The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	0	5364	2046196		Enterobacteria_phage(100.0%)	4	NA	NA
WP_003682736.1|1243_1879_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_014562215.1|2073_3192_+	YibE/F family protein	NA	NA	NA	NA	NA
WP_023465649.1|3188_3962_+	YibE/F family protein	NA	NA	NA	NA	NA
WP_012390919.1|4095_5364_+	uracil transporter	NA	Q9KX94	Enterobacteria_phage	35.5	3.5e-64
>prophage 2
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	14925	15168	2046196		Staphylococcus_phage(100.0%)	1	NA	NA
WP_003682754.1|14925_15168_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	46.5	3.5e-10
>prophage 3
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	21777	26668	2046196	head	Bacillus_phage(33.33%)	6	NA	NA
WP_114806446.1|21777_23070_-	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	51.1	8.6e-103
WP_114806447.1|23066_23540_-	YueI family protein	NA	NA	NA	NA	NA
WP_003685895.1|23629_24040_-	VOC family protein	NA	NA	NA	NA	NA
WP_003685897.1|24076_24823_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003682770.1|25058_25904_-	YitT family protein	NA	M1Q1P6	Streptococcus_phage	28.3	6.4e-14
WP_021350213.1|26347_26668_+|head	head protein	head	Q6SED4	Lactobacillus_prophage	54.2	1.2e-26
>prophage 4
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	29760	34981	2046196	tRNA	Faustovirus(50.0%)	4	NA	NA
WP_003685978.1|29760_30909_+	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	29.5	1.8e-32
WP_003682780.1|30921_32142_+|tRNA	tRNA 4-thiouridine(8) synthase ThiI	tRNA	NA	NA	NA	NA
WP_003682782.1|32530_33826_+	GntP family permease	NA	NA	NA	NA	NA
WP_003682784.1|33838_34981_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	37.1	2.2e-38
>prophage 5
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	40043	42698	2046196	tRNA	Catovirus(100.0%)	1	NA	NA
WP_012390965.1|40043_42698_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	42.4	1.3e-158
>prophage 7
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	87914	91898	2046196		Enterobacteria_phage(50.0%)	4	NA	NA
WP_003682856.1|87914_88937_+	catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	26.9	5.3e-23
WP_114806468.1|88954_89812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003686056.1|89878_90622_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_114806470.1|90872_91898_+	LysM peptidoglycan-binding domain-containing C40 family peptidase	NA	A0A1V0DZX6	Clostridioides_phage	40.4	1.4e-10
>prophage 8
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	100196	100820	2046196		Enterococcus_phage(100.0%)	1	NA	NA
WP_114806472.1|100196_100820_+	metallophosphoesterase family protein	NA	A0A0E3XCF4	Enterococcus_phage	38.0	3.9e-29
>prophage 9
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	116498	122437	2046196	tRNA	Bodo_saltans_virus(50.0%)	5	NA	NA
WP_003682157.1|116498_117389_+	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	27.6	5.0e-09
WP_014562255.1|117445_118474_-	lactonase family protein	NA	NA	NA	NA	NA
WP_114806474.1|118585_119440_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_003686320.1|119611_120118_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_114806476.1|120127_122437_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	49.6	2.2e-85
>prophage 10
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	137019	139812	2046196	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_046026083.1|137019_139812_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	25.0	4.2e-78
>prophage 11
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	146673	156767	2046196		Virus_Rctr197k(25.0%)	10	NA	NA
WP_114806488.1|146673_149220_+	AAA family ATPase	NA	A0A1P8DII4	Virus_Rctr197k	28.9	3.1e-32
WP_114806490.1|149290_150277_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	31.3	3.8e-34
WP_003686362.1|150309_150738_-	Spx/MgsR family RNA polymerase-binding regulatory protein	NA	NA	NA	NA	NA
WP_114806493.1|150961_151936_-	YegS/Rv2252/BmrU family lipid kinase	NA	NA	NA	NA	NA
WP_003682101.1|152195_152411_-	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA	NA
WP_015638740.1|152537_152984_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003686366.1|153089_153659_-	peptide deformylase	NA	A0A2I7S809	Vibrio_phage	41.3	5.8e-11
WP_024500785.1|153792_154074_+	UPF0223 family protein	NA	NA	NA	NA	NA
WP_114806495.1|154077_154842_+	inositol monophosphatase family protein	NA	NA	NA	NA	NA
WP_054173504.1|154919_156767_+	translational GTPase TypA	NA	E4ZFJ7	Streptococcus_phage	34.3	9.6e-23
>prophage 12
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	161267	163985	2046196		Bacillus_phage(50.0%)	2	NA	NA
WP_003682078.1|161267_161747_+	ComE operon protein 2	NA	A7KUY9	Bacillus_phage	56.7	4.1e-34
WP_111523116.1|161747_163985_+	DNA internalization-related competence protein ComEC/Rec2	NA	Q332C0	Clostridium_botulinum_C_phage	31.0	1.6e-27
>prophage 14
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	305308	310416	2046196		Bodo_saltans_virus(50.0%)	6	NA	NA
WP_012391117.1|305308_306034_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	A0A2H4UVM0	Bodo_saltans_virus	28.3	2.5e-06
WP_023465765.1|306023_306809_+	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA	NA
WP_003685131.1|306778_307096_+	phosphoribosyl-AMP cyclohydrolase	NA	NA	NA	NA	NA
WP_003681874.1|307097_307418_+	phosphoribosyl-ATP diphosphatase	NA	NA	NA	NA	NA
WP_003681872.1|307430_308516_+	histidinol-phosphate transaminase	NA	NA	NA	NA	NA
WP_003685127.1|308583_310416_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	26.1	2.5e-23
>prophage 15
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	313463	328316	2046196	transposase	Staphylococcus_phage(44.44%)	13	NA	NA
WP_015638841.1|313463_314537_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	48.2	5.3e-90
WP_114806542.1|314548_315724_+	phosphoglycerate dehydrogenase	NA	M1NSB9	Streptococcus_phage	41.0	5.4e-88
WP_003681857.1|315863_317615_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003685116.1|317652_318108_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_114806544.1|318268_318739_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	44.1	1.5e-25
WP_114806546.1|318731_319925_-	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	48.6	5.0e-97
WP_023465756.1|319911_320520_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	39.1	1.4e-26
WP_003685109.1|320519_321578_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.9	3.4e-41
WP_114806548.1|322532_323567_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	32.2	2.7e-43
WP_023466734.1|323559_324123_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.8	2.2e-31
WP_114806550.1|325072_326245_+	cysteine desulfurase	NA	NA	NA	NA	NA
WP_048340423.1|326382_326580_+	hypothetical protein	NA	NA	NA	NA	NA
WP_114806552.1|327065_328316_+|transposase	transposase	transposase	A0A286QQE5	Streptococcus_phage	37.0	2.6e-56
>prophage 16
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	350182	352837	2046196		Bacillus_phage(50.0%)	2	NA	NA
WP_114806574.1|350182_351580_-	glycoside hydrolase family 32 protein	NA	S6ATV4	Bacillus_phage	25.9	2.6e-20
WP_114806576.1|351853_352837_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	27.4	8.7e-23
>prophage 17
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	357912	370871	2046196	transposase,tRNA	Lactobacillus_phage(20.0%)	13	NA	NA
WP_114806580.1|357912_358368_-|transposase	IS200/IS605 family transposase	transposase	A0A0P0IQC6	Lactobacillus_phage	50.0	2.8e-32
WP_069776035.1|358441_359692_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A286QQE5	Streptococcus_phage	37.3	1.4e-57
WP_031274857.1|360178_360472_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003681791.1|360527_361490_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
WP_012391155.1|361489_362239_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_003681789.1|362298_362640_+	hypothetical protein	NA	NA	NA	NA	NA
WP_114806582.1|362655_364890_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A218M393	Acidovorax_phage	43.5	6.8e-07
WP_114806584.1|364899_365337_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_003681784.1|365643_366132_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_024500869.1|366479_367676_+	PLP-dependent transferase	NA	NA	NA	NA	NA
WP_114806586.1|367650_368778_+	PLP-dependent transferase	NA	A0A2I2L687	Orpheovirus	28.3	3.4e-07
WP_114806588.1|369099_370113_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_003681773.1|370127_370871_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	4.1e-33
>prophage 18
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	374768	377553	2046196		Planktothrix_phage(50.0%)	3	NA	NA
WP_012391164.1|374768_375509_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.1	4.7e-37
WP_003681756.1|375524_376379_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_114806596.1|376809_377553_+	glucose 1-dehydrogenase	NA	A0A0M4JSW6	Mollivirus	29.9	2.4e-17
>prophage 19
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	383412	387044	2046196	tRNA	uncultured_Caudovirales_phage(33.33%)	3	NA	NA
WP_015638895.1|383412_384282_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	35.2	1.7e-17
WP_023467115.1|384343_385372_-	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	29.1	7.7e-14
WP_003681741.1|385748_387044_+|tRNA	histidine--tRNA ligase	tRNA	A0A2K9L0H9	Tupanvirus	26.3	7.7e-27
>prophage 20
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	390294	461000	2046196	integrase,transposase,tRNA	Staphylococcus_phage(19.05%)	68	428827:428842	445425:445440
WP_003684989.1|390294_390744_+	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	34.7	7.2e-17
WP_012391174.1|390891_391875_+	PhoH family protein	NA	L7TP00	Rhizobium_phage	49.3	9.2e-49
WP_003684985.1|391874_392348_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_003681724.1|392325_392724_+	diacylglycerol kinase family protein	NA	NA	NA	NA	NA
WP_111523191.1|392737_393643_+	GTPase Era	NA	NA	NA	NA	NA
WP_114806600.1|393755_394574_+	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_114806602.1|394841_395816_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_114806604.1|395815_397894_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_114806606.1|398045_399941_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	34.7	7.2e-50
WP_114806608.1|399940_401083_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	36.6	1.9e-37
WP_114806610.1|401543_402383_-|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	95.4	8.8e-149
WP_114806612.1|402436_402688_-|transposase	transposase	transposase	Q6J1X3	Lactobacillus_phage	94.0	1.3e-36
WP_003684975.1|402983_403544_+	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
WP_003681705.1|403555_403741_+	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
WP_114806614.1|403768_404311_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_003681701.1|404325_404577_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_003681696.1|404588_404729_+	hypothetical protein	NA	NA	NA	NA	NA
WP_114806462.1|405879_407166_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	31.2	2.3e-47
WP_003683258.1|408605_409517_+	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_003684973.1|409719_410727_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_003684971.1|410739_412098_-	aspartate kinase	NA	NA	NA	NA	NA
WP_003683241.1|412569_413889_+	diaminopimelate decarboxylase	NA	NA	NA	NA	NA
WP_003683238.1|413913_414627_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA	NA	NA	NA	NA
WP_003683235.1|414626_415781_+	N-acetyldiaminopimelate deacetylase	NA	NA	NA	NA	NA
WP_003683233.1|415783_416719_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_114806616.1|416711_417491_+	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_003684963.1|417515_418700_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_003683228.1|418714_419767_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003683224.1|419902_421243_+	ATPase	NA	NA	NA	NA	NA
WP_003684960.1|421235_421910_+	TrkA family potassium uptake protein	NA	NA	NA	NA	NA
WP_003684958.1|421918_422620_+|tRNA	tRNA (adenine(22)-N(1))-methyltransferase TrmK	tRNA	NA	NA	NA	NA
WP_003684956.1|422612_423434_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_015638918.1|423453_424695_+	peptidase T	NA	NA	NA	NA	NA
WP_003683213.1|424766_424994_-	DUF2929 family protein	NA	NA	NA	NA	NA
WP_075667710.1|425084_428384_+	DNA polymerase III subunit alpha	NA	A0A0K1Y9G6	Streptomyces_phage	32.2	5.7e-143
WP_012391189.1|428521_429943_+	pyruvate kinase	NA	NA	NA	NA	NA
428827:428842	attL	GGAAAAGATCGCCGTT	NA	NA	NA	NA
WP_003683209.1|430098_430986_+	S1 RNA-binding protein	NA	NA	NA	NA	NA
WP_015638921.1|430978_431857_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2P1CCU8	Gordonia_phage	32.0	3.9e-06
WP_003684947.1|431837_432221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_046025714.1|432213_433002_+	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_075667708.1|432979_433567_+	SMC-Scp complex subunit ScpB	NA	NA	NA	NA	NA
WP_003684943.1|433567_434293_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_003683198.1|434564_435143_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_031265319.1|435342_436407_+	hypothetical protein	NA	NA	NA	NA	NA
WP_100184657.1|436396_437854_+	ATP-dependent DNA helicase RecQ	NA	F2NZ48	Diadromus_pulchellus_ascovirus	38.7	6.8e-56
WP_114806618.1|437914_438469_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003683185.1|438492_439173_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_003683184.1|439249_440482_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_046025711.1|440559_441873_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003683180.1|442096_442372_+	HU family DNA-binding protein	NA	A0A0H3UZA0	Geobacillus_virus	68.5	3.4e-25
WP_023466150.1|442450_443713_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003683175.1|443826_444684_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_046947983.1|444849_446052_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	48.6	5.8e-45
445425:445440	attR	GGAAAAGATCGCCGTT	NA	NA	NA	NA
WP_114806620.1|446064_447951_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	29.0	2.2e-51
WP_023466146.1|448016_448976_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	63.1	3.5e-117
WP_003683166.1|448987_449491_+	dihydrofolate reductase	NA	A0A1Y0SUI9	Pseudomonas_phage	36.0	5.4e-21
WP_003684928.1|449470_450100_-	hemolysin III family protein	NA	NA	NA	NA	NA
WP_070955569.1|450266_451109_+	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	33.3	3.0e-16
WP_070955570.1|451242_452421_-	3-phosphoglycerate dehydrogenase	NA	M1NSB9	Streptococcus_phage	36.8	8.7e-62
WP_012391200.1|452490_453117_+	chloramphenicol acetyltransferase	NA	A0A2R8FE91	Brazilian_cedratvirus	40.8	4.0e-13
WP_003683158.1|453247_454165_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_003683157.1|454168_454762_+	YpmS family protein	NA	NA	NA	NA	NA
WP_003683156.1|454771_454996_+	YozE family protein	NA	NA	NA	NA	NA
WP_114806622.1|455396_456572_-|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	28.0	1.1e-29
WP_011222020.1|457123_457483_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	43.3	8.1e-19
WP_011222021.1|457469_457832_+	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA	NA
WP_011222022.1|457915_459646_+	arsenical pump-driving ATPase	NA	NA	NA	NA	NA
WP_054737350.1|459704_461000_+	arsenic transporter	NA	A0A2H4PQU3	Staphylococcus_phage	63.3	9.7e-147
>prophage 21
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	465438	497752	2046196	integrase,transposase	Streptococcus_phage(25.0%)	32	464881:464895	485309:485323
464881:464895	attL	CTTTTACCGCGTTCA	NA	NA	NA	NA
WP_114806626.1|465438_466659_+	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	38.9	7.6e-77
WP_114806628.1|466778_466991_+	hypothetical protein	NA	A0A1X9IGE0	Lactococcus_phage	50.0	4.2e-07
WP_114806630.1|467038_467326_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_114806632.1|467349_468228_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	36.4	3.4e-42
WP_114806634.1|468440_469700_+|integrase	site-specific integrase	integrase	C5IUL7	Streptococcus_phage	29.6	1.1e-30
WP_003684924.1|469836_470709_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_012391201.1|470701_471472_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	34.0	9.2e-20
WP_012391202.1|471524_472400_+	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	34.5	1.1e-21
WP_023466136.1|472482_474615_+	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	36.0	7.5e-96
WP_100184083.1|474689_475586_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_003683143.1|475601_476480_+	aldose 1-epimerase family protein	NA	NA	NA	NA	NA
WP_023466131.1|476547_477159_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_012391206.1|477390_479388_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	43.0	2.2e-121
WP_114806636.1|479404_481873_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.9	1.1e-98
WP_003683135.1|481938_482454_+	DUF1440 domain-containing protein	NA	NA	NA	NA	NA
WP_003683133.1|482564_483497_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_015638938.1|483690_484083_+	iron-sulfur cluster biosynthesis family protein	NA	NA	NA	NA	NA
WP_003683130.1|484092_484518_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_046025706.1|485168_485627_+	GAF domain-containing protein	NA	NA	NA	NA	NA
485309:485323	attR	CTTTTACCGCGTTCA	NA	NA	NA	NA
WP_015638946.1|485783_487142_+	cytosine permease	NA	NA	NA	NA	NA
WP_012391211.1|487144_488383_+	cytosine deaminase	NA	NA	NA	NA	NA
WP_024500910.1|488551_490255_+	phosphoenolpyruvate carboxykinase	NA	NA	NA	NA	NA
WP_003683120.1|490350_490722_+	hypothetical protein	NA	NA	NA	NA	NA
WP_114806638.1|490736_492083_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	42.6	1.5e-86
WP_114806640.1|492079_492760_+	DUF554 domain-containing protein	NA	NA	NA	NA	NA
WP_031274563.1|493346_494696_+	MFS transporter	NA	NA	NA	NA	NA
WP_012391217.1|494822_495026_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015638950.1|495040_495196_+	hypothetical protein	NA	NA	NA	NA	NA
WP_114806642.1|495182_495473_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123800313.1|495543_495744_-	chloride channel protein	NA	NA	NA	NA	NA
WP_114806644.1|495972_497223_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A286QQE5	Streptococcus_phage	36.8	2.4e-57
WP_015638493.1|497296_497752_+|transposase	IS200/IS605 family transposase	transposase	A0A0P0IQC6	Lactobacillus_phage	50.0	2.8e-32
>prophage 22
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	509415	510483	2046196		Klosneuvirus(100.0%)	1	NA	NA
WP_111523225.1|509415_510483_+	ornithine cyclodeaminase family protein	NA	A0A1V0SL93	Klosneuvirus	27.3	1.7e-19
>prophage 23
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	513812	517426	2046196		Mycobacterium_phage(50.0%)	4	NA	NA
WP_114806654.1|513812_514703_-	alpha/beta hydrolase	NA	A0A068F2G2	Mycobacterium_phage	28.6	3.9e-14
WP_114806656.1|514721_515246_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_111523227.1|515593_516520_+	YdcF family protein	NA	NA	NA	NA	NA
WP_114806658.1|516553_517426_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	43.1	1.6e-52
>prophage 24
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	522129	528201	2046196		Only_Syngen_Nebraska_virus(33.33%)	6	NA	NA
WP_003683043.1|522129_523056_+	linear amide C-N hydrolase	NA	A0A1J0F9I3	Only_Syngen_Nebraska_virus	38.8	2.8e-15
WP_111523229.1|523083_524262_-	putative C-S lyase	NA	NA	NA	NA	NA
WP_012391236.1|524687_525740_+	2,3-butanediol dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	25.9	7.9e-14
WP_111523230.1|525832_526792_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003684840.1|526807_527437_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003684838.1|527433_528201_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.1	3.4e-22
>prophage 25
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	533615	576943	2046196	integrase,transposase	Lactobacillus_phage(23.08%)	40	531844:531858	543415:543429
531844:531858	attL	TTTAAGAACTGCTTG	NA	NA	NA	NA
WP_088460502.1|533615_534236_-|integrase	tyrosine-type recombinase/integrase	integrase	D2XR58	Bacillus_phage	35.3	3.9e-21
WP_003684822.1|536796_536997_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_187326526.1|537177_537714_-	SDR family NAD(P)-dependent oxidoreductase	NA	W8CYX9	Bacillus_phage	43.5	1.8e-06
WP_164879370.1|537710_537872_-	hypothetical protein	NA	NA	NA	NA	NA
WP_111523219.1|538114_539302_+|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
WP_162816884.1|540721_540946_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080503656.1|540964_541138_-	isocitrate lyase/phosphoenolpyruvate mutase family protein	NA	NA	NA	NA	NA
WP_114806664.1|542127_542901_-	Sua5/YciO/YrdC/YwlC family protein	NA	NA	NA	NA	NA
WP_012391251.1|542921_543506_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
543415:543429	attR	TTTAAGAACTGCTTG	NA	NA	NA	NA
WP_046947943.1|543510_544908_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_012391253.1|544907_545954_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_111523246.1|545966_547307_-	MFS transporter	NA	NA	NA	NA	NA
WP_003684807.1|547664_548645_-	bile acid:sodium symporter family protein	NA	NA	NA	NA	NA
WP_114806666.1|548945_549284_+	metal-sulfur cluster assembly factor	NA	NA	NA	NA	NA
WP_187346128.1|549311_551027_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_114807289.1|551995_552202_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_114806670.1|552283_552856_+|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	34.9	8.6e-23
WP_114806672.1|552872_553655_-	alpha/beta hydrolase	NA	A0A076YK43	Mycobacterium_phage	29.8	3.9e-10
WP_080545982.1|554493_554745_-	citrate lyase holo-[acyl-carrier protein] synthase	NA	NA	NA	NA	NA
WP_012391255.1|554819_555047_-	citrate lyase holo-[acyl-carrier protein] synthase	NA	NA	NA	NA	NA
WP_003684789.1|555093_555474_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003683002.1|555508_556330_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_003684787.1|556339_557764_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	32.7	3.6e-70
WP_003683000.1|557811_559005_+	MFS transporter	NA	NA	NA	NA	NA
WP_114807290.1|559417_560032_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_114806674.1|560928_561381_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	70.3	4.7e-48
WP_003684331.1|561377_562541_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	Q5ULQ4	Lactobacillus_virus	71.7	1.8e-160
WP_114806676.1|562662_563805_-	PLP-dependent transferase	NA	A0A2I2L687	Orpheovirus	25.5	1.2e-07
WP_012391259.1|563817_564729_-	PLP-dependent cysteine synthase family protein	NA	A0A1X9I5K7	Streptococcus_phage	40.8	5.4e-59
WP_003682996.1|565070_565337_+	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_111523252.1|565346_566690_+	PFL family protein	NA	NA	NA	NA	NA
WP_187346124.1|566880_567813_-	WYL domain-containing protein	NA	NA	NA	NA	NA
WP_003682992.1|567893_568286_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069776277.1|568507_568708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_114806680.1|570071_571292_+|transposase	IS256 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	45.7	9.0e-94
WP_111523255.1|571752_572115_-	hypothetical protein	NA	NA	NA	NA	NA
WP_111523256.1|572175_573105_-	EamA family transporter	NA	NA	NA	NA	NA
WP_021349460.1|573346_573931_+	DUF4352 domain-containing protein	NA	A0A0P0IXE0	Lactobacillus_phage	63.2	1.1e-41
WP_114806682.1|574037_575891_-	flavocytochrome c	NA	A0A2P0ZL82	Lactobacillus_phage	62.3	2.0e-217
WP_187346125.1|576016_576943_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	42.9	5.6e-64
>prophage 26
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	580352	581784	2046196		Oenoccocus_phage(50.0%)	2	NA	NA
WP_114806687.1|580352_581093_+	sulfite exporter TauE/SafE family protein	NA	Q6EVM7	Oenoccocus_phage	39.8	2.5e-46
WP_003682974.1|581286_581784_-	phosphatidylglycerophosphatase A	NA	A0A291I9Q0	Lactobacillus_phage	54.3	3.1e-45
>prophage 27
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	599026	599464	2046196		Anguillid_herpesvirus(100.0%)	1	NA	NA
WP_014562434.1|599026_599464_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	42.2	1.6e-24
>prophage 28
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	619775	651971	2046196	transposase	Paenibacillus_phage(21.43%)	30	NA	NA
WP_114806512.1|619775_620996_-|transposase	IS256 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	46.2	2.4e-94
WP_114806708.1|621403_621697_+	HigA family addiction module antidote protein	NA	NA	NA	NA	NA
WP_015639061.1|621787_622075_-	Small membrane protein	NA	NA	NA	NA	NA
WP_114806710.1|623498_624830_-	guanine deaminase	NA	NA	NA	NA	NA
WP_015639064.1|624951_626103_-	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_003682928.1|626359_626509_-	hypothetical protein	NA	NA	NA	NA	NA
WP_046948998.1|627000_627417_-	arsenate reductase ArsC	NA	A0A2H4PQT9	Staphylococcus_phage	36.6	1.1e-14
WP_114806712.1|627413_628097_-	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	45.0	1.2e-10
WP_114806714.1|628180_628609_-	NADH-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_114806716.1|628723_629230_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_114806718.1|629587_630160_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	35.4	1.7e-23
WP_114807289.1|630241_630448_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_114806720.1|630574_631924_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_114806722.1|632259_633234_-	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_114806680.1|633790_635011_-|transposase	IS256 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	45.7	9.0e-94
WP_114806725.1|635716_636358_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	35.5	4.1e-21
WP_111523279.1|636350_637118_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_114806727.1|637236_638400_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	Q5ULQ4	Lactobacillus_virus	71.1	5.8e-159
WP_114806729.1|638396_638834_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	69.6	1.2e-48
WP_114806730.1|639019_640702_-	acetolactate synthase AlsS	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	23.6	6.5e-34
WP_012391296.1|641186_642911_-	DUF2075 domain-containing protein	NA	NA	NA	NA	NA
WP_023465823.1|642996_643749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_114806462.1|644841_646128_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	31.2	2.3e-47
WP_111523436.1|646469_647084_+	helix-turn-helix domain-containing protein	NA	A0A0C5AJ29	Paenibacillus_phage	38.0	7.3e-28
WP_114806732.1|647020_647926_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	27.8	1.2e-13
WP_114806734.1|648139_648472_-	CrcB family protein	NA	A0A2H4PQR0	Staphylococcus_phage	39.1	1.3e-10
WP_012391303.1|648468_648834_-	CrcB family protein	NA	NA	NA	NA	NA
WP_004563103.1|648956_649349_+	VOC family protein	NA	NA	NA	NA	NA
WP_114806736.1|649423_649981_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_111523293.1|650255_651971_+	AarF/ABC1/UbiB kinase family protein	NA	A9YVW0	Ostreococcus_tauri_virus	27.7	5.0e-34
>prophage 29
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	664731	666809	2046196	transposase	Lactobacillus_phage(50.0%)	2	NA	NA
WP_114806752.1|664731_665199_-|transposase	IS200/IS605 family transposase	transposase	A0A0P0IQC6	Lactobacillus_phage	49.6	2.0e-30
WP_114806512.1|665588_666809_-|transposase	IS256 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	46.2	2.4e-94
>prophage 30
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	693125	693896	2046196		Planktothrix_phage(100.0%)	1	NA	NA
WP_111523305.1|693125_693896_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.0	7.3e-17
>prophage 31
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	701144	704928	2046196		Mycobacterium_phage(33.33%)	4	NA	NA
WP_004563158.1|701144_701615_-	SUF system NifU family Fe-S cluster assembly protein	NA	A0A0K1LSF9	Mycobacterium_phage	35.3	6.6e-13
WP_111523307.1|701601_702840_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	46.7	1.9e-107
WP_003683446.1|702823_704119_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_003683444.1|704130_704928_-	Fe-S cluster assembly ATPase SufC	NA	A0A285PWH2	Cedratvirus	25.5	2.0e-09
>prophage 32
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	709620	710604	2046196		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_012391348.1|709620_710604_-	D-2-hydroxyacid dehydrogenase	NA	M1HTA3	Paramecium_bursaria_Chlorella_virus	34.2	1.9e-41
>prophage 33
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	715370	720024	2046196		Pandoravirus(50.0%)	4	NA	NA
WP_114806761.1|715370_716537_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	33.4	9.0e-35
WP_003683419.1|716530_716800_-	chorismate mutase	NA	NA	NA	NA	NA
WP_114806763.1|716792_717989_-	MFS transporter	NA	NA	NA	NA	NA
WP_111523314.1|718533_720024_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.6	5.3e-64
>prophage 34
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	729013	732496	2046196	transposase	Acanthocystis_turfacea_Chlorella_virus(50.0%)	2	NA	NA
WP_023465881.1|729013_731023_+	KUP/HAK/KT family potassium transporter	NA	M1IBC2	Acanthocystis_turfacea_Chlorella_virus	35.7	2.0e-66
WP_114806462.1|731209_732496_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	31.2	2.3e-47
>prophage 35
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	750090	752545	2046196		Bodo_saltans_virus(50.0%)	2	NA	NA
WP_003683356.1|750090_751110_-	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	30.4	4.5e-14
WP_111523318.1|751138_752545_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.8	9.5e-47
>prophage 36
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	763292	771916	2046196		Staphylococcus_phage(50.0%)	10	NA	NA
WP_003683335.1|763292_763949_+	HD domain-containing protein	NA	A0A1S5V2G8	Saudi_moumouvirus	27.9	2.2e-06
WP_114806773.1|763945_764689_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_114806775.1|764962_765574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_114806777.1|765570_766449_-	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	38.2	1.2e-15
WP_070447486.1|766639_768331_+	NFACT family protein	NA	M1I5P2	Paramecium_bursaria_Chlorella_virus	36.2	1.5e-09
WP_114806779.1|768652_769831_-	iron reductase	NA	NA	NA	NA	NA
WP_114806781.1|769823_770489_-	flavodoxin	NA	NA	NA	NA	NA
WP_151384073.1|770519_770711_-	transferase	NA	NA	NA	NA	NA
WP_151384061.1|770781_771039_-	hypothetical protein	NA	NA	NA	NA	NA
WP_114806783.1|771067_771916_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	39.8	1.2e-44
>prophage 37
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	776590	777466	2046196		Bodo_saltans_virus(100.0%)	1	NA	NA
WP_046947974.1|776590_777466_-	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	28.0	1.6e-07
>prophage 38
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	782446	832060	2046196	transposase,tRNA	Bacillus_phage(28.57%)	38	NA	NA
WP_114806793.1|782446_782734_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_114806795.1|782757_783636_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	36.1	3.7e-41
WP_114806797.1|783621_784605_-	KxYKxGKxW signal peptide domain-containing protein	NA	NA	NA	NA	NA
WP_114806799.1|785402_786881_+	amidase	NA	NA	NA	NA	NA
WP_114806801.1|787031_787895_+	YfcC family protein	NA	NA	NA	NA	NA
WP_114806803.1|788099_789233_-	class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
WP_003683293.1|789275_789725_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_114806805.1|789728_790910_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_114806807.1|791017_792952_-	GTP-binding protein	NA	D0R0F5	Streptococcus_phage	28.8	8.1e-65
WP_015639179.1|793604_793964_-	cell division regulator GpsB	NA	NA	NA	NA	NA
WP_004563219.1|794071_794668_-	DUF1273 domain-containing protein	NA	NA	NA	NA	NA
WP_111523340.1|794759_795395_+	Holliday junction resolvase RecU	NA	A0A1B1P798	Bacillus_phage	36.2	1.9e-23
WP_114806809.1|795387_797652_+	transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_004563221.1|797758_798670_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003683273.1|798792_799812_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_114806811.1|800247_801258_-	DUF1002 domain-containing protein	NA	NA	NA	NA	NA
WP_003683269.1|801357_802086_-	DnaD domain protein	NA	A0A0N7AE27	Bacillus_phage	37.1	3.5e-13
WP_004563225.1|802177_803473_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2K9KZD3	Tupanvirus	29.4	5.8e-51
WP_004563226.1|803499_804018_-	DUF5590 domain-containing protein	NA	NA	NA	NA	NA
WP_101888929.1|804068_806909_-	3'-5' exoribonuclease	NA	A0A1X9I5C8	Streptococcus_phage	29.9	1.7e-82
WP_003683265.1|807138_808074_+	mevalonate kinase	NA	NA	NA	NA	NA
WP_114806813.1|808075_809065_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
WP_003683263.1|809084_810194_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
WP_003683262.1|810249_811335_+	type 2 isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA	NA
WP_114806815.1|811491_812250_-	ATP-binding cassette domain-containing protein	NA	A0A2H4UUX5	Bodo_saltans_virus	27.4	2.5e-09
WP_114806817.1|812445_813696_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A286QQE5	Streptococcus_phage	37.3	2.8e-58
WP_114806819.1|813769_814225_+|transposase	IS200/IS605 family transposase	transposase	A0A0P0IQC6	Lactobacillus_phage	49.3	2.4e-31
WP_035431171.1|814275_815649_-	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
WP_012391417.1|815777_816584_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_012391418.1|816815_817733_-	dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_114806821.1|817745_820925_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_114806823.1|820924_822007_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.6	1.5e-55
WP_114806825.1|822008_823298_-	dihydroorotase	NA	NA	NA	NA	NA
WP_114806827.1|823297_824263_-	aspartate carbamoyltransferase catalytic subunit	NA	M1HGA5	Paramecium_bursaria_Chlorella_virus	30.3	5.0e-23
WP_114806829.1|824711_825590_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	36.1	3.7e-41
WP_114806831.1|825613_825901_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_114806462.1|828836_830123_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	31.2	2.3e-47
WP_114806833.1|831181_832060_-	type I-E CRISPR-associated endoribonuclease Cas2	NA	A0A0K2SUJ2	Clostridium_phage	34.5	3.4e-10
>prophage 39
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	845385	849808	2046196		Bacillus_virus(33.33%)	5	NA	NA
WP_012391435.1|845385_846141_-	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.6	1.4e-15
WP_114806843.1|846153_847035_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_003683880.1|847036_847936_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_004563249.1|847935_848811_-	phosphate ABC transporter substrate-binding protein	NA	H6WG65	Cyanophage	31.2	3.4e-10
WP_004563250.1|849103_849808_+	winged helix-turn-helix domain-containing protein	NA	W8CYM9	Bacillus_phage	28.6	9.6e-16
>prophage 40
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	858462	859161	2046196		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_003683860.1|858462_859161_-	ribonuclease III	NA	L7RCJ8	Acanthamoeba_polyphaga_moumouvirus	33.2	1.5e-21
>prophage 41
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	867588	878691	2046196	transposase,tRNA	Planktothrix_phage(20.0%)	10	NA	NA
WP_021349887.1|867588_869511_-	Stk1 family PASTA domain-containing Ser/Thr kinase	NA	G9BWE0	Planktothrix_phage	29.6	9.4e-21
WP_003683838.1|869514_870252_-	Stp1/IreP family PP2C-type Ser/Thr phosphatase	NA	NA	NA	NA	NA
WP_114806854.1|870270_871617_-	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA	NA
WP_003683834.1|871609_872560_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	32.7	1.5e-11
WP_003683832.1|872582_875000_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_111523368.1|874971_876201_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	37.7	3.0e-49
WP_003686267.1|876271_876556_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_003683827.1|876552_877173_-	guanylate kinase	NA	A0A212Q4J6	Cowpox_virus	29.0	2.2e-19
WP_114806856.1|877227_877683_+	hypothetical protein	NA	NA	NA	NA	NA
WP_187346126.1|877704_878691_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.6	2.4e-44
>prophage 42
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	883038	887549	2046196		Klosneuvirus(33.33%)	5	NA	NA
WP_114806862.1|883038_884487_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SIT1	Klosneuvirus	30.7	1.6e-33
WP_003683810.1|884487_885345_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	38.9	8.4e-38
WP_003683805.1|885522_885942_-	transcription antitermination factor NusB	NA	NA	NA	NA	NA
WP_114806864.1|885941_886382_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_114806866.1|886472_887549_-	aminopeptidase P family protein	NA	A0A0P0I8D7	Acinetobacter_phage	31.7	7.1e-10
>prophage 43
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	893090	894443	2046196		Acanthamoeba_polyphaga_mimivirus(100.0%)	1	NA	NA
WP_003686242.1|893090_894443_-	type I glutamate--ammonia ligase	NA	A0A0G2Y5U6	Acanthamoeba_polyphaga_mimivirus	25.6	1.9e-12
>prophage 44
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	904929	909203	2046196	tRNA	Catovirus(50.0%)	3	NA	NA
WP_012391468.1|904929_905580_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	36.1	5.0e-35
WP_111523378.1|905712_908151_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003683751.1|908156_909203_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.1	1.1e-26
>prophage 45
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	914730	916936	2046196		Bacillus_phage(100.0%)	2	NA	NA
WP_111523379.1|914730_916236_-	HAMP domain-containing protein	NA	W8CYF6	Bacillus_phage	30.1	3.4e-26
WP_003683732.1|916249_916936_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	32.4	2.3e-30
>prophage 46
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	924976	932742	2046196		Bacillus_phage(50.0%)	7	NA	NA
WP_003683701.1|924976_925486_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	32.1	6.1e-12
WP_003686205.1|925703_926648_-	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	44.4	1.5e-27
WP_114806879.1|926680_928042_-	DnaD domain protein	NA	NA	NA	NA	NA
WP_003686203.1|928041_928500_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_003683697.1|928544_929165_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003683696.1|929157_929997_-	DNA-formamidopyrimidine glycosylase	NA	A0A127AWE5	Bacillus_phage	25.5	2.0e-15
WP_114806881.1|930081_932742_-	DNA polymerase I	NA	A0A142F1Q9	Bacillus_phage	29.7	1.0e-57
>prophage 47
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	939436	940162	2046196		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_003686186.1|939436_940162_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.3	1.6e-18
>prophage 48
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	946279	947968	2046196	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_114806889.1|946279_947968_-|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	32.0	1.5e-67
>prophage 49
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	952192	958213	2046196	protease	Vibrio_phage(25.0%)	8	NA	NA
WP_003683662.1|952192_952765_-	GTP cyclohydrolase I FolE	NA	A0A2I7S8W4	Vibrio_phage	43.4	1.5e-35
WP_003683660.1|952746_953265_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003683659.1|953254_953626_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_114806891.1|953841_954525_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003686160.1|954543_955551_-	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	31.5	6.6e-26
WP_024501065.1|955624_956233_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003683652.1|956362_956995_+	deoxynucleoside kinase	NA	C1KFI3	Lactobacillus_virus	46.8	8.6e-48
WP_114806893.1|957094_958213_-	glycoside hydrolase family 73 protein	NA	A0A0K2CP65	Brevibacillus_phage	43.1	1.3e-19
>prophage 50
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	965539	972790	2046196	tRNA	Staphylococcus_phage(50.0%)	5	NA	NA
WP_114806897.1|965539_967957_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	66.7	0.0e+00
WP_114806899.1|968294_969026_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_015639269.1|969284_970526_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	55.1	1.4e-107
WP_015639270.1|970528_971320_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	39.1	1.6e-43
WP_021349075.1|971602_972790_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	67.9	2.0e-143
>prophage 51
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	981817	989568	2046196		Enterococcus_phage(75.0%)	6	NA	NA
WP_114806907.1|981817_982768_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A0E3XCL7	Enterococcus_phage	70.6	6.0e-21
WP_111523407.1|983176_984247_-	NAD(P)-dependent alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	25.2	1.7e-08
WP_003683599.1|984455_985793_-	purine/pyrimidine permease	NA	NA	NA	NA	NA
WP_114806909.1|985944_986817_-	SufD family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_012391514.1|986825_987407_-	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A0C5K925	Enterococcus_phage	59.7	3.6e-53
WP_031274637.1|987351_989568_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	58.8	1.3e-247
>prophage 52
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1005796	1013989	2046196	protease	Bacillus_virus(50.0%)	7	NA	NA
WP_012391520.1|1005796_1008043_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	39.1	1.7e-122
WP_012391521.1|1008295_1009003_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_114806913.1|1009129_1009705_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	36.9	5.8e-27
WP_114806915.1|1009697_1011125_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.2	9.2e-98
WP_003684189.1|1011721_1012315_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_003684188.1|1012470_1013190_+	MucBP domain-containing protein	NA	NA	NA	NA	NA
WP_108458715.1|1013200_1013989_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	34.5	3.3e-25
>prophage 53
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1017539	1021061	2046196	transposase	Staphylococcus_phage(33.33%)	5	NA	NA
WP_075667534.1|1017539_1018400_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.6e-17
WP_075667533.1|1018386_1018764_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_041812692.1|1018942_1019821_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	36.8	5.2e-43
WP_003686795.1|1019844_1020060_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075667532.1|1020137_1021061_-	dTDP-glucose 4,6-dehydratase	NA	M1I1Z9	Acanthocystis_turfacea_Chlorella_virus	39.4	1.9e-56
>prophage 54
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1025536	1030543	2046196		Streptococcus_phage(50.0%)	3	NA	NA
WP_048340525.1|1025536_1027147_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	25.8	1.4e-33
WP_187346119.1|1027106_1028819_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075667528.1|1029577_1030543_-	glycosyltransferase family 2 protein	NA	A8CG95	Salmonella_phage	34.5	2.2e-47
>prophage 55
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1033544	1043065	2046196	transposase	Oenococcus_phage(25.0%)	7	NA	NA
WP_021350368.1|1033544_1034477_-	glycosyltransferase family 2 protein	NA	V5USA4	Oenococcus_phage	50.0	5.8e-77
WP_075667525.1|1034566_1035130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_114807292.1|1035272_1036988_-	C40 family peptidase	NA	A0A1W6DXV0	Rhodococcus_phage	48.7	4.9e-13
WP_114806512.1|1037293_1038514_+|transposase	IS256 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	46.2	2.4e-94
WP_162816885.1|1038619_1038964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_114806924.1|1039028_1040222_-	KxYKxGKxW signal peptide domain-containing protein	NA	NA	NA	NA	NA
WP_114806926.1|1041241_1043065_-	glucosaminidase domain-containing protein	NA	A0A249Y0X5	Enterococcus_phage	48.0	4.4e-28
>prophage 56
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1046712	1047834	2046196		Streptococcus_phage(100.0%)	1	NA	NA
WP_021350387.1|1046712_1047834_-	UDP-galactopyranose mutase	NA	E4ZFQ1	Streptococcus_phage	78.1	1.3e-171
>prophage 57
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1062320	1063640	2046196		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_014562594.1|1062320_1063640_-	DEAD/DEAH box helicase	NA	A0A1B1IS59	uncultured_Mediterranean_phage	26.9	1.0e-34
>prophage 58
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1070411	1072037	2046196		Klosneuvirus(100.0%)	1	NA	NA
WP_114806942.1|1070411_1072037_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	26.7	3.3e-51
>prophage 59
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1077221	1079389	2046196	protease	Streptococcus_phage(50.0%)	4	NA	NA
WP_114806950.1|1077221_1077740_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	46.2	1.2e-31
WP_114806952.1|1077830_1078424_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_114806954.1|1078440_1078662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_114806956.1|1078699_1079389_-	class I SAM-dependent methyltransferase	NA	A0A097BYE1	Leuconostoc_phage	41.6	3.4e-34
>prophage 60
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1088204	1096152	2046196	transposase	Bacillus_phage(66.67%)	6	NA	NA
WP_114806971.1|1088204_1089110_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	29.0	1.8e-14
WP_114806973.1|1089385_1090756_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003688751.1|1091499_1091787_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_114806975.1|1091810_1092689_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	36.1	9.8e-42
WP_111523439.1|1093791_1094295_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_114806979.1|1094775_1096152_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	52.0	1.1e-129
>prophage 61
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1101797	1117024	2046196	transposase,tRNA	Ralstonia_phage(14.29%)	14	NA	NA
WP_012391582.1|1101797_1103837_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	34.9	2.2e-100
WP_114806985.1|1103838_1106109_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.8	2.2e-133
WP_114806987.1|1106286_1107459_-	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
WP_004562973.1|1107460_1108048_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_004562972.1|1108063_1108678_-	glycoside hydrolase family 73 protein	NA	S5M633	Brevibacillus_phage	51.7	2.9e-32
WP_003681624.1|1109072_1109846_-	(S)-acetoin forming diacetyl reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.2	1.4e-15
WP_114806989.1|1110129_1111236_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_114806462.1|1111375_1112662_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	31.2	2.3e-47
WP_004562969.1|1112807_1113203_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_004562968.1|1113216_1113660_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_003681620.1|1113766_1114543_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_003681619.1|1114558_1115362_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_015639392.1|1115354_1116221_-	energy-coupling factor transporter ATPase	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	30.7	5.3e-16
WP_187346130.1|1116193_1117024_-	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	33.0	5.3e-21
>prophage 62
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1131607	1133692	2046196		Streptococcus_phage(100.0%)	1	NA	NA
WP_003681566.1|1131607_1133692_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	28.2	7.9e-66
>prophage 63
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1137954	1151848	2046196	transposase,protease	Chrysochromulina_ericina_virus(20.0%)	7	NA	NA
WP_111523448.1|1137954_1141602_-	DNA-directed RNA polymerase subunit beta'	NA	A0A0N9QZ01	Chrysochromulina_ericina_virus	24.3	4.6e-61
WP_111523449.1|1141639_1145221_-	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.6	3.5e-53
WP_003681554.1|1145436_1146030_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_114806995.1|1146215_1148720_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	39.8	1.1e-125
WP_003681550.1|1148738_1149209_-	CtsR family transcriptional regulator	NA	NA	NA	NA	NA
WP_114806462.1|1149452_1150739_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	31.2	2.3e-47
WP_004562952.1|1150828_1151848_-	alcohol dehydrogenase AdhP	NA	E3SJ82	Synechococcus_phage	26.8	5.7e-17
>prophage 64
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1157054	1157696	2046196		Lactobacillus_virus(100.0%)	1	NA	NA
WP_003681522.1|1157054_1157696_-	deoxynucleoside kinase	NA	C1KFI3	Lactobacillus_virus	52.5	5.4e-58
>prophage 65
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1163307	1163508	2046196		Lactococcus_phage(100.0%)	1	NA	NA
WP_004562929.1|1163307_1163508_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	66.7	6.9e-20
>prophage 66
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1178172	1182876	2046196		Enterobacteria_phage(50.0%)	4	NA	NA
WP_012391621.1|1178172_1179258_-	GntR family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	23.8	1.4e-10
WP_046025438.1|1179417_1180146_-	L-ribulose-5-phosphate 4-epimerase	NA	NA	NA	NA	NA
WP_057194517.1|1180156_1181761_-	FGGY-family carbohydrate kinase	NA	NA	NA	NA	NA
WP_101889158.1|1181991_1182876_-	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	31.7	3.1e-11
>prophage 67
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1188000	1193367	2046196	transposase	Bacillus_phage(66.67%)	7	NA	NA
WP_075667738.1|1188000_1188663_-	uracil-DNA glycosylase	NA	A0A127AW33	Bacillus_phage	29.7	1.5e-07
WP_114807009.1|1188680_1190018_-	threonine/serine exporter family protein	NA	NA	NA	NA	NA
WP_114807011.1|1190092_1190986_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015639424.1|1191094_1191631_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_162816886.1|1191627_1192263_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	40.2	3.6e-30
WP_096494467.1|1192296_1192515_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_046025444.1|1192578_1193367_-	alpha/beta hydrolase	NA	A0A1J0MAD8	Mycobacterium_phage	26.7	1.2e-09
>prophage 68
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1203632	1208791	2046196		Lactobacillus_phage(100.0%)	4	NA	NA
WP_015639435.1|1203632_1205027_-	flavocytochrome c	NA	A0A2P0ZL82	Lactobacillus_phage	33.9	2.4e-58
WP_114807021.1|1205036_1206425_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_004562906.1|1206807_1207419_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	51.9	8.8e-50
WP_023466027.1|1207438_1208791_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	55.9	3.5e-54
>prophage 69
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1213698	1219546	2046196		Bodo_saltans_virus(33.33%)	4	NA	NA
WP_003681444.1|1213698_1214286_-	peptidylprolyl isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	41.6	2.8e-24
WP_114807025.1|1214506_1216465_-	PTS beta-glucoside transporter subunit IIBCA	NA	NA	NA	NA	NA
WP_031274846.1|1216613_1217624_-	zinc-dependent alcohol dehydrogenase family protein	NA	K7Z7U2	Megavirus	28.3	1.1e-25
WP_012391639.1|1218073_1219546_+	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	23.6	4.8e-17
>prophage 70
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1227024	1235503	2046196		Bacillus_phage(66.67%)	7	NA	NA
WP_114807032.1|1227024_1228278_-	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	22.3	7.2e-06
WP_069775768.1|1228418_1228967_-	hypothetical protein	NA	NA	NA	NA	NA
WP_114807034.1|1229146_1230178_+	lactonase family protein	NA	NA	NA	NA	NA
WP_012391648.1|1230270_1230858_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003681416.1|1230854_1231166_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_114807036.1|1231174_1234117_-	DEAD/DEAH box helicase	NA	Q5YA94	Bacillus_phage	27.3	8.9e-31
WP_114807038.1|1234252_1235503_-	DNA (cytosine-5-)-methyltransferase	NA	A0A219UR24	Bacillus_phage	26.8	1.5e-27
>prophage 71
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1243373	1244546	2046196		Mycobacterium_phage(100.0%)	1	NA	NA
WP_114807046.1|1243373_1244546_+	DHA2 family efflux MFS transporter permease subunit	NA	A0A0M3UL24	Mycobacterium_phage	27.0	1.8e-11
>prophage 72
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1247824	1253978	2046196		uncultured_virus(25.0%)	6	NA	NA
WP_004562877.1|1247824_1248940_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	A0A218MNE0	uncultured_virus	40.9	3.6e-73
WP_114807050.1|1249371_1249752_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_114807052.1|1249820_1250831_-	aspartate--ammonia ligase	NA	A0A1C9C5F0	Heterosigma_akashiwo_virus	43.5	6.3e-61
WP_003681382.1|1251024_1251621_+	glycoside hydrolase family 73 protein	NA	S5M633	Brevibacillus_phage	51.0	6.2e-32
WP_004562874.1|1251639_1252161_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_114807054.1|1252457_1253978_+	LytTR family transcriptional regulator	NA	Q6DMX4	Streptococcus_phage	28.0	1.2e-31
>prophage 73
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1263196	1294273	2046196	transposase	Planktothrix_phage(30.0%)	26	NA	NA
WP_114807058.1|1263196_1264528_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2I2L5E1	Orpheovirus	28.3	5.9e-06
WP_003681362.1|1264681_1264996_-	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	34.0	1.4e-14
WP_114807061.1|1266045_1267296_-|transposase	transposase	transposase	A0A286QQE5	Streptococcus_phage	36.5	1.1e-57
WP_114807294.1|1267371_1267827_+|transposase	IS200/IS605 family transposase	transposase	A0A0P0IQC6	Lactobacillus_phage	51.5	2.8e-32
WP_021350096.1|1268015_1268264_-	hypothetical protein	NA	NA	NA	NA	NA
WP_035423707.1|1268619_1269972_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_003681354.1|1269952_1271407_-	amino acid permease	NA	NA	NA	NA	NA
WP_114807063.1|1272325_1273156_-	YbgC/FadM family acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_015639482.1|1273253_1273784_+	galactoside O-acetyltransferase	NA	NA	NA	NA	NA
WP_114807065.1|1274006_1275389_-	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_015639484.1|1275388_1276678_-	argininosuccinate synthase	NA	NA	NA	NA	NA
WP_003681341.1|1276886_1278764_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003681339.1|1278756_1279329_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_087908192.1|1279446_1279710_+	ABC transporter	NA	G9BWD6	Planktothrix_phage	44.2	3.4e-06
WP_114807067.1|1279800_1280748_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_114807069.1|1280774_1281242_-	FMN-binding protein	NA	NA	NA	NA	NA
WP_114807071.1|1281459_1283445_-	ABC transporter ATP-binding protein/permease	NA	G9BWD6	Planktothrix_phage	38.3	7.1e-32
WP_087908195.1|1283531_1284200_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_114807073.1|1284598_1285819_+|transposase	IS256 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	46.0	1.8e-94
WP_004562837.1|1285931_1286615_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003685790.1|1286604_1287603_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003685789.1|1287964_1288720_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.1	3.7e-29
WP_003685788.1|1288721_1290662_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_114807075.1|1291081_1292221_+|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	33.3	8.8e-43
WP_080545988.1|1292362_1292806_-|transposase	transposase	transposase	A0A1X9I619	Streptococcus_phage	54.6	5.3e-36
WP_114807077.1|1293085_1294273_+|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
>prophage 74
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1300128	1302894	2046196		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_114807079.1|1300128_1302894_+	cation-transporting P-type ATPase	NA	M1HGW4	Paramecium_bursaria_Chlorella_virus	27.6	1.4e-65
>prophage 75
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1305909	1366627	2046196	transposase	Streptococcus_phage(19.05%)	51	NA	NA
WP_114807081.1|1305909_1307160_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A286QQE5	Streptococcus_phage	37.2	8.4e-55
WP_114807083.1|1307453_1308332_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	35.7	3.1e-40
WP_003688751.1|1308355_1308643_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_114807085.1|1308710_1310090_-	SAM-dependent DNA methyltransferase	NA	A0A2H4PQP4	Staphylococcus_phage	30.1	3.1e-42
WP_162816887.1|1310179_1312039_-	hypothetical protein	NA	NA	NA	NA	NA
WP_114807089.1|1312312_1313866_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	28.0	1.7e-17
WP_054173610.1|1314180_1314792_+	GTP pyrophosphokinase	NA	NA	NA	NA	NA
WP_021349574.1|1314805_1315477_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	29.1	8.9e-19
WP_114807091.1|1315489_1316743_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_003685321.1|1317057_1317981_-	type I pantothenate kinase	NA	A0A1B1ISL9	uncultured_Mediterranean_phage	33.8	1.2e-29
WP_114807093.1|1318091_1318643_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_114807095.1|1318739_1320833_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	45.5	5.2e-150
WP_003685329.1|1321066_1321972_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003685331.1|1322064_1324359_-	ATP-binding domain-containing protein	NA	NA	NA	NA	NA
WP_046948087.1|1324541_1325198_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_003685336.1|1325322_1325967_+	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	30.2	4.8e-06
WP_003685338.1|1325988_1327266_+	GTPase HflX	NA	NA	NA	NA	NA
WP_111523519.1|1327487_1328597_+	o-succinylbenzoate synthase	NA	NA	NA	NA	NA
WP_114807097.1|1328658_1329381_-	nicotinamide mononucleotide transporter	NA	NA	NA	NA	NA
WP_041807893.1|1329729_1331328_-	APC family permease	NA	NA	NA	NA	NA
WP_003681285.1|1331501_1331999_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_014562142.1|1332612_1333788_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0P0ICY9	Lactobacillus_phage	55.2	6.8e-115
WP_014081459.1|1333787_1334186_-|transposase	IS200/IS605 family transposase	transposase	A0A286QN76	Streptococcus_phage	62.9	1.1e-45
WP_114807099.1|1335015_1337727_-	YhgE/Pip domain-containing protein	NA	NA	NA	NA	NA
WP_024271724.1|1337765_1338302_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_114807101.1|1338527_1339571_+	galactose mutarotase	NA	NA	NA	NA	NA
WP_003681273.1|1339824_1340742_-	hypothetical protein	NA	NA	NA	NA	NA
WP_114807103.1|1340753_1341233_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003681269.1|1341333_1341783_-	transcriptional repressor	NA	NA	NA	NA	NA
WP_003681268.1|1341824_1342409_-	guanylate kinase	NA	S4W1R9	Pandoravirus	34.5	5.5e-09
WP_003685361.1|1342408_1342825_-	NUDIX domain-containing protein	NA	A0A2H4UTN1	Bodo_saltans_virus	31.3	5.3e-06
WP_114807105.1|1342925_1344314_+	amino acid permease	NA	NA	NA	NA	NA
WP_114807107.1|1344678_1347075_+	Xaa-Pro dipeptidyl-peptidase	NA	NA	NA	NA	NA
WP_003685364.1|1347156_1348068_+	proline-specific peptidase family protein	NA	NA	NA	NA	NA
WP_003681263.1|1348089_1348728_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_114807109.1|1349046_1350783_+	DUF2325 domain-containing protein	NA	NA	NA	NA	NA
WP_003681260.1|1351010_1351961_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	52.7	2.9e-92
WP_012391704.1|1351970_1352891_-	ribonucleotide-diphosphate reductase subunit beta	NA	A0A160DHK0	Gordonia_phage	30.9	2.3e-25
WP_003681258.1|1352901_1355067_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	57.6	4.7e-239
WP_003681257.1|1355063_1355525_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA	NA
WP_015639530.1|1355878_1356478_+	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_021349773.1|1356470_1356614_+	hypothetical protein	NA	NA	NA	NA	NA
WP_114807111.1|1356832_1357906_-	phosphoesterase	NA	A0A289YMW0	Serratia_phage	25.9	7.8e-09
WP_003681253.1|1357994_1359539_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	27.9	3.2e-48
WP_114807112.1|1360097_1361090_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_114807113.1|1361089_1361989_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003681249.1|1361981_1362743_+	ATP-binding cassette domain-containing protein	NA	A0A1V0SE00	Indivirus	27.9	2.2e-10
WP_114807114.1|1363148_1364399_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A286QQE5	Streptococcus_phage	37.0	1.1e-57
WP_114807115.1|1364472_1364928_+|transposase	IS200/IS605 family transposase	transposase	A0A0P0IQC6	Lactobacillus_phage	50.0	3.1e-31
WP_041807900.1|1365003_1365333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_101889130.1|1365412_1366627_-	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	29.8	5.9e-29
>prophage 76
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1371853	1426091	2046196	transposase	Streptococcus_phage(26.32%)	50	NA	NA
WP_003685393.1|1371853_1372738_-	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	27.9	8.1e-20
WP_003681233.1|1372857_1373778_-	ribokinase	NA	NA	NA	NA	NA
WP_003681231.1|1374062_1374383_-	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	41.6	3.2e-19
WP_003681229.1|1374357_1375167_-	TerC family protein	NA	S5MAL1	Bacillus_phage	44.0	3.4e-41
WP_015639537.1|1375223_1376111_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_003681225.1|1376200_1377121_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_023465622.1|1377343_1378675_+	purine permease	NA	Q9KX94	Enterobacteria_phage	29.3	2.5e-28
WP_114807116.1|1378745_1379279_+	helix-turn-helix domain-containing protein	NA	A0A2I6AZV8	Macacine_betaherpesvirus	28.7	5.8e-05
WP_114807117.1|1379410_1380130_+|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	43.9	2.2e-39
WP_114807118.1|1380242_1381382_+|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	33.3	8.8e-43
WP_021349996.1|1381494_1382349_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_012391720.1|1382750_1383404_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_114807119.1|1383627_1385757_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	50.0	5.4e-171
WP_021349998.1|1386151_1386628_+	hypothetical protein	NA	NA	NA	NA	NA
WP_035429107.1|1386728_1387376_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_003681210.1|1387353_1387902_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_003681208.1|1387901_1388132_-	cation transporter	NA	NA	NA	NA	NA
WP_111523535.1|1388193_1390047_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	34.7	1.2e-84
WP_003681199.1|1390240_1391233_-	NAD(P)/FAD-dependent oxidoreductase	NA	Q9JRK7	Streptococcus_phage	41.1	1.0e-18
WP_003685407.1|1391405_1392365_+	nucleoside hydrolase	NA	NA	NA	NA	NA
WP_003685409.1|1392901_1393471_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_046948746.1|1393474_1394857_+	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.7	4.7e-14
WP_114807120.1|1394846_1395500_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_114807121.1|1395544_1395904_+	DUF4870 domain-containing protein	NA	NA	NA	NA	NA
WP_012391730.1|1395994_1397956_+	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_114807122.1|1398493_1399507_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_114807123.1|1400313_1401276_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003685424.1|1401405_1401831_+	helix-turn-helix transcriptional regulator	NA	A0A0H4ITV7	Staphylococcus_phage	42.9	1.9e-06
WP_003681179.1|1401827_1402679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012391734.1|1403049_1403526_-	hypothetical protein	NA	NA	NA	NA	NA
WP_114807124.1|1403532_1403931_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003681176.1|1404029_1404500_+	universal stress protein	NA	NA	NA	NA	NA
WP_003681175.1|1404526_1404877_+	ANTAR domain-containing protein	NA	NA	NA	NA	NA
WP_003685435.1|1405056_1405875_+	SPFH/Band 7/PHB domain protein	NA	NA	NA	NA	NA
WP_111523540.1|1406089_1407451_-	MFS transporter	NA	NA	NA	NA	NA
WP_114807125.1|1409678_1410425_-	transaldolase	NA	E3SKN5	Synechococcus_phage	30.2	4.3e-14
WP_003681165.1|1410816_1411497_-	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA	NA
WP_114807126.1|1412777_1413746_-|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
WP_015639559.1|1414187_1415168_-	HoxN/HupN/NixA family nickel/cobalt transporter	NA	NA	NA	NA	NA
WP_015639560.1|1415254_1415977_-	aquaporin family protein	NA	M1IAZ4	Acanthocystis_turfacea_Chlorella_virus	32.2	8.1e-26
WP_069775846.1|1415984_1416821_-	ATP-dependent sacrificial sulfur transferase LarE	NA	NA	NA	NA	NA
WP_003681156.1|1416827_1418060_-	nickel pincer cofactor biosynthesis protein LarC	NA	NA	NA	NA	NA
WP_003681154.1|1418056_1418818_-	nickel pincer cofactor biosynthesis protein LarB	NA	A0A288TYA6	Enterococcus_phage	43.4	5.2e-23
WP_114807127.1|1418820_1420101_-	nickel-dependent lactate racemase	NA	NA	NA	NA	NA
WP_187346120.1|1420306_1420993_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003688751.1|1422737_1423025_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_010011610.1|1423048_1423927_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	36.4	2.0e-42
WP_162816888.1|1424006_1424513_+|transposase	transposase	transposase	A0A1X9I6F6	Streptococcus_phage	57.0	3.2e-37
WP_114807131.1|1424541_1425681_-|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	33.3	5.1e-43
WP_114807132.1|1425782_1426091_+|transposase	transposase	transposase	A0A1X9I6F6	Streptococcus_phage	50.5	5.7e-21
>prophage 77
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1440366	1495928	2046196	transposase,tRNA	Paenibacillus_phage(13.33%)	46	NA	NA
WP_114807139.1|1440366_1441587_+|transposase	IS256 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	46.2	1.8e-94
WP_012391757.1|1442170_1444570_-	phosphoketolase family protein	NA	NA	NA	NA	NA
WP_035423620.1|1444775_1445573_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_114807140.1|1445579_1446308_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003681115.1|1446451_1446952_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_114807141.1|1446955_1447699_+	hypothetical protein	NA	NA	NA	NA	NA
WP_114807142.1|1447758_1449195_+	C69 family dipeptidase	NA	NA	NA	NA	NA
WP_114807143.1|1449549_1450362_+	sugar phosphate isomerase/epimerase	NA	NA	NA	NA	NA
WP_114807144.1|1450627_1451143_-	DUF1836 domain-containing protein	NA	NA	NA	NA	NA
WP_041807912.1|1451152_1451680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012391764.1|1451828_1453214_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_003681105.1|1453300_1453765_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A217ER62	Bacillus_phage	28.8	4.1e-07
WP_114807145.1|1454009_1454441_-	VOC family protein	NA	NA	NA	NA	NA
WP_046025560.1|1454633_1455803_+	MFS transporter	NA	NA	NA	NA	NA
WP_003685507.1|1456293_1457775_+	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	36.9	4.0e-72
WP_023467422.1|1457959_1459399_+	NADP-dependent phosphogluconate dehydrogenase	NA	M4SJX8	Cyanophage	29.4	2.4e-29
WP_003685511.1|1459653_1460127_-	universal stress protein	NA	NA	NA	NA	NA
WP_114806462.1|1460370_1461657_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	31.2	2.3e-47
WP_003685513.1|1461767_1462223_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_114807146.1|1462381_1463128_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	29.9	1.3e-15
WP_114807147.1|1463144_1464146_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_114807148.1|1464417_1466226_-	oligoendopeptidase F	NA	NA	NA	NA	NA
WP_014562721.1|1466228_1467521_-	cation:dicarboxylase symporter family transporter	NA	NA	NA	NA	NA
WP_003681090.1|1467768_1468440_+	membrane protein	NA	NA	NA	NA	NA
WP_114807149.1|1468844_1469913_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	33.6	2.2e-35
WP_114807150.1|1470095_1471775_+	D-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_114807151.1|1472358_1473018_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	43.3	2.4e-40
WP_114807152.1|1474825_1475371_+|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	44.1	3.0e-33
WP_111523563.1|1475653_1476088_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_111523565.1|1477986_1478697_-	VIT family protein	NA	NA	NA	NA	NA
WP_111523566.1|1479016_1479940_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	40.3	7.3e-48
WP_111523567.1|1479998_1480211_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_076640293.1|1480338_1480962_-	cation transporter	NA	NA	NA	NA	NA
WP_076640292.1|1480931_1481558_-	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	32.4	7.0e-18
WP_010625596.1|1482618_1483107_-	PAS domain-containing protein	NA	NA	NA	NA	NA
WP_111523568.1|1483176_1484100_-	ferrochelatase	NA	NA	NA	NA	NA
WP_111523569.1|1484096_1485476_-	MFS transporter	NA	NA	NA	NA	NA
WP_111523570.1|1486080_1487301_-|transposase	IS256 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	46.0	1.8e-94
WP_002817475.1|1487563_1487860_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003688746.1|1487878_1488043_-	DUF2933 domain-containing protein	NA	NA	NA	NA	NA
WP_114807153.1|1488095_1490291_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	30.3	1.1e-60
WP_111523572.1|1490541_1490973_-	CopY/TcrY family copper transport repressor	NA	NA	NA	NA	NA
WP_003685528.1|1491557_1492139_+	recombinase family protein	NA	M9Q1K0	Clostridium_phage	34.9	6.9e-20
WP_012391781.1|1492467_1493139_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.4	5.0e-30
WP_003685525.1|1493143_1494190_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_111523126.1|1494740_1495928_+|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
>prophage 78
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1506369	1516855	2046196		Lactococcus_phage(16.67%)	13	NA	NA
WP_114807154.1|1506369_1507320_+	hypothetical protein	NA	H9EFB5	Lactococcus_phage	24.5	4.5e-24
WP_031265526.1|1507325_1508114_+	tyrosine-protein phosphatase	NA	NA	NA	NA	NA
WP_003682203.1|1508132_1508645_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_003682205.1|1508657_1508882_+	hypothetical protein	NA	NA	NA	NA	NA
WP_111523577.1|1508997_1509732_-	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.7	4.2e-22
WP_015639612.1|1509733_1510423_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003685553.1|1510525_1511326_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003682214.1|1511464_1511791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015639613.1|1511892_1512831_+	hypothetical protein	NA	A0A1V0SBV6	Catovirus	31.8	7.5e-24
WP_003682220.1|1512832_1513315_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_003682221.1|1513531_1514326_+	nicotinamide mononucleotide transporter	NA	A0A0A7NTY4	Lactobacillus_phage	36.6	8.0e-27
WP_003685559.1|1514432_1514942_-	O-acetyl-ADP-ribose deacetylase	NA	A0A0K1L687	Scale_drop_disease_virus	50.0	1.9e-37
WP_114807155.1|1514950_1516855_-	M13 family peptidase	NA	E3T4I7	Cafeteria_roenbergensis_virus	29.8	2.6e-71
>prophage 79
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1519960	1521103	2046196		Bacillus_phage(100.0%)	1	NA	NA
WP_114807157.1|1519960_1521103_-	AAA family ATPase	NA	A0A141HRX4	Bacillus_phage	31.1	2.9e-22
>prophage 80
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1526291	1534433	2046196		Enterobacteria_phage(25.0%)	8	NA	NA
WP_111523582.1|1526291_1527239_-	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	24.4	2.5e-11
WP_114807160.1|1527668_1529732_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A0A7RUS8	Clostridium_phage	48.3	3.2e-27
WP_003682256.1|1529850_1530171_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003685587.1|1530353_1530812_-	arginine repressor	NA	NA	NA	NA	NA
WP_111523584.1|1530973_1531666_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.2	3.8e-33
WP_111523585.1|1531678_1532740_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_111523586.1|1532663_1533266_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003685594.1|1533422_1534433_-	zinc-dependent alcohol dehydrogenase family protein	NA	K7Z7U2	Megavirus	27.4	3.8e-13
>prophage 81
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1537736	1539542	2046196	tRNA	Tupanvirus(100.0%)	1	NA	NA
WP_015639633.1|1537736_1539542_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	33.8	6.4e-88
>prophage 82
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1545161	1547072	2046196		Phaeocystis_globosa_virus(100.0%)	1	NA	NA
WP_012391812.1|1545161_1547072_-	asparagine synthase (glutamine-hydrolyzing)	NA	R4TIC1	Phaeocystis_globosa_virus	28.2	1.4e-24
>prophage 83
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1560044	1577908	2046196		Bacillus_virus(28.57%)	13	NA	NA
WP_114807165.1|1560044_1561994_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	45.6	5.7e-143
WP_012390653.1|1562019_1564530_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	37.3	2.0e-111
WP_003682303.1|1564736_1565030_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_023465946.1|1565070_1565796_+	single-stranded DNA-binding protein	NA	A0A2D1GPB7	Lactobacillus_phage	66.4	5.6e-35
WP_003682305.1|1565834_1566071_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_003685631.1|1568227_1568680_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003682308.1|1568724_1570128_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	49.3	2.7e-110
WP_114807166.1|1571397_1571730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003685635.1|1572415_1573123_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.8	7.9e-42
WP_015638411.1|1573134_1574994_+	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	35.6	1.7e-35
WP_003682313.1|1574977_1576276_+	hypothetical protein	NA	NA	NA	NA	NA
WP_114807167.1|1576277_1577078_+	two-component system regulatory protein YycI	NA	NA	NA	NA	NA
WP_114807168.1|1577092_1577908_+	MBL fold metallo-hydrolase	NA	A0A2H4J3R0	uncultured_Caudovirales_phage	32.2	1.0e-32
>prophage 84
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1587415	1594645	2046196	protease	Paramecium_bursaria_Chlorella_virus(66.67%)	6	NA	NA
WP_114807173.1|1587415_1588393_-	choloylglycine hydrolase family protein	NA	A7IWP6	Paramecium_bursaria_Chlorella_virus	29.8	5.3e-20
WP_114807174.1|1588447_1589383_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003682328.1|1589685_1590678_-	D-2-hydroxyacid dehydrogenase	NA	M1HTA3	Paramecium_bursaria_Chlorella_virus	31.9	2.5e-38
WP_024500593.1|1590693_1591878_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_003685663.1|1592226_1592457_+	hypothetical protein	NA	NA	NA	NA	NA
WP_114807175.1|1592551_1594645_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	40.1	2.5e-120
>prophage 85
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1600630	1613131	2046196		Staphylococcus_phage(33.33%)	9	NA	NA
WP_114807176.1|1600630_1604644_+	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	20.9	6.7e-13
WP_003685671.1|1604643_1605507_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	46.4	5.6e-58
WP_114807177.1|1605744_1607370_+	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA	NA
WP_003682345.1|1607663_1608020_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	40.0	1.8e-15
WP_075667322.1|1608057_1609173_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023465701.1|1609165_1609897_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.2	8.2e-26
WP_069775908.1|1610035_1610590_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_114807178.1|1610670_1611645_-	GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	68.4	1.2e-133
WP_003685683.1|1611841_1613131_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	37.6	4.1e-73
>prophage 86
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1616512	1617139	2046196		Pandoravirus(100.0%)	1	NA	NA
WP_114807179.1|1616512_1617139_+	orotate phosphoribosyltransferase	NA	S4VS55	Pandoravirus	38.6	2.2e-35
>prophage 87
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1622769	1627526	2046196		Planktothrix_phage(50.0%)	4	NA	NA
WP_046949204.1|1622769_1623834_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.8	5.7e-28
WP_021350093.1|1623826_1624528_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_162816894.1|1624653_1625802_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_114807185.1|1626101_1627526_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	33.7	9.5e-71
>prophage 88
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1631575	1635862	2046196		Pseudomonas_phage(33.33%)	4	NA	NA
WP_069775913.1|1631575_1632802_-	D-alanyl-lipoteichoic acid biosynthesis protein DltB	NA	A0A125RNP0	Pseudomonas_phage	31.2	3.4e-24
WP_114807188.1|1632801_1634331_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9KZV5	Tupanvirus	25.8	5.3e-35
WP_003682395.1|1634345_1634477_-	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA	NA
WP_114807189.1|1634728_1635862_+	exonuclease SbcCD subunit D	NA	R4JGS2	Bacillus_phage	25.4	2.2e-09
>prophage 90
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1698682	1701605	2046196		Tetraselmis_virus(50.0%)	3	NA	NA
WP_021815546.1|1698682_1699168_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.2	2.4e-21
WP_114807216.1|1699151_1700291_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_114698779.1|1700309_1701605_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.7	6.3e-21
>prophage 91
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1707873	1717164	2046196		Prochlorococcus_phage(33.33%)	7	NA	NA
WP_114807221.1|1707873_1710099_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.6	6.3e-146
WP_054194046.1|1710074_1711538_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	4.1e-61
WP_114807222.1|1711537_1712575_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	M4QRQ6	Synechococcus_phage	39.5	2.7e-59
WP_023466051.1|1712583_1713165_+	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	32.4	6.1e-24
WP_114807223.1|1713166_1714702_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	46.2	1.3e-73
WP_114807224.1|1714975_1716229_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_003682507.1|1716468_1717164_+	2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA	A0A1X9IGJ2	Lactococcus_phage	30.5	4.0e-06
>prophage 92
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1720521	1723520	2046196		uncultured_virus(50.0%)	3	NA	NA
WP_003682512.1|1720521_1722453_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	37.6	2.7e-92
WP_111522990.1|1722564_1722999_+	hypothetical protein	NA	NA	NA	NA	NA
WP_114807226.1|1723043_1723520_-	nucleoside 2-deoxyribosyltransferase	NA	A0A2P0ZL88	Lactobacillus_phage	35.2	1.0e-16
>prophage 93
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1736227	1738009	2046196	transposase	Lactobacillus_phage(50.0%)	2	NA	NA
WP_012390701.1|1736227_1736680_-|transposase	IS200/IS605 family transposase	transposase	A0A0P0IQC6	Lactobacillus_phage	51.5	2.8e-32
WP_114807229.1|1736758_1738009_+|transposase	transposase	transposase	A0A286QQE5	Streptococcus_phage	36.8	1.3e-55
>prophage 94
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1745368	1748924	2046196		Organic_Lake_phycodnavirus(33.33%)	3	NA	NA
WP_031265112.1|1745368_1746130_+	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	27.8	1.4e-12
WP_114807234.1|1746488_1747793_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	27.2	1.1e-44
WP_014562113.1|1748084_1748924_+	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	62.8	1.4e-98
>prophage 95
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1754727	1755699	2046196		Catovirus(100.0%)	1	NA	NA
WP_003686397.1|1754727_1755699_+	2-hydroxyacid dehydrogenase family protein	NA	A0A1V0SBV6	Catovirus	33.9	7.0e-33
>prophage 96
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1760350	1767767	2046196	transposase	Acanthocystis_turfacea_Chlorella_virus(20.0%)	6	NA	NA
WP_012390781.1|1760350_1760998_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	27.1	1.8e-16
WP_003683956.1|1761007_1761739_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_003683957.1|1761749_1762064_+	MazG-like family protein	NA	A0A2R3ZXQ3	Staphylococcus_phage	40.4	6.6e-17
WP_114807235.1|1763287_1765813_-	M1 family metallopeptidase	NA	A0A0P0IY26	Acinetobacter_phage	26.7	5.4e-69
WP_114807236.1|1765987_1766443_-|transposase	IS200/IS605 family transposase	transposase	A0A0P0IQC6	Lactobacillus_phage	50.0	2.8e-32
WP_114807237.1|1766516_1767767_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A286QQE5	Streptococcus_phage	37.3	5.3e-57
>prophage 97
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1780100	1785189	2046196	tRNA	Bacillus_phage(33.33%)	4	NA	NA
WP_111523013.1|1780100_1780799_+	NAD-dependent protein deacylase	NA	A0A068EPD4	Bacillus_phage	31.7	1.4e-19
WP_003683974.1|1781014_1782190_+	MFS transporter	NA	NA	NA	NA	NA
WP_003686431.1|1782245_1783088_+	DUF72 domain-containing protein	NA	A0A1V0CNL1	Kaumoebavirus	29.8	1.6e-09
WP_162816892.1|1783188_1785189_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	36.2	5.4e-88
>prophage 98
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1789633	1800742	2046196		Tupanvirus(40.0%)	11	NA	NA
WP_031274189.1|1789633_1790299_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	27.6	2.6e-15
WP_003683987.1|1790298_1791093_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_003683990.1|1791317_1792154_+	pur operon repressor	NA	NA	NA	NA	NA
WP_114807245.1|1792169_1793537_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A0N7G7P8	Chrysochromulina_ericina_virus	34.4	3.4e-33
WP_003683994.1|1793612_1794599_+	ribose-phosphate diphosphokinase	NA	A0A2K9L2G2	Tupanvirus	33.6	1.5e-38
WP_003683996.1|1794708_1795437_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003683998.1|1795612_1796434_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_003686449.1|1796445_1797801_-	HD domain-containing protein	NA	A0A291ATA1	Pandoravirus	32.1	1.4e-26
WP_003686451.1|1797915_1798341_+	DUF1934 domain-containing protein	NA	NA	NA	NA	NA
WP_003684002.1|1798386_1798974_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
WP_003686454.1|1799140_1800742_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	50.3	4.6e-146
>prophage 99
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1804679	1811202	2046196	protease	Lactococcus_phage(25.0%)	7	NA	NA
WP_003684020.1|1804679_1805237_+	LemA family protein	NA	A0A1X9IGG1	Lactococcus_phage	33.8	2.7e-13
WP_012390799.1|1805247_1806147_+|protease	zinc metalloprotease HtpX	protease	NA	NA	NA	NA
WP_003686468.1|1806321_1807701_+	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
WP_015638558.1|1807871_1809350_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	39.7	7.6e-71
WP_003684028.1|1809353_1809713_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003684030.1|1809715_1810837_+	alanine racemase	NA	A0A0P0YM39	Yellowstone_lake_mimivirus	28.9	3.2e-29
WP_015638559.1|1810848_1811202_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1S5RCS0	Lactobacillus_phage	40.0	1.0e-13
>prophage 100
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1817626	1825350	2046196	tRNA,protease	Tupanvirus(50.0%)	6	NA	NA
WP_114807248.1|1817626_1818976_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	R4TVK3	Phaeocystis_globosa_virus	26.5	8.6e-13
WP_003684053.1|1818992_1819541_+	hypoxanthine phosphoribosyltransferase	NA	A0A2K9L634	Tupanvirus	30.8	1.0e-12
WP_003684055.1|1819624_1821793_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	A0A0P0CCN8	Ostreococcus_mediterraneus_virus	48.8	5.6e-107
WP_003686492.1|1821869_1822751_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_003684059.1|1822839_1823841_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003686497.1|1823856_1825350_+|tRNA	lysine--tRNA ligase	tRNA	A0A2K9L3L6	Tupanvirus	41.4	1.6e-89
>prophage 101
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1837138	1838635	2046196		Acinetobacter_phage(100.0%)	1	NA	NA
WP_012390819.1|1837138_1838635_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.9	2.1e-68
>prophage 102
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1842194	1844502	2046196		Bacillus_virus(100.0%)	2	NA	NA
WP_014562146.1|1842194_1843655_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.8	2.2e-110
WP_004562721.1|1843671_1844502_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	56.2	1.8e-77
>prophage 103
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1848896	1850777	2046196		Herpes_simplex_virus(100.0%)	1	NA	NA
WP_114807252.1|1848896_1850777_+	beta-galactosidase	NA	L0N6M2	Herpes_simplex_virus	33.0	1.1e-95
>prophage 104
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1854983	1858775	2046196		Phaeocystis_globosa_virus(50.0%)	5	NA	NA
WP_004562729.1|1854983_1856321_-	C1 family peptidase	NA	R4TV59	Phaeocystis_globosa_virus	35.9	8.9e-71
WP_004563340.1|1856384_1856999_-	sugar O-acetyltransferase	NA	NA	NA	NA	NA
WP_014562151.1|1857026_1857713_-	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA	NA
WP_004562732.1|1857724_1858036_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004563338.1|1858235_1858775_+	dUTP diphosphatase	NA	J9PV85	Bacillus_phage	47.8	8.9e-38
>prophage 105
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1863878	1865297	2046196	tRNA	Moumouvirus(100.0%)	1	NA	NA
WP_004562738.1|1863878_1865297_+|tRNA	cysteine--tRNA ligase	tRNA	M1PG92	Moumouvirus	31.1	2.7e-49
>prophage 106
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1875354	1878826	2046196		Bacillus_phage(50.0%)	2	NA	NA
WP_114807256.1|1875354_1877085_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.3	1.6e-27
WP_004562753.1|1877074_1878826_+	thiol reductant ABC exporter subunit CydC	NA	A0A076FI99	Aureococcus_anophage	31.3	2.2e-21
>prophage 107
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1883901	1894627	2046196		Enterococcus_phage(37.5%)	13	NA	NA
WP_111523038.1|1883901_1884903_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	63.0	2.3e-116
WP_111523039.1|1884964_1887136_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	59.1	2.5e-248
WP_004563324.1|1887235_1887457_-	glutaredoxin-like protein NrdH	NA	X2KRY7	Enterococcus_phage	54.7	3.2e-10
WP_004562759.1|1887713_1888238_+	nucleoside deaminase	NA	A0A2H4PQS8	Staphylococcus_phage	34.4	1.0e-06
WP_004563323.1|1888493_1890185_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.6	2.3e-55
WP_004562761.1|1890207_1890516_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_004562762.1|1890531_1891131_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_004562763.1|1891132_1891381_+	YaaL family protein	NA	NA	NA	NA	NA
WP_004562764.1|1891400_1892045_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	53.1	1.6e-54
WP_004563322.1|1892057_1892378_+	cyclic-di-AMP receptor	NA	NA	NA	NA	NA
WP_004562766.1|1892395_1893436_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	31.9	2.8e-27
WP_111523041.1|1893428_1893764_+	DNA replication initiation control protein YabA	NA	NA	NA	NA	NA
WP_004562768.1|1893766_1894627_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	52.6	1.2e-73
>prophage 108
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1900318	1901314	2046196		Hokovirus(100.0%)	1	NA	NA
WP_003684257.1|1900318_1901314_+	UDP-glucose 4-epimerase GalE	NA	A0A1V0SG19	Hokovirus	34.3	1.1e-41
>prophage 109
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1907793	1912891	2046196	tRNA	uncultured_virus(50.0%)	5	NA	NA
WP_111523047.1|1907793_1908915_-	vitamin B12 independent methionine synthase	NA	A0A218MNE0	uncultured_virus	47.9	3.0e-88
WP_004563314.1|1909378_1910497_+	aminotransferase	NA	NA	NA	NA	NA
WP_004563313.1|1910567_1911299_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_046025854.1|1911288_1911888_+	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_003682528.1|1911856_1912891_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	40.5	2.5e-60
>prophage 110
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1917017	1917749	2046196		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
WP_003682544.1|1917017_1917749_+	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.5	4.8e-18
>prophage 111
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1928470	1935077	2046196		uncultured_virus(50.0%)	6	NA	NA
WP_003682569.1|1928470_1928752_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	43.0	5.2e-13
WP_003682571.1|1928776_1930408_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	1.1e-158
WP_114807264.1|1930548_1932387_+	APC family permease	NA	NA	NA	NA	NA
WP_003682576.1|1932593_1932860_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004563297.1|1933058_1933697_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	43.0	7.8e-41
WP_114807265.1|1933760_1935077_+	DNA/RNA helicase	NA	A0A1X9I5S6	Streptococcus_phage	42.9	2.7e-80
>prophage 112
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1939028	1940144	2046196		Mycobacterium_phage(100.0%)	1	NA	NA
WP_181407308.1|1939028_1940144_+	peptide chain release factor 2	NA	B5LLF2	Mycobacterium_phage	35.6	1.3e-06
>prophage 113
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1943770	1944682	2046196		Bacillus_phage(100.0%)	1	NA	NA
WP_003682593.1|1943770_1944682_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	46.1	3.9e-70
>prophage 114
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1948845	1951565	2046196		Bacillus_virus(50.0%)	3	NA	NA
WP_023465863.1|1948845_1949787_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	48.4	9.1e-78
WP_012390862.1|1949799_1950618_+	homoserine O-succinyltransferase	NA	NA	NA	NA	NA
WP_004563285.1|1950638_1951565_+	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	58.0	2.2e-100
>prophage 115
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1954715	1956440	2046196		Streptococcus_phage(100.0%)	1	NA	NA
WP_049184604.1|1954715_1956440_+	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	60.2	2.3e-196
>prophage 116
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1959650	1970207	2046196	transposase	Streptococcus_phage(42.86%)	9	NA	NA
WP_015638635.1|1959650_1962512_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	54.8	8.9e-302
WP_012390871.1|1962601_1963687_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004563277.1|1963905_1964775_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	30.8	8.3e-09
WP_003682620.1|1964796_1965774_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	54.0	2.7e-93
WP_015638637.1|1965791_1966730_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	36.8	2.3e-49
WP_111523065.1|1966850_1967498_-	thiaminase II	NA	NA	NA	NA	NA
WP_114807270.1|1967688_1968939_-|transposase	transposase	transposase	A0A286QQE5	Streptococcus_phage	37.0	4.5e-56
WP_003684311.1|1969017_1969470_+|transposase	IS200/IS605 family transposase	transposase	A0A0P0IQC6	Lactobacillus_phage	51.5	4.7e-32
WP_003682627.1|1969616_1970207_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	56.8	3.6e-56
>prophage 117
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1975203	1976526	2046196		Streptococcus_phage(100.0%)	1	NA	NA
WP_012390876.1|1975203_1976526_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	70.3	2.0e-171
>prophage 118
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1980108	1993269	2046196	tRNA	Lactococcus_phage(16.67%)	13	NA	NA
WP_111523068.1|1980108_1982502_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.1	6.5e-88
WP_003682651.1|1982522_1982996_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	56.8	4.0e-42
WP_024500726.1|1983023_1983605_-	hypothetical protein	NA	NA	NA	NA	NA
WP_111523069.1|1983745_1984435_+	uracil-DNA glycosylase	NA	A0A0B5IW78	Pandoravirus	45.1	6.7e-46
WP_003682658.1|1984468_1985443_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_003682659.1|1985451_1985904_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_004563263.1|1985903_1986419_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_004563262.1|1986548_1987088_-	exonuclease	NA	A0A1S5SFA9	Streptococcus_phage	37.4	4.8e-23
WP_003682662.1|1987215_1988112_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
WP_014562189.1|1988123_1988969_+	TIGR00159 family protein	NA	NA	NA	NA	NA
WP_023465582.1|1988958_1989837_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003682665.1|1989876_1991235_+	phosphoglucosamine mutase	NA	A0A127AWJ1	Bacillus_phage	26.9	3.6e-19
WP_114807271.1|1991448_1993269_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	Q76DQ7	Chlorella_virus	36.4	6.9e-90
>prophage 119
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	1996875	2003796	2046196		Enterococcus_phage(25.0%)	7	NA	NA
WP_080637833.1|1996875_1997505_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A249XZV3	Enterococcus_phage	52.3	7.3e-23
WP_003682672.1|1997902_1998931_-	putative sulfate exporter family transporter	NA	NA	NA	NA	NA
WP_012390889.1|1999051_1999957_+	LysR family transcriptional regulator	NA	A0A2H4J8I9	uncultured_Caudovirales_phage	41.2	7.5e-05
WP_057194876.1|2000053_2001016_-	mannose-6-phosphate isomerase, class I	NA	NA	NA	NA	NA
WP_114807273.1|2001102_2001942_-	DegV family protein	NA	A0A1X9I5J4	Streptococcus_phage	39.8	5.1e-48
WP_003682679.1|2002104_2002620_+	DUF1836 domain-containing protein	NA	NA	NA	NA	NA
WP_114807274.1|2002854_2003796_-	Dyp-type peroxidase	NA	A0A0B5JDC7	Pandoravirus	31.1	2.4e-09
>prophage 120
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	2006967	2015355	2046196	transposase	Paenibacillus_phage(33.33%)	7	NA	NA
WP_114806512.1|2006967_2008188_+|transposase	IS256 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	46.2	2.4e-94
WP_114807275.1|2008365_2008716_+	DUF956 family protein	NA	NA	NA	NA	NA
WP_114807276.1|2009334_2010057_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_114807277.1|2010056_2011559_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	34.6	2.3e-35
WP_075667224.1|2011761_2012622_+	sugar transporter	NA	NA	NA	NA	NA
WP_069776045.1|2012722_2013892_+	ROK family protein	NA	NA	NA	NA	NA
WP_114807278.1|2013975_2015355_-	sugar porter family MFS transporter	NA	O13311	Aichi_virus	28.4	9.3e-31
>prophage 121
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	2023672	2025337	2046196		Tupanvirus(100.0%)	1	NA	NA
WP_114807282.1|2023672_2025337_+	FAD-dependent oxidoreductase	NA	A0A2K9L4X0	Tupanvirus	37.7	1.8e-52
>prophage 122
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	2028426	2029275	2046196		Staphylococcus_phage(100.0%)	1	NA	NA
WP_003682703.1|2028426_2029275_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	39.1	3.6e-49
>prophage 123
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	2033229	2036797	2046196		Bacillus_phage(100.0%)	2	NA	NA
WP_014562205.1|2033229_2034981_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	2.0e-41
WP_114807286.1|2034955_2036797_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	31.3	1.4e-53
>prophage 124
NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2046196	2042368	2045941	2046196		Cronobacter_phage(50.0%)	4	NA	NA
WP_012390912.1|2042368_2042959_+	thymidine kinase	NA	A0A060AH87	Cronobacter_phage	55.1	4.7e-48
WP_012390913.1|2042964_2044047_+	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_003682732.1|2044039_2044891_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_012390915.1|2044909_2045941_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	38.4	1.2e-51
