assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003346795.1_ASM334679v1	NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	1	288040-288147	1	CRISPRCasFinder	no		cas3,DEDDh,cas14j,cas9,cas1,cas2,csn2,csa3,WYL,DinG,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GTGTACAAGTTAAGTAGAGACTCTGATTTAGT	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas14j,cas9,cas1,cas2,csn2,csa3,WYL,DinG,cas6e,cas5,cas7,cse2gr11,cas8e	NA|106aa|up_6|NZ_CP031195.1_279121_279439_+,NA|122aa|down_4|NZ_CP031195.1_292661_293027_-	NA|565aa|up_9|NZ_CP031195.1_274854_276549_-	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins	NA|329aa|up_8|NZ_CP031195.1_276706_277693_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|431aa|up_7|NZ_CP031195.1_277848_279141_+	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V	NA|106aa|up_6|NZ_CP031195.1_279121_279439_+	NA	NA|391aa|up_5|NZ_CP031195.1_279591_280764_+	cd08188, PDDH, 1,3-Propanediol (1,3-PD) dehydrogenase	NA|321aa|up_4|NZ_CP031195.1_282410_283373_+	COG1893, ApbA, Ketopantoate reductase [Coenzyme metabolism]	NA|118aa|up_3|NZ_CP031195.1_283764_284118_-	pfam06993, DUF1304, Protein of unknown function (DUF1304)	NA|204aa|up_2|NZ_CP031195.1_284130_284742_-	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only]	NA|443aa|up_1|NZ_CP031195.1_284916_286245_-	PRK02991, PRK02991, D-serine dehydratase; Provisional	NA|467aa|up_0|NZ_CP031195.1_286534_287935_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|96aa|down_0|NZ_CP031195.1_288180_288468_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|293aa|down_1|NZ_CP031195.1_288491_289370_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|40aa|down_2|NZ_CP031195.1_289426_289546_+	pfam13333, rve_2, Integrase core domain	NA|756aa|down_3|NZ_CP031195.1_289608_291876_-	COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]	NA|122aa|down_4|NZ_CP031195.1_292661_293027_-	NA	NA|349aa|down_5|NZ_CP031195.1_293152_294199_+	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|196aa|down_6|NZ_CP031195.1_294209_294797_+	PRK14162, PRK14162, heat shock protein GrpE; Provisional	NA|619aa|down_7|NZ_CP031195.1_294834_296691_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|387aa|down_8|NZ_CP031195.1_296802_297963_+	PRK14276, PRK14276, chaperone protein DnaJ; Provisional	NA|56aa|down_9|NZ_CP031195.1_298944_299112_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional
GCF_003346795.1_ASM334679v1	NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	2	345794-347347	2,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas14j,cas9,cas1,cas2,csn2	cas3,DEDDh,cas14j,cas9,cas1,cas2,csn2,csa3,WYL,DinG,cas6e,cas5,cas7,cse2gr11,cas8e	Type II-C,Type II-A,Type II-B	GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGCAC,GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGCAC,GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGCAC,GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGCAC	36,36,36,36	1	8	346028-346057|346028-346057|346028-346057|346028-346057|346028-346057|346028-346057|346028-346057|346028-346057	NZ_CP031195.1_288461-288490|NZ_CP031195.1_467319-467348|NZ_CP031195.1_782727-782756|NZ_CP031195.1_825621-825592|NZ_CP031195.1_1019852-1019823|NZ_CP031195.1_1091780-1091809|NZ_CP031195.1_1308363-1308334|NZ_CP031195.1_1423018-1423047	NA:NA:NA:NA	23,23,20,20	23	TypeII-C,TypeII-A,TypeII-B,TypeV	cas3,DEDDh,cas14j,cas9,cas1,cas2,csn2,csa3,WYL,DinG,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|297aa|down_6|NZ_CP031195.1_354368_355259_+	NA|148aa|up_9|NZ_CP031195.1_333174_333618_+	PRK02833, PRK02833, phosphate-starvation-inducible protein PsiE; Provisional	NA|271aa|up_8|NZ_CP031195.1_333632_334445_+	cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1	NA|214aa|up_7|NZ_CP031195.1_334506_335148_-	PRK00043, thiE, thiamine phosphate synthase	NA|266aa|up_6|NZ_CP031195.1_335312_336110_-	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|255aa|up_5|NZ_CP031195.1_336132_336897_-	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|656aa|up_4|NZ_CP031195.1_337342_339310_+	TIGR03766, hypothetical_protein_lp_2141, conserved hypothetical integral membrane protein	cas9|1379aa|up_3|NZ_CP031195.1_339566_343703_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|302aa|up_2|NZ_CP031195.1_343908_344814_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|102aa|up_1|NZ_CP031195.1_344791_345097_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|224aa|up_0|NZ_CP031195.1_345093_345765_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|144aa|down_0|NZ_CP031195.1_347620_348052_+	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|131aa|down_1|NZ_CP031195.1_348067_348460_+	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|77aa|down_2|NZ_CP031195.1_348584_348815_-	COG2336, MazE, Growth regulator [Signal transduction mechanisms]	NA|425aa|down_3|NZ_CP031195.1_348893_350168_-	PRK09528, lacY, galactoside permease; Reviewed	NA|466aa|down_4|NZ_CP031195.1_350182_351580_-	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]	NA|328aa|down_5|NZ_CP031195.1_351853_352837_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|297aa|down_6|NZ_CP031195.1_354368_355259_+	NA	NA|318aa|down_7|NZ_CP031195.1_356627_357581_-	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|152aa|down_8|NZ_CP031195.1_357912_358368_-	pfam01797, Y1_Tnp, Transposase IS200 like	cas14j|417aa|down_9|NZ_CP031195.1_358441_359692_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_003346795.1_ASM334679v1	NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	3	826472-828695	3,3,2,4	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas14j,DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,DEDDh,cas14j,cas9,cas1,cas2,csn2,csa3,WYL,DinG,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	GGATCACCCCCATATACATGGGGAGCAC,GGATCACCCCCATATACATGGGGAGCAC,GGATCACCCCCATATACATGGGGAGCAC,GGATCACCCCCATATACATGGGGAGCAC	28,28,28,28	0	0	NA	NA	NA:NA:NA:NA	34,35,36,34	36	TypeI-E,TypeV	cas3,DEDDh,cas14j,cas9,cas1,cas2,csn2,csa3,WYL,DinG,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|152aa|up_9|NZ_CP031195.1_813769_814225_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|458aa|up_8|NZ_CP031195.1_814275_815649_-	COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]	NA|269aa|up_7|NZ_CP031195.1_815777_816584_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|306aa|up_6|NZ_CP031195.1_816815_817733_-	PRK07259, PRK07259, dihydroorotate dehydrogenase	NA|1060aa|up_5|NZ_CP031195.1_817745_820925_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|361aa|up_4|NZ_CP031195.1_820924_822007_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|430aa|up_3|NZ_CP031195.1_822008_823298_-	PRK09357, pyrC, dihydroorotase; Validated	NA|322aa|up_2|NZ_CP031195.1_823297_824263_-	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit	NA|293aa|up_1|NZ_CP031195.1_824711_825590_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|96aa|up_0|NZ_CP031195.1_825613_825901_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|429aa|down_0|NZ_CP031195.1_828836_830123_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	DEDDh|293aa|down_1|NZ_CP031195.1_831181_832060_-	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	cas1|313aa|down_2|NZ_CP031195.1_832063_833002_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|219aa|down_3|NZ_CP031195.1_832998_833655_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|236aa|down_4|NZ_CP031195.1_833667_834375_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|367aa|down_5|NZ_CP031195.1_834355_835456_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|195aa|down_6|NZ_CP031195.1_835464_836049_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|553aa|down_7|NZ_CP031195.1_836065_837724_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|914aa|down_8|NZ_CP031195.1_837704_840446_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|120aa|down_9|NZ_CP031195.1_840676_841036_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCF_003346795.1_ASM334679v1	NZ_CP031195	Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome	4	830147-831152	4,3,5	CRISPRCasFinder,CRT,PILER-CR	no	cas14j,DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,DEDDh,cas14j,cas9,cas1,cas2,csn2,csa3,WYL,DinG,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	GGATCACCCCCATATACATGGGGAGCAC,GGATCACCCCCATATACATGGGGAGCAC,GGATCACCCCCATATACATGGGGAGCAC	28,28,28	0	0	NA	NA	NA:NA:NA	16,16,15	16	TypeI-E,TypeV	cas3,DEDDh,cas14j,cas9,cas1,cas2,csn2,csa3,WYL,DinG,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|458aa|up_9|NZ_CP031195.1_814275_815649_-	COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]	NA|269aa|up_8|NZ_CP031195.1_815777_816584_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|306aa|up_7|NZ_CP031195.1_816815_817733_-	PRK07259, PRK07259, dihydroorotate dehydrogenase	NA|1060aa|up_6|NZ_CP031195.1_817745_820925_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|361aa|up_5|NZ_CP031195.1_820924_822007_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|430aa|up_4|NZ_CP031195.1_822008_823298_-	PRK09357, pyrC, dihydroorotase; Validated	NA|322aa|up_3|NZ_CP031195.1_823297_824263_-	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit	NA|293aa|up_2|NZ_CP031195.1_824711_825590_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|96aa|up_1|NZ_CP031195.1_825613_825901_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|429aa|up_0|NZ_CP031195.1_828836_830123_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	DEDDh|293aa|down_0|NZ_CP031195.1_831181_832060_-	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	cas1|313aa|down_1|NZ_CP031195.1_832063_833002_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|219aa|down_2|NZ_CP031195.1_832998_833655_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|236aa|down_3|NZ_CP031195.1_833667_834375_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|367aa|down_4|NZ_CP031195.1_834355_835456_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|195aa|down_5|NZ_CP031195.1_835464_836049_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|553aa|down_6|NZ_CP031195.1_836065_837724_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|914aa|down_7|NZ_CP031195.1_837704_840446_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|120aa|down_8|NZ_CP031195.1_840676_841036_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|476aa|down_9|NZ_CP031195.1_841156_842584_-	TIGR00909, putative_amino_acid_transporter, amino acid transporter
