|2102465_2103065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001830315.1|2103414_2103570_+	hypothetical protein	NA	A0A146ICT8	Staphylococcus_phage	75.5	9.8e-14
WP_010959136.1|2103661_2103760_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001830329.1|2104165_2104603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001830332.1|2104653_2105127_+	DoxX family protein	NA	NA	NA	NA	NA
WP_001830352.1|2105101_2105791_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	3.4e-34
WP_002438881.1|2105880_2106846_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	30.6	1.8e-17
WP_001830351.1|2106915_2108022_-	glycosyltransferase family 2 protein	NA	A8CG95	Salmonella_phage	43.2	6.3e-62
WP_011082622.1|2107990_2108083_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001830355.1|2108224_2109064_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	43.0	1.2e-60
