assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003330905.1_ASM333090v1	NZ_CP030326	Staphylococcus aureus strain AR_474 chromosome, complete genome	1	462910-463011	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|70aa|up_8|NZ_CP030326.1_454469_454679_-,NA|128aa|up_6|NZ_CP030326.1_455503_455887_-,NA|33aa|up_0|NZ_CP030326.1_462134_462233_+,NA|221aa|down_1|NZ_CP030326.1_464101_464764_-,NA|179aa|down_7|NZ_CP030326.1_470855_471392_-	NA|84aa|up_9|NZ_CP030326.1_454179_454431_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP030326.1_454469_454679_-	NA	NA|194aa|up_7|NZ_CP030326.1_454856_455438_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP030326.1_455503_455887_-	NA	NA|209aa|up_5|NZ_CP030326.1_456156_456783_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP030326.1_457226_458750_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP030326.1_458765_459335_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP030326.1_459826_460582_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP030326.1_460661_462050_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_0|NZ_CP030326.1_462134_462233_+	NA	NA|319aa|down_0|NZ_CP030326.1_463027_463984_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NZ_CP030326.1_464101_464764_-	NA	NA|136aa|down_2|NZ_CP030326.1_464906_465314_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP030326.1_465826_466405_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP030326.1_466404_467673_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP030326.1_467710_469177_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP030326.1_469201_470743_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP030326.1_470855_471392_-	NA	NA|235aa|down_8|NZ_CP030326.1_471783_472488_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP030326.1_472886_473159_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_003330905.1_ASM333090v1	NZ_CP030326	Staphylococcus aureus strain AR_474 chromosome, complete genome	2	818452-818534	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|69aa|up_9|NZ_CP030326.1_805065_805272_+,NA|34aa|down_1|NZ_CP030326.1_820189_820291_+,NA|52aa|down_8|NZ_CP030326.1_828137_828293_+	NA|69aa|up_9|NZ_CP030326.1_805065_805272_+	NA	NA|237aa|up_8|NZ_CP030326.1_805359_806070_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_CP030326.1_806053_807058_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_CP030326.1_807531_809472_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_CP030326.1_809741_811625_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP030326.1_811636_813418_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP030326.1_813639_814617_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP030326.1_814609_816124_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP030326.1_816363_817422_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP030326.1_817760_818303_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP030326.1_819181_820099_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_CP030326.1_820189_820291_+	NA	NA|502aa|down_2|NZ_CP030326.1_820368_821874_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_CP030326.1_822214_822715_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_CP030326.1_822734_823601_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_CP030326.1_824401_824800_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_CP030326.1_824762_826868_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_CP030326.1_826985_827957_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NZ_CP030326.1_828137_828293_+	NA	NA|324aa|down_9|NZ_CP030326.1_828331_829303_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_003330905.1_ASM333090v1	NZ_CP030326	Staphylococcus aureus strain AR_474 chromosome, complete genome	3	859399-859477	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	1	859423-859453	NZ_CP030326.1_1777089-1777119	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_7|NZ_CP030326.1_850275_850380_+,NA|36aa|up_5|NZ_CP030326.1_851812_851920_+,NA	NA|191aa|up_9|NZ_CP030326.1_846716_847289_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP030326.1_847702_850234_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP030326.1_850275_850380_+	NA	NA|370aa|up_6|NZ_CP030326.1_850548_851659_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP030326.1_851812_851920_+	NA	NA|280aa|up_4|NZ_CP030326.1_852067_852907_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP030326.1_853080_853731_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP030326.1_853727_853964_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP030326.1_854232_856218_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP030326.1_856225_859072_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP030326.1_859735_860668_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP030326.1_860673_861513_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP030326.1_861520_862006_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP030326.1_862013_863453_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP030326.1_863519_864455_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP030326.1_865340_866252_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP030326.1_866248_867244_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP030326.1_867354_868299_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP030326.1_868862_869450_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP030326.1_869692_870595_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_003330905.1_ASM333090v1	NZ_CP030326	Staphylococcus aureus strain AR_474 chromosome, complete genome	4	864854-865123	1	CRT	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TTCTCTGTGTTGGGGCCCACACCCCAACTNGCATTG	36	4	40	864890-864911|864890-864911|864890-864911|864890-864911|864890-864911|864890-864911|864890-864911|864890-864911|864890-864911|864890-864911|864890-864911|864890-864911|864890-864911|864948-864970|864948-864970|864948-864970|864948-864970|864948-864970|864948-864970|864948-864970|865007-865028|865007-865028|865007-865028|865007-865028|865007-865028|865007-865028|865007-865028|865007-865028|865007-865028|865007-865028|865007-865028|865007-865028|865007-865028|865065-865087|865065-865087|865065-865087|865065-865087|865065-865087|865065-865087|865065-865087	NZ_CP030326.1_181713-181692|NZ_CP030326.1_304789-304768|NZ_CP030326.1_691408-691387|NZ_CP030326.1_817493-817514|NZ_CP030326.1_908154-908175|NZ_CP030326.1_1472571-1472550|NZ_CP030326.1_1561104-1561125|NZ_CP030326.1_1742682-1742703|NZ_CP030326.1_1757237-1757216|NZ_CP030326.1_2074965-2074986|NZ_CP030326.1_1022475-1022496|NZ_CP030326.1_1776944-1776965|NZ_CP030326.1_1777177-1777198|NZ_CP030326.1_818465-818443|NZ_CP030326.1_818743-818721|NZ_CP030326.1_1472688-1472666|NZ_CP030326.1_2075023-2075045|NZ_CP030326.1_2414635-2414657|NZ_CP030326.1_1560987-1561009|NZ_CP030326.1_2175928-2175950|NZ_CP030326.1_181713-181692|NZ_CP030326.1_304789-304768|NZ_CP030326.1_691408-691387|NZ_CP030326.1_817493-817514|NZ_CP030326.1_908154-908175|NZ_CP030326.1_1472571-1472550|NZ_CP030326.1_1561104-1561125|NZ_CP030326.1_1742682-1742703|NZ_CP030326.1_1757237-1757216|NZ_CP030326.1_2074965-2074986|NZ_CP030326.1_1022475-1022496|NZ_CP030326.1_1776944-1776965|NZ_CP030326.1_1777177-1777198|NZ_CP030326.1_818465-818443|NZ_CP030326.1_818743-818721|NZ_CP030326.1_1472688-1472666|NZ_CP030326.1_2075023-2075045|NZ_CP030326.1_2414635-2414657|NZ_CP030326.1_1560987-1561009|NZ_CP030326.1_2175928-2175950	NA	4	4	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|280aa|up_9|NZ_CP030326.1_852067_852907_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP030326.1_853080_853731_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP030326.1_853727_853964_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP030326.1_854232_856218_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP030326.1_856225_859072_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP030326.1_859735_860668_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP030326.1_860673_861513_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP030326.1_861520_862006_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP030326.1_862013_863453_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP030326.1_863519_864455_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP030326.1_865340_866252_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP030326.1_866248_867244_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP030326.1_867354_868299_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP030326.1_868862_869450_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP030326.1_869692_870595_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP030326.1_871297_871927_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP030326.1_872683_873697_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP030326.1_873749_874760_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP030326.1_874898_876089_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP030326.1_876210_876972_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_003330905.1_ASM333090v1	NZ_CP030326	Staphylococcus aureus strain AR_474 chromosome, complete genome	5	908081-908162	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	908105-908138	NZ_CP030326.1_1472679-1472646	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|38aa|up_1|NZ_CP030326.1_906983_907097_+,NA	NA|206aa|up_9|NZ_CP030326.1_901837_902455_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP030326.1_902609_903104_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP030326.1_903502_903925_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP030326.1_904072_904789_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP030326.1_904871_905411_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP030326.1_905561_905882_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP030326.1_906025_906382_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP030326.1_906539_906920_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP030326.1_906983_907097_+	NA	NA|293aa|up_0|NZ_CP030326.1_907098_907977_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP030326.1_908773_909160_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP030326.1_909152_909449_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP030326.1_909698_910724_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP030326.1_910716_911412_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP030326.1_911429_912251_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP030326.1_912604_912799_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP030326.1_913032_913884_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP030326.1_914211_914973_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP030326.1_915070_916378_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NZ_CP030326.1_916483_917734_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_003330905.1_ASM333090v1	NZ_CP030326	Staphylococcus aureus strain AR_474 chromosome, complete genome	6	1742606-1742690	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	1	1742632-1742664	NZ_CP030326.1_1472679-1472647	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|228aa|up_9|NZ_CP030326.1_1731815_1732499_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NZ_CP030326.1_1732742_1732919_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NZ_CP030326.1_1733211_1734558_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NZ_CP030326.1_1734564_1735317_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NZ_CP030326.1_1735318_1736257_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NZ_CP030326.1_1736260_1737400_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NZ_CP030326.1_1737535_1739368_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NZ_CP030326.1_1739436_1740063_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NZ_CP030326.1_1740094_1741072_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NZ_CP030326.1_1741172_1742297_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NZ_CP030326.1_1742862_1744686_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NZ_CP030326.1_1745031_1745283_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NZ_CP030326.1_1745327_1746302_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|716aa|down_3|NZ_CP030326.1_1746358_1748506_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NZ_CP030326.1_1748564_1749026_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NZ_CP030326.1_1749117_1749804_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NZ_CP030326.1_1749843_1750560_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NZ_CP030326.1_1750562_1750916_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NZ_CP030326.1_1750916_1751501_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NZ_CP030326.1_1751490_1752060_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_003330905.1_ASM333090v1	NZ_CP030326	Staphylococcus aureus strain AR_474 chromosome, complete genome	7	2175847-2175928	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	GGCCCCCACCCCAACTTACATTGT	24	1	5	2175871-2175904|2175871-2175904|2175871-2175904|2175871-2175904|2175871-2175904	NZ_CP030326.1_859398-859431|NZ_CP030326.1_1260936-1260903|NZ_CP030326.1_1869350-1869317|NZ_CP030326.1_1477020-1477053|NZ_CP030326.1_2865285-2865318	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|61aa|up_5|NZ_CP030326.1_2168552_2168735_+,NA	NA|81aa|up_9|NZ_CP030326.1_2166091_2166334_-	pfam05339, DUF739, Protein of unknown function (DUF739)	NA|239aa|up_8|NZ_CP030326.1_2166497_2167214_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|285aa|up_7|NZ_CP030326.1_2167225_2168080_+	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|62aa|up_6|NZ_CP030326.1_2168296_2168482_+	pfam00815, Histidinol_dh, Histidinol dehydrogenase	NA|61aa|up_5|NZ_CP030326.1_2168552_2168735_+	NA	NA|238aa|up_4|NZ_CP030326.1_2168813_2169527_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|346aa|up_3|NZ_CP030326.1_2169717_2170755_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|339aa|up_2|NZ_CP030326.1_2171873_2172890_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|NZ_CP030326.1_2172911_2173967_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|NZ_CP030326.1_2174402_2175626_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NZ_CP030326.1_2176069_2177377_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|539aa|down_1|NZ_CP030326.1_2177916_2179533_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_2|NZ_CP030326.1_2179608_2179893_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_3|NZ_CP030326.1_2180067_2180811_+	pfam02517, Abi, CAAX protease self-immunity	NA|420aa|down_4|NZ_CP030326.1_2180835_2182095_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_5|NZ_CP030326.1_2182291_2182918_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_6|NZ_CP030326.1_2183278_2184064_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_7|NZ_CP030326.1_2184663_2184798_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_8|NZ_CP030326.1_2185033_2185597_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|48aa|down_9|NZ_CP030326.1_2185599_2185743_+	smart00794, AgrD, Staphylococcal AgrD protein
GCF_003330905.1_ASM333090v1	NZ_CP030326	Staphylococcus aureus strain AR_474 chromosome, complete genome	8	2305103-2305183	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|77aa|up_5|NZ_CP030326.1_2299977_2300208_-,NA|364aa|up_0|NZ_CP030326.1_2303994_2305086_+,NA|35aa|down_0|NZ_CP030326.1_2305518_2305623_-,NA|53aa|down_1|NZ_CP030326.1_2306302_2306461_+	NA|237aa|up_9|NZ_CP030326.1_2295588_2296299_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP030326.1_2296419_2296863_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP030326.1_2297062_2297476_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP030326.1_2297932_2299306_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP030326.1_2299977_2300208_-	NA	NA|313aa|up_4|NZ_CP030326.1_2300238_2301177_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP030326.1_2301612_2302278_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP030326.1_2302429_2302750_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NZ_CP030326.1_2302751_2303729_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP030326.1_2303994_2305086_+	NA	NA|35aa|down_0|NZ_CP030326.1_2305518_2305623_-	NA	NA|53aa|down_1|NZ_CP030326.1_2306302_2306461_+	NA	NA|286aa|down_2|NZ_CP030326.1_2307118_2307976_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NZ_CP030326.1_2308043_2308826_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NZ_CP030326.1_2309057_2310863_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NZ_CP030326.1_2311543_2313082_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NZ_CP030326.1_2313116_2315249_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NZ_CP030326.1_2315260_2315695_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NZ_CP030326.1_2315694_2316801_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2482aa|down_9|NZ_CP030326.1_2317119_2324565_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_003330905.1_ASM333090v1	NZ_CP030326	Staphylococcus aureus strain AR_474 chromosome, complete genome	9	2317424-2317509	8	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|364aa|up_9|NZ_CP030326.1_2303994_2305086_+,NA|35aa|up_8|NZ_CP030326.1_2305518_2305623_-,NA|53aa|up_7|NZ_CP030326.1_2306302_2306461_+,NA	NA|364aa|up_9|NZ_CP030326.1_2303994_2305086_+	NA	NA|35aa|up_8|NZ_CP030326.1_2305518_2305623_-	NA	NA|53aa|up_7|NZ_CP030326.1_2306302_2306461_+	NA	NA|286aa|up_6|NZ_CP030326.1_2307118_2307976_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP030326.1_2308043_2308826_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP030326.1_2309057_2310863_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP030326.1_2311543_2313082_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP030326.1_2313116_2315249_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP030326.1_2315260_2315695_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP030326.1_2315694_2316801_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP030326.1_2324842_2326198_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP030326.1_2326224_2327157_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP030326.1_2327158_2327968_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP030326.1_2328156_2329065_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP030326.1_2335305_2336370_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP030326.1_2336517_2337960_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP030326.1_2338282_2338756_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP030326.1_2338854_2340198_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP030326.1_2340374_2341058_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP030326.1_2341076_2342264_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_003330905.1_ASM333090v1	NZ_CP030326	Staphylococcus aureus strain AR_474 chromosome, complete genome	10	2425464-2425544	9	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	14	2425489-2425519|2425489-2425519|2425489-2425519|2425489-2425519|2425489-2425519|2425489-2425519|2425489-2425519|2425489-2425519|2425489-2425519|2425489-2425519|2425489-2425519|2425489-2425519|2425489-2425519|2425489-2425519	NZ_CP030326.1_872142-872172|NZ_CP030326.1_872198-872228|NZ_CP030326.1_83049-83079|NZ_CP030326.1_424202-424172|NZ_CP030326.1_691472-691442|NZ_CP030326.1_908417-908447|NZ_CP030326.1_1163976-1164006|NZ_CP030326.1_1266534-1266504|NZ_CP030326.1_1472635-1472605|NZ_CP030326.1_1561040-1561070|NZ_CP030326.1_1561156-1561186|NZ_CP030326.1_1757300-1757270|NZ_CP030326.1_2414688-2414718|NZ_CP030326.1_2591686-2591716	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|55aa|up_9|NZ_CP030326.1_2415997_2416162_+,NA|106aa|up_8|NZ_CP030326.1_2416406_2416724_+,NA|84aa|up_5|NZ_CP030326.1_2421845_2422097_+,NA|62aa|up_0|NZ_CP030326.1_2425236_2425422_+,NA	NA|55aa|up_9|NZ_CP030326.1_2415997_2416162_+	NA	NA|106aa|up_8|NZ_CP030326.1_2416406_2416724_+	NA	NA|1056aa|up_7|NZ_CP030326.1_2416907_2420075_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP030326.1_2420191_2421457_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP030326.1_2421845_2422097_+	NA	NA|255aa|up_4|NZ_CP030326.1_2422088_2422853_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP030326.1_2423014_2423455_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP030326.1_2423447_2424659_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP030326.1_2424760_2425111_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NZ_CP030326.1_2425236_2425422_+	NA	NA|341aa|down_0|NZ_CP030326.1_2425687_2426710_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP030326.1_2426729_2427329_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP030326.1_2427335_2427569_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP030326.1_2427574_2428021_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP030326.1_2428034_2428520_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP030326.1_2428516_2429776_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP030326.1_2429838_2430333_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP030326.1_2430334_2430841_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP030326.1_2430871_2431876_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP030326.1_2432045_2432651_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
