assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003346835.1_ASM334683v1	NZ_CP031215	Escherichia coli strain Es_ST80_L1_NDM_10_2017 chromosome, complete genome	1	119459-119572	1	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL,csa3	Orphan	TGCCGGATGCGCTTCGCTTATCCGGCCTACAAA	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL,csa3	NA,NA	NA|74aa|up_9|NZ_CP031215.1_109028_109250_-	PRK09956, PRK09956, ISNCY family transposase	NA|304aa|up_8|NZ_CP031215.1_109262_110174_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP031215.1_110366_111557_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP031215.1_111553_112813_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP031215.1_112802_114431_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP031215.1_114703_116062_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP031215.1_116066_117143_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP031215.1_117345_117996_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP031215.1_118049_118304_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP031215.1_118303_119434_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP031215.1_119623_121909_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1253aa|down_1|NZ_CP031215.1_122591_126350_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP031215.1_126489_127212_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP031215.1_127358_129986_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP031215.1_130134_131823_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP031215.1_131819_132443_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP031215.1_132586_136981_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP031215.1_136981_138631_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP031215.1_138635_139412_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP031215.1_139485_140670_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_003346835.1_ASM334683v1	NZ_CP031215	Escherichia coli strain Es_ST80_L1_NDM_10_2017 chromosome, complete genome	2	866838-866961	2	CRISPRCasFinder	no	DEDDh	DEDDh,RT,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL,csa3	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL,csa3	NA,NA|30aa|down_7|NZ_CP031215.1_875859_875949_+	NA|335aa|up_9|NZ_CP031215.1_854678_855683_+	PRK10190, PRK10190, L,D-transpeptidase; Provisional	NA|79aa|up_8|NZ_CP031215.1_855746_855983_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|70aa|up_7|NZ_CP031215.1_858261_858471_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_6|NZ_CP031215.1_858926_859553_+	PRK09898, PRK09898, ferredoxin-like protein	NA|213aa|up_5|NZ_CP031215.1_861687_862326_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP031215.1_862389_863058_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP031215.1_863054_863840_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP031215.1_863843_864656_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP031215.1_864667_866272_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP031215.1_866397_866703_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP031215.1_867275_868532_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP031215.1_868572_869946_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP031215.1_870160_870802_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP031215.1_870841_871990_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP031215.1_872281_873493_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP031215.1_873605_874538_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP031215.1_874534_875560_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP031215.1_875859_875949_+	NA	NA|390aa|down_8|NZ_CP031215.1_876114_877284_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP031215.1_877429_878011_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_003346835.1_ASM334683v1	NZ_CP031215	Escherichia coli strain Es_ST80_L1_NDM_10_2017 chromosome, complete genome	3	1600964-1601055	3	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL,csa3	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL,csa3	NA|70aa|up_9|NZ_CP031215.1_1590214_1590424_-,NA	NA|70aa|up_9|NZ_CP031215.1_1590214_1590424_-	NA	NA|1321aa|up_8|NZ_CP031215.1_1590478_1594441_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP031215.1_1594480_1595119_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP031215.1_1595406_1596498_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP031215.1_1596497_1597190_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP031215.1_1597201_1597588_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP031215.1_1597595_1598396_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP031215.1_1598405_1598996_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP031215.1_1599006_1599501_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP031215.1_1599521_1600850_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP031215.1_1601478_1602075_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP031215.1_1602095_1602323_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP031215.1_1602360_1603602_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP031215.1_1604135_1605056_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP031215.1_1605055_1605361_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP031215.1_1605514_1606114_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP031215.1_1606110_1608657_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP031215.1_1608656_1609829_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP031215.1_1609958_1610651_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP031215.1_1610623_1611652_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_003346835.1_ASM334683v1	NZ_CP031215	Escherichia coli strain Es_ST80_L1_NDM_10_2017 chromosome, complete genome	4	1722473-1722620	4,1	CRISPRCasFinder,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	DEDDh,RT,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL,csa3	Type I-F	TTTCTAAGCTGCCTGTACGGCAGTGAAC,GCGTTTCTAAGCTGCCTGTACGGCAGTGAAC	28,31	0	0	NA	NA	I-F:I-F	2,2	2	TypeI-F	DEDDh,RT,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL,csa3	NA,NA	NA|431aa|up_9|NZ_CP031215.1_1707738_1709031_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP031215.1_1709121_1710465_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP031215.1_1710475_1711087_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1369aa|up_6|NZ_CP031215.1_1711256_1715363_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP031215.1_1715497_1715992_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP031215.1_1716534_1717500_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP031215.1_1717622_1719389_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP031215.1_1719389_1721111_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP031215.1_1721152_1721857_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP031215.1_1722141_1722360_+	PRK00276, infA, translation initiation factor IF-1; Validated	cas6f|185aa|down_0|NZ_CP031215.1_1723160_1723715_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|334aa|down_1|NZ_CP031215.1_1723725_1724727_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|308aa|down_2|NZ_CP031215.1_1724737_1725661_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|436aa|down_3|NZ_CP031215.1_1725657_1726965_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3f|1078aa|down_4|NZ_CP031215.1_1727294_1730528_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|328aa|down_5|NZ_CP031215.1_1730524_1731508_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|759aa|down_6|NZ_CP031215.1_1732100_1734377_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_7|NZ_CP031215.1_1734407_1734728_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_8|NZ_CP031215.1_1735050_1735275_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_9|NZ_CP031215.1_1735347_1737294_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB
GCF_003346835.1_ASM334683v1	NZ_CP031215	Escherichia coli strain Es_ST80_L1_NDM_10_2017 chromosome, complete genome	5	1731681-1731890	5,1,2	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	DEDDh,RT,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL,csa3	Type I-F	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAACT,TTTCTAAGCTGCCTGTACGGCAGTGAACTT	28,29,30	0	0	NA	NA	I-F:I-F:I-F	3,3,2	3	TypeI-F	DEDDh,RT,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL,csa3	NA,NA	NA|589aa|up_9|NZ_CP031215.1_1717622_1719389_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_8|NZ_CP031215.1_1719389_1721111_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_7|NZ_CP031215.1_1721152_1721857_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_6|NZ_CP031215.1_1722141_1722360_+	PRK00276, infA, translation initiation factor IF-1; Validated	cas6f|185aa|up_5|NZ_CP031215.1_1723160_1723715_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|334aa|up_4|NZ_CP031215.1_1723725_1724727_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|308aa|up_3|NZ_CP031215.1_1724737_1725661_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|436aa|up_2|NZ_CP031215.1_1725657_1726965_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3f|1078aa|up_1|NZ_CP031215.1_1727294_1730528_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|328aa|up_0|NZ_CP031215.1_1730524_1731508_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|759aa|down_0|NZ_CP031215.1_1732100_1734377_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP031215.1_1734407_1734728_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP031215.1_1735050_1735275_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP031215.1_1735347_1737294_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP031215.1_1737290_1738406_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP031215.1_1738556_1739513_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP031215.1_1739509_1741168_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP031215.1_1741593_1742289_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP031215.1_1742609_1743509_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP031215.1_1743652_1745305_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_003346835.1_ASM334683v1	NZ_CP031215	Escherichia coli strain Es_ST80_L1_NDM_10_2017 chromosome, complete genome	6	2660896-2661028	3	PILER-CR	no		DEDDh,RT,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL,csa3	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	DEDDh,RT,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL,csa3	NA,NA	NA|105aa|up_9|NZ_CP031215.1_2652267_2652582_-	pfam01845, CcdB, CcdB protein	NA|78aa|up_8|NZ_CP031215.1_2652584_2652818_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP031215.1_2652903_2653383_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP031215.1_2653574_2655437_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP031215.1_2655429_2655960_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP031215.1_2656067_2657399_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP031215.1_2657457_2657745_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP031215.1_2657741_2659028_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP031215.1_2659078_2660020_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP031215.1_2660034_2660805_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP031215.1_2661277_2662792_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP031215.1_2662822_2663965_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP031215.1_2664092_2665310_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP031215.1_2665382_2666936_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP031215.1_2667044_2667830_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP031215.1_2667835_2668426_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP031215.1_2668544_2668940_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP031215.1_2669200_2672422_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP031215.1_2672439_2673588_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP031215.1_2674043_2674865_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
