assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003344465.1_ASM334446v1	NZ_CP030111	Escherichia coli strain MCJCHV-1 chromosome, complete genome	1	1647086-1647203	1	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,cas14j,RT,WYL	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas14j,RT,WYL	NA,NA	NA|74aa|up_9|NZ_CP030111.1_1636323_1636545_-	PRK09956, PRK09956, ISNCY family transposase	NA|304aa|up_8|NZ_CP030111.1_1636557_1637469_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP030111.1_1637661_1638852_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP030111.1_1638848_1640108_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP030111.1_1640097_1641726_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP030111.1_1641998_1643357_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP030111.1_1643361_1644438_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP030111.1_1644900_1645551_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP030111.1_1645604_1645859_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP030111.1_1645858_1646989_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP030111.1_1647222_1649508_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP030111.1_1650203_1653956_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP030111.1_1654083_1654806_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP030111.1_1654952_1657580_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP030111.1_1657728_1659417_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP030111.1_1659413_1660037_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP030111.1_1660180_1664575_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP030111.1_1664575_1666225_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP030111.1_1666229_1667006_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP030111.1_1667079_1668264_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_003344465.1_ASM334446v1	NZ_CP030111	Escherichia coli strain MCJCHV-1 chromosome, complete genome	2	2303231-2303354	2	CRISPRCasFinder	no	DEDDh	cas3,csa3,DEDDh,DinG,cas14j,RT,WYL	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas14j,RT,WYL	NA,NA|30aa|down_7|NZ_CP030111.1_2312251_2312341_+	NA|471aa|up_9|NZ_CP030111.1_2292683_2294096_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP030111.1_2294652_2294862_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP030111.1_2295317_2295944_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP030111.1_2295964_2298067_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP030111.1_2298079_2298718_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP030111.1_2298781_2299450_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP030111.1_2299446_2300232_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP030111.1_2300235_2301048_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP030111.1_2301059_2302664_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP030111.1_2302789_2303095_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP030111.1_2303669_2304926_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP030111.1_2304966_2306340_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP030111.1_2306554_2307196_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP030111.1_2307235_2308384_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP030111.1_2308674_2309886_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP030111.1_2309998_2310931_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP030111.1_2310927_2311953_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP030111.1_2312251_2312341_+	NA	NA|390aa|down_8|NZ_CP030111.1_2312506_2313676_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP030111.1_2313821_2314403_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_003344465.1_ASM334446v1	NZ_CP030111	Escherichia coli strain MCJCHV-1 chromosome, complete genome	3	3115756-3115906	3,1	CRISPRCasFinder,PILER-CR	no		cas3,csa3,DEDDh,DinG,cas14j,RT,WYL	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAACTCA	28,31	0	0	NA	NA	I-F:I-F	2,2	2	Orphan	cas3,csa3,DEDDh,DinG,cas14j,RT,WYL	NA,NA	NA|431aa|up_9|NZ_CP030111.1_3100877_3102170_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP030111.1_3102260_3103604_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP030111.1_3103614_3104226_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1330aa|up_6|NZ_CP030111.1_3104384_3108374_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP030111.1_3108508_3109003_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP030111.1_3109546_3110512_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP030111.1_3110634_3112401_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP030111.1_3112401_3114123_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP030111.1_3114164_3114869_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP030111.1_3115153_3115372_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP030111.1_3116115_3118392_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP030111.1_3118422_3118743_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP030111.1_3119065_3119290_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP030111.1_3119362_3121309_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP030111.1_3121305_3122421_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP030111.1_3122571_3123528_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP030111.1_3123524_3125183_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP030111.1_3125608_3126304_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP030111.1_3126624_3127524_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP030111.1_3127667_3129320_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_003344465.1_ASM334446v1	NZ_CP030111	Escherichia coli strain MCJCHV-1 chromosome, complete genome	4	4003288-4003420	2	PILER-CR	no		cas3,csa3,DEDDh,DinG,cas14j,RT,WYL	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,DEDDh,DinG,cas14j,RT,WYL	NA,NA	NA|105aa|up_9|NZ_CP030111.1_3994659_3994974_-	pfam01845, CcdB, CcdB protein	NA|78aa|up_8|NZ_CP030111.1_3994976_3995210_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP030111.1_3995295_3995775_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP030111.1_3995966_3997829_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP030111.1_3997821_3998352_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP030111.1_3998459_3999791_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP030111.1_3999849_4000137_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP030111.1_4000133_4001420_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP030111.1_4001470_4002412_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP030111.1_4002426_4003197_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP030111.1_4003669_4005184_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP030111.1_4005214_4006357_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP030111.1_4006474_4007692_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP030111.1_4007764_4009318_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP030111.1_4009426_4010212_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP030111.1_4010217_4010808_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP030111.1_4010926_4011322_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1073aa|down_7|NZ_CP030111.1_4011582_4014801_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP030111.1_4014818_4015967_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP030111.1_4016422_4017244_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_003344465.1_ASM334446v1	NZ_CP030111	Escherichia coli strain MCJCHV-1 chromosome, complete genome	5	4222480-4222629	4	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,cas14j,RT,WYL	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas14j,RT,WYL	NA,NA|597aa|down_6|NZ_CP030111.1_4229726_4231517_-	NA|340aa|up_9|NZ_CP030111.1_4210670_4211690_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NZ_CP030111.1_4211693_4212257_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NZ_CP030111.1_4212473_4213505_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NZ_CP030111.1_4213528_4214293_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NZ_CP030111.1_4214357_4215677_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NZ_CP030111.1_4215743_4216742_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|NZ_CP030111.1_4216819_4218322_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP030111.1_4218482_4219565_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP030111.1_4219564_4220665_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP030111.1_4220931_4222443_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP030111.1_4222796_4223240_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP030111.1_4223239_4226095_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|NZ_CP030111.1_4226150_4227347_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP030111.1_4227539_4228043_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP030111.1_4228088_4228505_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP030111.1_4228666_4229671_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|597aa|down_6|NZ_CP030111.1_4229726_4231517_-	NA	NA|151aa|down_7|NZ_CP030111.1_4231639_4232092_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_8|NZ_CP030111.1_4232236_4232830_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_9|NZ_CP030111.1_4232900_4233614_+	PRK12742, PRK12742, SDR family oxidoreductase
