The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	0	4454	2109726		Temperate_phage(50.0%)	3	NA	NA
WP_001274094.1|846_3360_-	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
WP_000940706.1|3505_3793_-	hypothetical protein	NA	Q938I9	Temperate_phage	47.8	1.2e-12
WP_001235282.1|3803_4454_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SE00	Indivirus	26.8	1.4e-08
>prophage 2
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	8376	17275	2109726		Streptococcus_phage(40.0%)	9	NA	NA
WP_000446532.1|8376_9273_-	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	34.8	9.7e-29
WP_000802387.1|9273_10443_-	DNA helicase	NA	C5J987	Streptococcus_phage	30.9	7.5e-05
WP_001203672.1|10443_10917_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_000119151.1|11056_11422_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000055451.1|11426_12122_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.4	6.8e-14
WP_000498745.1|12138_12906_+	membrane protein	NA	NA	NA	NA	NA
WP_114865800.1|13258_14458_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000895287.1|14454_15348_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.6	2.8e-20
WP_000076185.1|16657_17275_+	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	38.2	8.7e-29
>prophage 3
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	28228	30208	2109726		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_050204892.1|28228_30208_-	Stk1 family PASTA domain-containing Ser/Thr kinase	NA	M1HGF9	Acanthocystis_turfacea_Chlorella_virus	35.1	1.1e-19
>prophage 4
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	36014	36641	2109726		Abalone_herpesvirus(100.0%)	1	NA	NA
WP_000775037.1|36014_36641_-	guanylate kinase	NA	K4JYM5	Abalone_herpesvirus	33.3	3.4e-20
>prophage 5
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	60176	61082	2109726		Catovirus(100.0%)	1	NA	NA
WP_001292327.1|60176_61082_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	35.2	2.7e-10
>prophage 6
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	70044	72129	2109726		Catovirus(100.0%)	1	NA	NA
WP_000341093.1|70044_72129_-	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	35.6	2.8e-10
>prophage 7
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	78040	83330	2109726		Streptomyces_phage(33.33%)	4	NA	NA
WP_001029580.1|78040_78355_+	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	47.2	6.6e-17
WP_000828659.1|78659_79193_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	67.9	1.0e-25
WP_000714849.1|79717_80386_-	aquaporin	NA	NA	NA	NA	NA
WP_032495846.1|81533_83330_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	37.7	4.4e-105
>prophage 8
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	91513	94442	2109726		Streptococcus_phage(66.67%)	5	NA	NA
WP_000961810.1|91513_91966_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A1X9I727	Streptococcus_phage	71.3	5.5e-57
WP_001132281.1|92002_92182_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1X9I5W4	Streptococcus_phage	86.4	4.1e-24
WP_001833848.1|92318_92507_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000818079.1|92661_92901_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001113214.1|93170_94442_+	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	44.4	2.1e-93
>prophage 9
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	106395	107547	2109726		Clostridium_phage(100.0%)	1	NA	NA
WP_050096570.1|106395_107547_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A7RTT7	Clostridium_phage	29.3	4.6e-31
>prophage 10
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	111150	137940	2109726		Acinetobacter_phage(25.0%)	24	NA	NA
WP_000076511.1|111150_111918_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	37.2	1.2e-30
WP_000658684.1|111914_112919_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	38.9	3.2e-57
WP_000601927.1|112929_113496_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.7	1.5e-35
WP_050257636.1|113492_114854_-	anthranilate synthase component I	NA	S4VNU7	Pandoravirus	27.1	1.5e-28
WP_000692938.1|115226_115388_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000789949.1|115995_116997_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_000656286.1|117104_117473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000127552.1|117568_118279_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	43.0	1.3e-12
WP_001216185.1|118281_119973_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_000589142.1|119984_120995_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	34.7	1.4e-20
WP_000738375.1|121098_122166_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_000793819.1|122190_122850_-	DUF1868 domain-containing protein	NA	NA	NA	NA	NA
WP_000239024.1|123562_123859_-	hypothetical protein	NA	NA	NA	NA	NA
WP_114865808.1|123842_126002_-	multi-ligand-binding adhesin PfbA	NA	E5AGC7	Erwinia_phage	32.5	4.3e-06
WP_001134501.1|127132_128359_-	DegT/DnrJ/EryC1/StrS aminotransferase family protein	NA	A0A2P1ELT3	Moumouvirus	29.1	3.0e-20
WP_000922188.1|128401_129094_-	sugar transferase	NA	NA	NA	NA	NA
WP_001180140.1|129266_131018_-	ABC transporter ATP-binding protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	25.7	2.1e-19
WP_114865809.1|131007_132753_-	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	29.7	7.6e-46
WP_000825494.1|132958_133336_-	DUF421 domain-containing protein	NA	NA	NA	NA	NA
WP_000767469.1|133997_134825_+	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	80.2	4.6e-126
WP_075218847.1|134836_134935_+	glyoxalase	NA	NA	NA	NA	NA
WP_001810061.1|134979_135219_+	glyoxalase	NA	NA	NA	NA	NA
WP_114865810.1|136096_136678_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_114865811.1|136677_137940_+	purine permease	NA	Q9KX94	Enterobacteria_phage	29.2	5.0e-31
>prophage 11
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	147122	150514	2109726		Lactobacillus_phage(50.0%)	3	NA	NA
WP_000557779.1|147122_147929_-	nicotinamide riboside transporter PnuC	NA	A0A2K9VCL6	Lactobacillus_phage	28.0	6.5e-16
WP_000182972.1|148272_149793_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_000575210.1|149785_150514_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.2	9.0e-33
>prophage 12
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	154204	164193	2109726		uncultured_Mediterranean_phage(28.57%)	13	NA	NA
WP_000167851.1|154204_154906_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	36.5	9.2e-35
WP_000777248.1|155328_156288_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.8	4.0e-57
WP_001193674.1|156277_157234_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_000764303.1|157230_157983_+	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.1	5.6e-14
WP_000858261.1|158078_159044_+	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000821640.1|159268_159511_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	59.4	1.3e-17
WP_001222228.1|159510_160233_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000105310.1|160219_160789_-	segregation/condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	34.9	5.0e-15
WP_000351908.1|160801_161536_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	22.3	5.3e-09
WP_114865812.1|161535_162276_-	site-specific tyrosine recombinase XerD	NA	NA	NA	NA	NA
WP_000560725.1|162266_162728_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_001118963.1|162724_163246_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_000182412.1|163221_164193_-	nucleoside-triphosphate diphosphatase	NA	C4N227	Ugandan_cassava_brown_streak_virus	29.9	4.9e-10
>prophage 13
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	170392	175546	2109726		Indivirus(33.33%)	4	NA	NA
WP_000157664.1|170392_171196_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SE00	Indivirus	22.4	8.2e-11
WP_001012090.1|171208_172102_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_001291293.1|173541_174468_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.1	2.0e-21
WP_000159554.1|174478_175546_-	ABC transporter ATP-binding protein	NA	A0A2R8FFL6	Cedratvirus	24.7	6.6e-08
>prophage 14
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	190987	192244	2109726	transposase	Streptococcus_phage(100.0%)	1	NA	NA
WP_114865814.1|190987_192244_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	93.1	2.1e-223
>prophage 15
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	200974	202354	2109726		Streptococcus_phage(100.0%)	1	NA	NA
WP_114865816.1|200974_202354_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	E4ZFI6	Streptococcus_phage	33.9	5.4e-71
>prophage 16
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	207124	209712	2109726		uncultured_virus(50.0%)	3	NA	NA
WP_000031573.1|207124_208747_-	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	56.1	2.3e-153
WP_000917339.1|208762_209047_-	co-chaperone GroES	NA	NA	NA	NA	NA
WP_000282467.1|209316_209712_-	single-stranded DNA-binding protein	NA	A1EAD1	Streptococcus_phage	45.5	3.0e-27
>prophage 17
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	224614	228028	2109726		Mycoplasma_phage(50.0%)	3	NA	NA
WP_000627602.1|224614_225619_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	36.4	3.2e-20
WP_044789266.1|225630_227325_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_001054457.1|227326_228028_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	46.4	1.6e-23
>prophage 18
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	236178	240354	2109726		Streptococcus_phage(50.0%)	3	NA	NA
WP_000405234.1|236178_237135_-	N-acetylmuramoyl-L-alanine amidase family protein	NA	A0A1S5SE15	Streptococcus_phage	95.9	2.7e-154
WP_001036293.1|237510_238881_-	MATE family efflux transporter	NA	NA	NA	NA	NA
WP_001085463.1|239187_240354_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	61.7	3.5e-119
>prophage 19
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	248197	257604	2109726		Bacillus_virus(25.0%)	4	NA	NA
WP_000571415.1|248197_248830_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	2.8e-22
WP_000438287.1|249758_250172_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	5.6e-24
WP_000228770.1|250282_253960_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.7	2.4e-65
WP_000907145.1|253992_257604_-	DNA-directed RNA polymerase subunit beta	NA	A0A2P0VMZ3	Tetraselmis_virus	26.4	1.2e-40
>prophage 20
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	263569	265644	2109726		uncultured_Mediterranean_phage(50.0%)	3	NA	NA
WP_001280769.1|263569_264058_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	32.5	3.0e-16
WP_000706963.1|264047_264587_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_000747993.1|264651_265644_-	aspartate--ammonia ligase	NA	A0A1C9C5F0	Heterosigma_akashiwo_virus	40.1	8.2e-53
>prophage 21
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	277621	278263	2109726		Planktothrix_phage(100.0%)	1	NA	NA
WP_000565531.1|277621_278263_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.0	5.5e-26
>prophage 22
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	287364	288753	2109726		Geobacillus_virus(100.0%)	1	NA	NA
WP_000453139.1|287364_288753_-	Cof-type HAD-IIB family hydrolase	NA	A0A0H3UZF4	Geobacillus_virus	38.5	4.4e-20
>prophage 23
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	293994	294879	2109726		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_000219348.1|293994_294879_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	31.3	6.6e-22
>prophage 24
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	316053	317463	2109726		Pandoravirus(100.0%)	1	NA	NA
WP_000728310.1|316053_317463_+	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	27.4	2.3e-40
>prophage 25
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	344578	354329	2109726	tRNA	Synechococcus_phage(25.0%)	8	NA	NA
WP_000649466.1|344578_345637_-	zinc-dependent alcohol dehydrogenase family protein	NA	E3SJ82	Synechococcus_phage	27.1	2.1e-14
WP_001134457.1|345799_346951_-	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_114865827.1|347103_348921_-	acetyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	24.8	8.3e-19
WP_001285255.1|349021_350164_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	43.4	1.3e-86
WP_001108863.1|350293_351151_+	DUF975 family protein	NA	NA	NA	NA	NA
WP_000022519.1|351928_352288_-	DUF1304 domain-containing protein	NA	NA	NA	NA	NA
WP_001820859.1|352298_352637_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001812158.1|353150_354329_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A0E3XB61	Gordonia_phage	40.5	8.6e-17
>prophage 26
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	370137	390250	2109726	tRNA,transposase	Bacillus_phage(50.0%)	16	NA	NA
WP_000859856.1|370137_371904_-	multidrug efflux ABC transporter subunit PatB	NA	W8CYL7	Bacillus_phage	25.6	9.1e-39
WP_000908146.1|372694_374389_-	multidrug efflux ABC transporter subunit PatA	NA	G9BWD6	Planktothrix_phage	30.7	5.7e-14
WP_000963688.1|374535_377070_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	21.7	3.0e-35
WP_001231472.1|377120_377567_-	arginine repressor	NA	NA	NA	NA	NA
WP_114865829.1|377702_379394_+|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	32.3	1.6e-80
WP_001863203.1|380252_380681_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000166478.1|380764_381472_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.6	1.8e-38
WP_000833270.1|381472_382804_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	34.9	1.9e-33
WP_114865830.1|382970_383846_+	phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000165887.1|383963_384827_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_000049768.1|384819_385635_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_000536449.1|385636_386389_+	phosphate ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	27.4	3.9e-15
WP_001245781.1|386403_387054_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_000183464.1|387121_387538_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_000415108.1|388312_389329_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000202229.1|389350_390250_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	50.3	3.1e-75
>prophage 27
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	397237	400635	2109726	tRNA	Yersinia_phage(50.0%)	2	NA	NA
WP_000546891.1|397237_398494_+|tRNA	tyrosine--tRNA ligase	tRNA	A0A2C9CYK4	Yersinia_phage	41.5	1.9e-75
WP_000008803.1|398571_400635_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	26.2	1.7e-52
>prophage 28
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	404152	406411	2109726		Iris_mild_mosaic_virus(100.0%)	1	NA	NA
WP_000950158.1|404152_406411_-	glycogen/starch/alpha-glucan family phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	37.5	5.7e-09
>prophage 29
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	415370	417134	2109726	tRNA	Klosneuvirus(100.0%)	1	NA	NA
WP_000830875.1|415370_417134_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SJ84	Klosneuvirus	26.4	5.0e-13
>prophage 30
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	427880	428738	2109726		Tupanvirus(100.0%)	1	NA	NA
WP_114865834.1|427880_428738_-	transketolase	NA	A0A2K9L6P9	Tupanvirus	31.1	7.1e-29
>prophage 31
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	457961	458846	2109726		Klosneuvirus(100.0%)	1	NA	NA
WP_001808444.1|457961_458846_-	SPFH domain-containing protein	NA	A0A1V0SL90	Klosneuvirus	32.5	6.8e-35
>prophage 32
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	477099	482704	2109726		Bacillus_phage(33.33%)	6	NA	NA
WP_001269488.1|477099_477804_-	metal ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.8	5.7e-08
WP_001249319.1|477803_478244_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000919870.1|478398_479667_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_000351967.1|479659_479899_-	D-alanine--poly(phosphoribitol) ligase subunit DltC	NA	NA	NA	NA	NA
WP_000969739.1|479912_481157_-	D-alanyl-lipoteichoic acid biosynthesis protein DltB	NA	A0A125RNP0	Pseudomonas_phage	28.7	2.5e-22
WP_000066731.1|481153_482704_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9KZV5	Tupanvirus	28.4	4.7e-39
>prophage 33
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	488371	489076	2109726		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000980827.1|488371_489076_-	aquaporin family protein	NA	M1HJ77	Paramecium_bursaria_Chlorella_virus	31.7	3.1e-22
>prophage 34
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	495131	596988	2109726	holin,protease,tRNA,bacteriocin,transposase	Streptococcus_phage(29.63%)	88	NA	NA
WP_050213726.1|495131_496112_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_114865840.1|496330_497224_-	pneumococcal surface protein PspC, LPXTG-anchored form	NA	NA	NA	NA	NA
WP_114865841.1|497427_498657_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	89.7	5.7e-213
WP_114865842.1|498860_500972_-|holin	choline-binding protein CbpA	holin	NA	NA	NA	NA
WP_000241927.1|501050_501578_-	isoprenylcysteine carboxyl methyltransferase family protein	NA	NA	NA	NA	NA
WP_000594667.1|501672_503004_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_001024077.1|503000_503654_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001109701.1|504295_506728_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	40.6	6.5e-128
WP_001211274.1|506729_507188_-	CtsR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000136224.1|507306_508035_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.2	1.0e-28
WP_000754546.1|508034_509042_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001813866.1|509080_509839_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000647660.1|509801_510092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061747073.1|510348_511695_-|holin	choline binding-anchored murein hydrolase CbpD	holin	NA	NA	NA	NA
WP_001278167.1|511783_512050_-	hypothetical protein	NA	NA	NA	NA	NA
WP_114865843.1|512051_513404_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	61.3	3.7e-149
WP_000864220.1|513447_513900_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_000715124.1|513896_515870_-	DHH family phosphoesterase	NA	NA	NA	NA	NA
WP_000599107.1|516005_516554_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_000649968.1|516633_517296_-	ComF family protein	NA	NA	NA	NA	NA
WP_000867601.1|517292_518591_-	DEAD/DEAH box helicase	NA	A0A1X9I5S6	Streptococcus_phage	66.6	9.3e-166
WP_114865844.1|518646_519282_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	71.0	1.3e-75
WP_050200397.1|519566_520487_+	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	80.7	6.9e-139
WP_000841827.1|520683_521082_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_000973416.1|521521_521845_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_000808063.1|522090_523131_-	elongation factor Ts	NA	NA	NA	NA	NA
WP_000268472.1|523209_523989_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_000727012.1|524211_525390_-	CHAP domain-containing protein	NA	NA	NA	NA	NA
WP_001249454.1|525483_525978_-	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_001078983.1|525977_526796_-	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_000377893.1|526854_527649_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_000510412.1|527641_528481_-	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	27.6	1.1e-13
WP_000835715.1|528465_529293_-	energy-coupling factor transporter ATPase	NA	W8CYL7	Bacillus_phage	33.3	3.5e-17
WP_000712132.1|529289_529835_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_001227959.1|529845_530667_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_114865845.1|530708_531992_-	insulinase family protein	NA	A0A0G2Y5U8	Acanthamoeba_polyphaga_mimivirus	31.0	2.7e-16
WP_000424273.1|531988_533239_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	42.3	2.0e-93
WP_000455903.1|533397_533766_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	57.3	7.0e-18
WP_000266651.1|533768_534866_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_000073428.1|534916_536395_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	2.2e-94
WP_000165444.1|536546_537572_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000958770.1|537777_539400_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	26.2	3.4e-48
WP_000834685.1|539461_542005_+	YfhO family protein	NA	NA	NA	NA	NA
WP_000649625.1|543885_545139_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	80.8	5.3e-150
WP_001158266.1|545398_545941_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_114865846.1|546301_547699_+|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_000866075.1|547958_548711_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_025169508.1|548707_550033_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000799697.1|550045_550186_-	competence-stimulating peptide ComC	NA	NA	NA	NA	NA
WP_000695929.1|550467_550947_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_000681598.1|551129_552311_+|protease	serine protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	26.1	1.5e-16
WP_000410381.1|552368_553127_+	ParB/RepB/Spo0J family partition protein	NA	S5VSZ7	Leptospira_phage	36.1	1.6e-16
WP_000660615.1|553339_554701_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_000581147.1|554859_555996_+	DNA polymerase III subunit beta	NA	A0A0A8IL17	Aurantimonas_phage	24.1	2.0e-23
WP_000285191.1|556060_556255_+	DUF951 family protein	NA	NA	NA	NA	NA
WP_001218707.1|556338_557454_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_000163928.1|557524_558094_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_000258130.1|558094_561604_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_001234978.1|561661_561928_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA	NA
WP_050087440.1|561920_562289_+	septum formation initiator family protein	NA	NA	NA	NA	NA
WP_001224760.1|562408_563677_+	serine hydrolase	NA	NA	NA	NA	NA
WP_001209049.1|563673_564951_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A7K9Y8	Acanthocystis_turfacea_chlorella_virus	24.6	6.7e-07
WP_000892185.1|564954_565497_+	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	28.9	4.7e-10
WP_000744551.1|565512_567471_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	H8ZJI5	Ostreococcus_tauri_virus	45.8	2.4e-109
WP_000588911.1|567592_568072_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_000939546.1|575498_575735_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001821607.1|575965_577252_+	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	36.9	1.0e-71
WP_000291872.1|577452_577920_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_000701992.1|578105_578549_+	dUTP diphosphatase	NA	Q2WG49	Clostridium_botulinum_D_phage	47.3	2.1e-29
WP_001836031.1|578550_579066_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_073176637.1|579079_580441_+	DNA repair protein RadA	NA	NA	NA	NA	NA
WP_001809263.1|580513_581011_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_114865847.1|581031_581376_+	hypothetical protein	NA	NA	NA	NA	NA
WP_114865848.1|581372_582723_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	49.4	5.0e-61
WP_050213940.1|582729_583290_+|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000010163.1|583434_584403_+	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	34.7	4.0e-44
WP_025172712.1|584519_584873_+	ribose-phosphate pyrophosphokinase	NA	NA	NA	NA	NA
WP_001866636.1|585195_585465_+	hypothetical protein	NA	NA	NA	NA	NA
WP_054383059.1|585984_588618_+	DNA polymerase I	NA	A0A218MKQ4	uncultured_virus	31.5	5.5e-56
WP_050209603.1|588702_589140_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_000009170.1|589412_590423_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_000366342.1|590571_591741_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_000616164.1|591737_592508_+	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_050217855.1|592504_593497_+	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_000136447.1|593502_593736_+	acyl carrier protein	NA	A0A2I7RIC8	Vibrio_phage	40.6	3.3e-05
WP_001093486.1|594274_594505_+|bacteriocin	bacteriocin-like peptide BlpU	bacteriocin	NA	NA	NA	NA
WP_000343888.1|595255_596149_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000837726.1|596691_596988_+|bacteriocin	circular bacteriocin, circularin A/uberolysin family	bacteriocin	NA	NA	NA	NA
>prophage 35
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	600054	618625	2109726		Synechococcus_phage(22.22%)	14	NA	NA
WP_000668290.1|600054_602208_+	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	28.0	1.0e-44
WP_000043300.1|603738_604446_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D8KNF0	Synechococcus_phage	39.2	1.8e-41
WP_000361216.1|604647_608373_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	25.9	5.6e-38
WP_000220633.1|608465_609908_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	35.1	5.7e-55
WP_000182575.1|609944_610967_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.9	1.2e-64
WP_000717507.1|610963_611509_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.0	5.7e-24
WP_000894018.1|611592_612102_+	VanZ family protein	NA	NA	NA	NA	NA
WP_000167081.1|612126_613674_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.3	9.1e-75
WP_000772194.1|613795_615058_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_001809271.1|615314_615431_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000805599.1|615460_615949_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	3.2e-18
WP_000099031.1|615935_617027_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000614701.1|617036_617264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000610749.1|617326_618625_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.1	6.5e-18
>prophage 36
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	633458	634223	2109726		Streptococcus_phi-m46.1-like_phage(100.0%)	1	NA	NA
WP_000615004.1|633458_634223_+	nucleoside phosphorylase	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	68.4	1.3e-58
>prophage 37
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	642074	642773	2109726		Bacillus_phage(100.0%)	1	NA	NA
WP_000520641.1|642074_642773_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.0	2.0e-37
>prophage 38
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	657423	690021	2109726	bacteriocin,tRNA	Streptococcus_phage(33.33%)	32	NA	NA
WP_001035702.1|657423_659274_+	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	30.1	2.2e-27
WP_000200892.1|659711_660344_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_000500038.1|660365_661238_-	L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha	NA	NA	NA	NA	NA
WP_000838912.1|661246_661918_-	L-serine ammonia-lyase, iron-sulfur-dependent, subunit beta	NA	NA	NA	NA	NA
WP_050234362.1|662159_662747_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A288TY55	Enterococcus_phage	58.4	1.6e-27
WP_001189272.1|662798_663119_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001832574.1|663577_663829_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000724257.1|663880_665989_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000571330.1|665985_666627_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	4.3e-23
WP_114865854.1|666833_667640_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_001268172.1|669991_670855_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001818085.1|671320_673540_+	peptidase domain-containing ABC transporter	NA	W8CYL7	Bacillus_phage	25.9	5.2e-39
WP_001096141.1|673532_674000_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000781019.1|673996_675349_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_000420335.1|675496_675802_+|bacteriocin	SPAR17_0115 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_069288096.1|676135_676510_+|bacteriocin	SPH_0224 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_000511668.1|676516_676699_+	hypothetical protein	NA	NA	NA	NA	NA
WP_114865855.1|676717_677620_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424454.1|677675_678029_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162797625.1|678025_678754_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000770314.1|679497_679737_+	hypothetical protein	NA	M1Q0Z8	Streptococcus_phage	54.1	7.2e-16
WP_130884359.1|679798_679999_+	hypothetical protein	NA	M1Q0Z8	Streptococcus_phage	59.7	5.7e-14
WP_114865857.1|680284_682558_+	pneumococcal surface protein A	NA	NA	NA	NA	NA
WP_001282984.1|682958_684080_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_061364336.1|684220_684676_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_000220953.1|684685_686599_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_001809448.1|686730_686880_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000331983.1|686951_688631_-	ribonuclease J	NA	NA	NA	NA	NA
WP_000639577.1|688632_688866_-	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA	NA
WP_025170793.1|689247_689469_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000974047.1|689681_689834_-|bacteriocin	fratricide two-peptide bacteriocin subunit CibB	bacteriocin	NA	NA	NA	NA
WP_000180803.1|689835_690021_-|bacteriocin	fratricide two-peptide bacteriocin subunit CibA	bacteriocin	NA	NA	NA	NA
>prophage 39
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	697073	698690	2109726		Indivirus(100.0%)	1	NA	NA
WP_000288029.1|697073_698690_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	36.0	3.0e-28
>prophage 40
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	701827	703000	2109726		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_050237652.1|701827_703000_+	nucleotide sugar dehydrogenase	NA	O41091	Paramecium_bursaria_Chlorella_virus	43.8	6.0e-79
>prophage 41
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	707606	708884	2109726		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001244305.1|707606_708884_+	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	24.2	2.1e-16
>prophage 42
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	718428	719490	2109726		Planktothrix_phage(100.0%)	1	NA	NA
WP_000085677.1|718428_719490_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.7	6.7e-29
>prophage 43
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	728575	734264	2109726		Staphylococcus_phage(60.0%)	5	NA	NA
WP_000018169.1|728575_730525_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.1	1.0e-70
WP_001099502.1|730850_731318_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	52.6	3.7e-40
WP_001820536.1|731318_732524_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	49.7	2.7e-106
WP_000493842.1|732543_733179_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	46.9	1.3e-43
WP_050220000.1|733163_734264_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	38.2	1.7e-51
>prophage 44
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	739721	743607	2109726		uncultured_Mediterranean_phage(50.0%)	2	NA	NA
WP_114865861.1|739721_742553_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	56.3	1.0e-311
WP_001042860.1|742545_743607_+	aminopeptidase P family protein	NA	A0A0P0I8D7	Acinetobacter_phage	26.9	2.6e-20
>prophage 45
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	751509	755002	2109726		Enterococcus_phage(100.0%)	3	NA	NA
WP_000560899.1|751509_753717_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	65.5	9.0e-278
WP_000423414.1|753912_754419_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001064208.1|754411_755002_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A0C5K925	Enterococcus_phage	56.5	1.7e-53
>prophage 46
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	775154	776246	2109726		Mycoplasma_phage(100.0%)	1	NA	NA
WP_001289368.1|775154_776246_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	31.7	1.3e-19
>prophage 47
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	782735	802260	2109726	tRNA,protease	Escherichia_phage(14.29%)	15	NA	NA
WP_000248305.1|782735_785174_+	glycyl radical protein	NA	Q66LZ4	Escherichia_phage	52.8	3.6e-09
WP_000395427.1|785192_785861_+	fructose-6-phosphate aldolase	NA	A0A1D8KKK9	Synechococcus_phage	28.2	1.2e-18
WP_001217828.1|785878_786967_+	glycerol dehydrogenase	NA	NA	NA	NA	NA
WP_114865863.1|787421_789923_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	66.8	0.0e+00
WP_001144913.1|790116_790812_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000628392.1|790823_791240_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000970381.1|792054_792147_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_162797633.1|792307_793279_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	31.6	3.9e-07
WP_001815451.1|793259_793832_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_000466719.1|794062_794821_+	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	47.5	2.3e-23
WP_114865865.1|794829_795633_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000900660.1|795654_796914_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_000814070.1|796926_798780_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	26.8	9.7e-07
WP_000943527.1|798879_800259_+	glycoside hydrolase family 1 protein	NA	NA	NA	NA	NA
WP_000334260.1|800451_802260_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	38.4	3.6e-99
>prophage 48
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	808927	818610	2109726		Streptococcus_phage(33.33%)	6	NA	NA
WP_000090347.1|808927_811009_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	29.0	1.7e-63
WP_054382982.1|811112_815504_+	PolC-type DNA polymerase III	NA	A0A0K2SUJ2	Clostridium_phage	38.5	2.1e-20
WP_000041493.1|815605_815869_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA	NA
WP_000913054.1|815861_816140_+	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA	NA
WP_000243922.1|816334_817576_+	aminopeptidase	NA	NA	NA	NA	NA
WP_000266273.1|817629_818610_-	HNH endonuclease	NA	F5B475	Synechococcus_phage	42.9	1.5e-06
>prophage 49
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	824043	827822	2109726		Tupanvirus(50.0%)	3	NA	NA
WP_050217901.1|824043_825063_-	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	25.3	7.9e-27
WP_000162363.1|825401_826214_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_000359281.1|826403_827822_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	31.1	5.8e-44
>prophage 50
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	830960	831515	2109726		Pneumococcus_phage(100.0%)	1	NA	NA
WP_000380924.1|830960_831515_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	43.8	3.7e-39
>prophage 51
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	835130	836567	2109726		Pandoravirus(100.0%)	1	NA	NA
WP_050147864.1|835130_836567_+	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	25.0	2.9e-27
>prophage 52
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	865025	865220	2109726		Thermoanaerobacterium_phage(100.0%)	1	NA	NA
WP_001082474.1|865025_865220_-	helix-turn-helix transcriptional regulator	NA	I3VYZ1	Thermoanaerobacterium_phage	42.6	7.2e-06
>prophage 53
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	870511	933153	2109726	protease,integrase,transposase,holin	Streptococcus_phage(27.27%)	55	878215:878228	924470:924483
WP_114865871.1|870511_872617_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	37.7	2.0e-117
WP_050090765.1|872912_873395_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_114865872.1|873489_874974_-	DUF1846 domain-containing protein	NA	NA	NA	NA	NA
WP_083967039.1|875126_876737_+	alpha-glucosidase	NA	NA	NA	NA	NA
878215:878228	attL	GTTTCTTTGTTTTC	NA	NA	NA	NA
WP_114865953.1|878595_879894_+	LCP family protein	NA	A0A1X9I5X1	Streptococcus_phage	59.4	3.0e-132
WP_114865873.1|879895_880627_+	tyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_000664161.1|880635_881328_+	capsular polysaccharide biosynthesis protein CpsC	NA	A0A1X9I5E1	Streptococcus_phage	58.1	2.1e-63
WP_001142557.1|881337_882027_+	tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	63.3	2.4e-72
WP_114865874.1|882041_883403_+	sugar transferase	NA	NA	NA	NA	NA
WP_000686641.1|883406_883856_+	UDP-N-acetylglucosamine--LPS N-acetylglucosamine transferase	NA	NA	NA	NA	NA
WP_000578428.1|883855_884335_+	multidrug MFS transporter	NA	NA	NA	NA	NA
WP_000697445.1|884576_885674_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_054382964.1|885701_886355_+	DUF1919 domain-containing protein	NA	NA	NA	NA	NA
WP_000612419.1|886351_887074_+	exopolysaccharide biosynthesis protein	NA	A0A1V0SL98	Klosneuvirus	28.3	9.9e-08
WP_054382955.1|887070_888243_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_078102908.1|888391_888733_+	acyltransferase	NA	NA	NA	NA	NA
WP_044812582.1|888742_889930_+	teichoic acid biosynthesis protein	NA	NA	NA	NA	NA
WP_114865954.1|889946_891350_+	oligosaccharide flippase family protein	NA	NA	NA	NA	NA
WP_044812580.1|891462_891855_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	43.7	2.1e-20
WP_114865875.1|892272_893280_+	acyltransferase	NA	NA	NA	NA	NA
WP_114865876.1|893457_895440_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_114865877.1|895740_901044_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_114865878.1|901210_903370_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_000248787.1|903366_903963_-	Holliday junction resolvase RecU	NA	A0A1L2JY30	Aeribacillus_phage	33.9	8.7e-18
WP_061459511.1|904028_904556_+	DUF1273 domain-containing protein	NA	NA	NA	NA	NA
WP_000146522.1|904625_904955_+	cell division regulator GpsB	NA	NA	NA	NA	NA
WP_050114552.1|905440_906598_+	class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
WP_114865879.1|906610_908005_+	mid-cell-anchored protein MapZ	NA	NA	NA	NA	NA
WP_000158794.1|908080_909505_+	NADP-dependent phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	29.6	1.6e-41
WP_114865880.1|909516_910206_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_044789064.1|910303_911329_+|holin	choline-binding protein CbpC	holin	NA	NA	NA	NA
WP_044789063.1|911346_912222_+|holin	choline-binding protein CbpJ	holin	NA	NA	NA	NA
WP_000765693.1|912339_913572_-	MFS transporter	NA	NA	NA	NA	NA
WP_041172747.1|913582_914203_-	lanthionine synthetase	NA	NA	NA	NA	NA
WP_078132431.1|914102_914510_-	lantibiotic-modifying protein	NA	NA	NA	NA	NA
WP_114865881.1|915103_915433_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_000163323.1|915554_916433_+	mevalonate kinase	NA	NA	NA	NA	NA
WP_000373457.1|916414_917368_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
WP_061366143.1|917354_918362_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
WP_000210617.1|918345_919356_+	type 2 isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA	NA
WP_001224637.1|919433_920132_+	cell wall-active antibiotics response protein	NA	NA	NA	NA	NA
WP_000743680.1|920128_921124_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000698434.1|921137_921770_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001808881.1|921770_922013_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075218974.1|921937_922249_+	DNA alkylation repair protein	NA	NA	NA	NA	NA
WP_000754501.1|922689_922929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_073078456.1|922973_923603_+|protease	serine protease	protease	NA	NA	NA	NA
WP_000378125.1|923901_924294_+|integrase	tyrosine-type recombinase/integrase	integrase	C9E2L6	Enterococcus_phage	41.4	3.6e-20
WP_000116465.1|924454_925738_+	trigger factor	NA	NA	NA	NA	NA
924470:924483	attR	GAAAACAAAGAAAC	NA	NA	NA	NA
WP_114865882.1|925785_928152_-	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	26.9	1.4e-58
WP_001083986.1|928279_928894_-	signal peptidase I	NA	NA	NA	NA	NA
WP_000146864.1|928897_929779_-	ribonuclease HIII	NA	NA	NA	NA	NA
WP_000002019.1|929865_930168_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_000624515.1|930164_930713_+	CvpA family protein	NA	NA	NA	NA	NA
WP_001035002.1|930816_933153_+	endonuclease MutS2	NA	Q94M10	Lactobacillus_phage	55.1	1.3e-21
>prophage 54
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	936617	937892	2109726	tRNA	uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_000884256.1|936617_937892_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.7	1.5e-91
>prophage 55
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	944779	945511	2109726		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
WP_000763052.1|944779_945511_+	3-oxoacyl-[acyl-carrier-protein] reductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	30.9	2.2e-15
>prophage 56
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	956790	958335	2109726		Streptococcus_phage(100.0%)	1	NA	NA
WP_001025426.1|956790_958335_+	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	28.3	1.4e-35
>prophage 57
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	963545	965246	2109726		Yellowstone_lake_phycodnavirus(100.0%)	1	NA	NA
WP_000411764.1|963545_965246_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	32.2	1.2e-67
>prophage 58
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	970234	970975	2109726		Planktothrix_phage(100.0%)	1	NA	NA
WP_050277832.1|970234_970975_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.5	1.3e-26
>prophage 59
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	978551	980876	2109726		Tetraselmis_virus(100.0%)	1	NA	NA
WP_000260643.1|978551_980876_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	32.9	7.9e-115
>prophage 60
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	988962	1040020	2109726	tRNA,bacteriocin,protease	Planktothrix_phage(11.11%)	48	NA	NA
WP_000656537.1|988962_990645_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.4	4.5e-19
WP_001148103.1|990629_991460_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_000181374.1|991652_992156_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_000185835.1|992614_993178_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_001813491.1|993191_993818_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_000867290.1|993845_994235_+	chromosome partitioning protein ParB	NA	NA	NA	NA	NA
WP_000333647.1|994239_994689_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000418402.1|994816_995404_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
WP_000105242.1|995793_997401_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	47.0	8.9e-142
WP_000026636.1|997959_999591_-	Na/Pi cotransporter family protein	NA	NA	NA	NA	NA
WP_114865886.1|999883_1004866_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_001096750.1|1004955_1006152_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_000119900.1|1006287_1006815_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_000659547.1|1006891_1007248_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001122900.1|1007284_1008631_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_001808898.1|1008720_1008840_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000410533.1|1008804_1008954_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078149823.1|1009384_1010704_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_000651181.1|1010760_1011558_+	tyrosine-type DNA invertase PsrA	NA	A0A0H4TI16	Erysipelothrix_phage	28.7	1.7e-21
WP_001813510.1|1011568_1012174_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_000187262.1|1012121_1013672_-	restriction endonuclease subunit S	NA	A0A1V0SLK8	Klosneuvirus	25.6	9.9e-13
WP_000029046.1|1013671_1015135_-	SAM-dependent DNA methyltransferase	NA	NA	NA	NA	NA
WP_044788652.1|1015147_1017481_-	DEAD/DEAH box helicase family protein	NA	A0A097BY72	Enterococcus_phage	26.5	1.2e-25
WP_001088687.1|1018087_1018597_+	DUF2812 domain-containing protein	NA	NA	NA	NA	NA
WP_000255769.1|1018760_1019795_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_000046031.1|1019821_1020346_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_000034662.1|1020824_1022648_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	47.2	1.3e-133
WP_001066288.1|1023755_1024892_+	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	32.0	1.5e-26
WP_001813906.1|1025213_1025453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000777760.1|1025614_1025902_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001278301.1|1025911_1026322_-	HIT family protein	NA	B5LJ12	Mycobacterium_phage	31.6	3.4e-05
WP_000889923.1|1026389_1027121_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	9.0e-25
WP_050213819.1|1027117_1028167_+	multidrug ABC transporter permease	NA	NA	NA	NA	NA
WP_000132572.1|1028334_1028664_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000876676.1|1028941_1029280_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001219147.1|1029284_1030022_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_050213946.1|1030035_1031376_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000358817.1|1031417_1031573_-	quorum-sensing system pheromone BlpC	NA	NA	NA	NA	NA
WP_050213945.1|1031629_1032991_-|bacteriocin	bacteriocin secretion accessory protein	bacteriocin	NA	NA	NA	NA
WP_054382973.1|1035406_1035661_+|bacteriocin	two-peptide bacteriocin subunit BlpM	bacteriocin	NA	NA	NA	NA
WP_001099490.1|1035676_1035880_+|bacteriocin	two-peptide bacteriocin subunit BlpN	bacteriocin	NA	NA	NA	NA
WP_001809846.1|1036123_1036273_+|bacteriocin	bacteriocin-like peptide BlpO	bacteriocin	NA	NA	NA	NA
WP_000346296.1|1036376_1036496_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001812219.1|1036964_1037336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000877381.1|1037964_1038348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_114865887.1|1038399_1039089_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000276502.1|1039130_1039379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000394027.1|1039408_1040020_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 61
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1044016	1046809	2109726		Bodo_saltans_virus(100.0%)	1	NA	NA
WP_114865888.1|1044016_1046809_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	22.9	3.3e-19
>prophage 62
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1053401	1056053	2109726	tRNA	Catovirus(100.0%)	1	NA	NA
WP_000032220.1|1053401_1056053_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.9	3.5e-151
>prophage 63
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1066458	1069512	2109726	tRNA	Pandoravirus(50.0%)	2	NA	NA
WP_114865890.1|1066458_1067874_+	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	23.7	3.3e-23
WP_050155036.1|1068465_1069512_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	32.8	2.8e-27
>prophage 64
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1082519	1083863	2109726	tRNA	Moumouvirus(100.0%)	1	NA	NA
WP_000591096.1|1082519_1083863_+|tRNA	cysteine--tRNA ligase	tRNA	M1PG92	Moumouvirus	35.8	1.2e-46
>prophage 65
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1087719	1092090	2109726		Planktothrix_phage(50.0%)	4	NA	NA
WP_000173729.1|1087719_1088367_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	1.8e-21
WP_000902985.1|1088418_1089798_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000697958.1|1090108_1090765_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000831334.1|1090761_1092090_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	25.7	4.2e-12
>prophage 66
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1097080	1100338	2109726		Planktothrix_phage(50.0%)	2	NA	NA
WP_001229594.1|1097080_1097839_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.1	1.6e-37
WP_162797627.1|1098115_1100338_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.9	3.5e-72
>prophage 67
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1121037	1122030	2109726		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001240806.1|1121037_1122030_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.6	1.8e-15
>prophage 68
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1143977	1144535	2109726		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000828438.1|1143977_1144535_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	40.9	6.9e-33
>prophage 69
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1151563	1153255	2109726		Enterobacteria_phage(100.0%)	1	NA	NA
WP_001864666.1|1151563_1153255_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	32.7	9.4e-25
>prophage 70
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1159751	1165161	2109726		Pandoravirus(50.0%)	5	NA	NA
WP_000554865.1|1159751_1161473_+	aminodeoxychorismate synthase component I	NA	A0A0B5J984	Pandoravirus	29.9	1.2e-38
WP_000766574.1|1161473_1162091_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001042505.1|1162140_1163139_+	N-acetylmuramoyl-L-alanine amidase family protein	NA	NA	NA	NA	NA
WP_000078572.1|1163265_1164225_+	ROK family glucokinase	NA	NA	NA	NA	NA
WP_114865899.1|1164321_1165161_+	thymidylate synthase	NA	U5J9N5	Bacillus_phage	54.3	1.4e-85
>prophage 71
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1170004	1170973	2109726		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000924405.1|1170004_1170973_-	LysR family transcriptional regulator	NA	A0A2H4J8I9	uncultured_Caudovirales_phage	28.9	1.5e-06
>prophage 72
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1177735	1178377	2109726		Bacillus_virus(100.0%)	1	NA	NA
WP_000571289.1|1177735_1178377_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.2	1.4e-24
>prophage 73
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1183089	1187269	2109726		Prochlorococcus_phage(50.0%)	6	NA	NA
WP_000170915.1|1183089_1183722_+	orotate phosphoribosyltransferase	NA	R9S7H3	Prochlorococcus_phage	32.1	2.4e-05
WP_000291699.1|1184182_1184305_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000394077.1|1184400_1185165_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050103640.1|1185164_1185917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000425158.1|1185920_1186625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001002573.1|1186621_1187269_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	27.8	3.3e-18
>prophage 74
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1190789	1192280	2109726	tRNA	Catovirus(100.0%)	1	NA	NA
WP_050167956.1|1190789_1192280_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	39.8	3.3e-90
>prophage 75
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1198125	1199511	2109726		Pithovirus(100.0%)	1	NA	NA
WP_000522101.1|1198125_1199511_+	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	26.4	7.7e-09
>prophage 76
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1204975	1209201	2109726		uncultured_virus(50.0%)	2	NA	NA
WP_000136310.1|1204975_1207219_+	heavy metal translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	37.5	6.7e-95
WP_000191795.1|1207425_1209201_+	pyruvate oxidase	NA	E5EQ70	Micromonas_sp._RCC1109_virus	23.5	1.1e-28
>prophage 77
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1215286	1220016	2109726	protease	Streptococcus_phage(40.0%)	6	NA	NA
WP_000680053.1|1215286_1216462_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	56.6	1.5e-16
WP_001863097.1|1216520_1217366_-	DegV family protein	NA	A0A1X9I5J4	Streptococcus_phage	69.4	4.3e-103
WP_000004139.1|1217490_1218048_+	TetR/AcrR family transcriptional regulator	NA	A0A1X9I6A2	Streptococcus_phage	63.6	1.8e-20
WP_000136976.1|1218066_1218534_+	deoxycytidylate deaminase	NA	A7KUY9	Bacillus_phage	57.6	8.9e-34
WP_000515974.1|1218622_1219252_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000613477.1|1219425_1220016_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	55.1	2.3e-55
>prophage 78
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1223700	1228052	2109726		Planktothrix_phage(50.0%)	5	NA	NA
WP_001186003.1|1223700_1224465_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.1	2.1e-16
WP_000062219.1|1224464_1225175_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	27.7	1.8e-17
WP_000268658.1|1225482_1226139_+	CBS domain-containing protein	NA	M1NSC5	Streptococcus_phage	72.2	2.0e-84
WP_015511312.1|1226246_1227341_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_000022265.1|1227359_1228052_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	34.3	2.0e-29
>prophage 79
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1232443	1243207	2109726		Klosneuvirus(16.67%)	10	NA	NA
WP_050104670.1|1232443_1233787_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	32.4	1.0e-50
WP_000003931.1|1234001_1235192_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	65.7	2.1e-140
WP_000255160.1|1235744_1236680_+	dihydroorotate oxidase	NA	A0A1V0SH91	Hokovirus	43.9	4.6e-66
WP_000879660.1|1236713_1237751_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_000974746.1|1237923_1238529_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	56.7	1.0e-61
WP_001224351.1|1238685_1239216_+	YutD family protein	NA	NA	NA	NA	NA
WP_000804662.1|1239236_1240322_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_000976715.1|1240321_1240804_+	VanZ family protein	NA	NA	NA	NA	NA
WP_000025397.1|1240805_1242347_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	27.9	5.1e-54
WP_000731919.1|1242403_1243207_-	peptidylprolyl isomerase	NA	A0A1V0SCU1	Indivirus	40.0	5.3e-18
>prophage 80
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1252260	1274955	2109726	tRNA	Planktothrix_phage(11.11%)	21	NA	NA
WP_000811482.1|1252260_1252962_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	43.9	4.0e-38
WP_001180425.1|1252963_1254223_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_061367112.1|1254346_1256344_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SEZ7	Hokovirus	30.8	2.8e-84
WP_000665420.1|1256764_1257085_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000738406.1|1257088_1257904_+	membrane protein	NA	NA	NA	NA	NA
WP_001269462.1|1257978_1258905_+	aldo/keto reductase family oxidoreductase	NA	NA	NA	NA	NA
WP_000141910.1|1259004_1259241_+	DUF2829 domain-containing protein	NA	NA	NA	NA	NA
WP_000167112.1|1259233_1259932_+	3-oxoacyl-ACP reductase	NA	A0A0K0KVL6	Prochlorococcus_phage	30.9	2.8e-07
WP_000403354.1|1259942_1260443_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_001853156.1|1260420_1261290_+	PEP-utilizing enzyme, TIM barrel domain protein	NA	NA	NA	NA	NA
WP_000188830.1|1261264_1261705_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_114865902.1|1261827_1264374_+	M1 family metallopeptidase	NA	A0A0P0IY26	Acinetobacter_phage	27.1	2.2e-73
WP_000590640.1|1264482_1265157_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	33.6	3.1e-27
WP_000491790.1|1265146_1266481_+	HAMP domain-containing histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	34.0	1.2e-06
WP_001145225.1|1266514_1266802_-	DUF3270 domain-containing protein	NA	NA	NA	NA	NA
WP_114865903.1|1266941_1267871_+	U32 family peptidase	NA	NA	NA	NA	NA
WP_000848694.1|1268070_1270521_+	bifunctional DnaQ family exonuclease/ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	46.7	4.8e-195
WP_114865904.1|1270557_1271781_+	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA	NA
WP_000241401.1|1271791_1272346_+	DJ-1/PfpI family protein	NA	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	27.2	6.4e-07
WP_001809365.1|1272430_1272994_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_000134047.1|1273008_1274955_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	45.6	3.2e-146
>prophage 81
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1280130	1285466	2109726	protease	Cronobacter_phage(33.33%)	5	NA	NA
WP_000882517.1|1280130_1282389_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	40.4	4.6e-128
WP_000443573.1|1282617_1282848_-	YkuJ family protein	NA	NA	NA	NA	NA
WP_001011637.1|1283037_1283721_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_050123693.1|1283720_1284455_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	43.1	1.3e-36
WP_000192094.1|1284608_1285466_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	41.5	5.2e-40
>prophage 82
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1293406	1310835	2109726	transposase	Bacillus_virus(28.57%)	18	NA	NA
WP_000684232.1|1293406_1293931_-	DNA topology modulation protein	NA	A0A097BYE2	Leuconostoc_phage	41.8	1.4e-27
WP_001274000.1|1293983_1294220_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_000180489.1|1294287_1295208_-	type I pantothenate kinase	NA	NA	NA	NA	NA
WP_001818400.1|1295397_1295634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050137538.1|1296016_1296598_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001202975.1|1296594_1297872_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	51.5	2.4e-113
WP_061367117.1|1297889_1298552_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_000246093.1|1298538_1298928_+	cytidine deaminase	NA	NA	NA	NA	NA
WP_001036130.1|1299017_1300070_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000929853.1|1300213_1301749_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.5	1.4e-19
WP_000473764.1|1301741_1302800_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000022878.1|1302802_1303759_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000532844.1|1304191_1304359_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001811990.1|1304358_1304631_+|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	50.6	4.5e-14
WP_050273982.1|1304692_1305181_+|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	51.6	3.3e-39
WP_000628787.1|1305223_1305865_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_050087530.1|1306000_1307944_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	43.0	4.1e-125
WP_001833269.1|1308363_1310835_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.2	1.8e-96
>prophage 83
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1319146	1327836	2109726		Streptococcus_virus(20.0%)	8	NA	NA
WP_000283782.1|1319146_1320802_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	42.2	2.9e-47
WP_001041547.1|1320829_1321024_+	DUF3272 domain-containing protein	NA	NA	NA	NA	NA
WP_000114493.1|1321173_1321944_+	Fe-S cluster assembly ATPase SufC	NA	A0A2R8FG22	Brazilian_cedratvirus	28.5	2.5e-09
WP_000196405.1|1321971_1323234_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_000887731.1|1323244_1324471_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	1.5e-104
WP_001218480.1|1324457_1324898_+	SUF system NifU family Fe-S cluster assembly protein	NA	A0A2P1CJL8	Mycobacterium_phage	39.0	1.6e-13
WP_000797065.1|1324951_1326364_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_000719158.1|1326594_1327836_-	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	25.5	1.1e-17
>prophage 84
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1334234	1336460	2109726		Mycobacterium_phage(100.0%)	1	NA	NA
WP_050209537.1|1334234_1336460_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	49.9	4.8e-85
>prophage 85
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1342842	1349745	2109726		Bodo_saltans_virus(50.0%)	5	NA	NA
WP_000627748.1|1342842_1344336_+	SAM-dependent DNA methyltransferase	NA	A0A2H4UVB0	Bodo_saltans_virus	31.8	3.0e-27
WP_000756187.1|1344348_1345470_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_000260605.1|1345529_1345766_+	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
WP_000158366.1|1345762_1346176_+	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA	NA
WP_000526318.1|1346394_1349745_+	DEAD/DEAH box helicase family protein	NA	A0A2H4P9W3	Gordonia_phage	24.8	2.4e-11
>prophage 86
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1353439	1356541	2109726		Streptomyces_phage(100.0%)	1	NA	NA
WP_050213715.1|1353439_1356541_+	DNA polymerase III subunit alpha	NA	A0A291AWR1	Streptomyces_phage	32.6	2.0e-113
>prophage 87
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1360266	1360521	2109726		Streptococcus_phage(100.0%)	1	NA	NA
WP_000536835.1|1360266_1360521_-	phage repressor protein	NA	B3GVX0	Streptococcus_phage	61.2	3.3e-19
>prophage 88
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1371016	1371775	2109726		Planktothrix_phage(100.0%)	1	NA	NA
WP_000173363.1|1371016_1371775_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.8	1.7e-26
>prophage 89
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1381830	1396628	2109726	bacteriocin,protease	Streptococcus_phage(63.64%)	16	NA	NA
WP_000969463.1|1381830_1382916_+	agmatine deiminase	NA	M1HES8	Acanthocystis_turfacea_Chlorella_virus	47.5	4.1e-90
WP_001246755.1|1382925_1383801_+	N-carbamoylputrescine amidase	NA	M1H5W0	Paramecium_bursaria_Chlorella_virus	50.0	1.1e-77
WP_114865908.1|1383981_1384791_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_000602452.1|1385062_1385284_+|bacteriocin	SP_0924 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_000745373.1|1385337_1386009_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001025729.1|1386241_1387150_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	27.7	5.2e-06
WP_000745387.1|1387146_1387608_+	signal peptidase II	NA	NA	NA	NA	NA
WP_000403213.1|1387597_1388485_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_114865909.1|1388487_1390371_+	MBL fold metallo-hydrolase	NA	Q332B9	Clostridium_botulinum_C_phage	23.7	9.5e-10
WP_074017610.1|1390450_1391581_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.4	1.9e-114
WP_000254674.1|1391590_1392853_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	64.0	7.2e-139
WP_000689706.1|1392856_1393654_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	50.2	8.0e-59
WP_000033362.1|1393873_1394512_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	68.1	9.8e-76
WP_000806706.1|1394508_1395399_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	51.4	1.4e-72
WP_000358228.1|1395438_1395756_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
WP_001166880.1|1395758_1396628_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	76.1	2.7e-116
>prophage 90
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1403308	1405999	2109726	transposase	Erwinia_phage(50.0%)	2	NA	NA
WP_000658183.1|1403308_1404277_+	phosphate starvation-inducible protein PhoH	NA	W8D063	Erwinia_phage	47.9	5.9e-48
WP_001837384.1|1404652_1405999_-|transposase	IS1380-like element ISSpn5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	5.8e-78
>prophage 91
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1410727	1415984	2109726		Streptococcus_phage(33.33%)	5	NA	NA
WP_054383013.1|1410727_1412968_+	DNA internalization-related competence protein ComEC/Rec2	NA	M1PSD2	Streptococcus_phage	53.3	6.8e-47
WP_001808514.1|1413146_1413335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000939895.1|1413367_1413955_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	6.1e-16
WP_050213701.1|1413958_1415143_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000848180.1|1415453_1415984_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	32.1	2.4e-11
>prophage 92
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1419163	1430854	2109726		Bacillus_phage(20.0%)	12	NA	NA
WP_000757743.1|1419163_1421272_+	endo-beta-N-acetylglucosaminidase	NA	A0A143FPM9	Bacillus_phage	42.6	9.0e-25
WP_000006695.1|1421332_1422988_-	fibronectin-binding protein PavA	NA	A0A1J0F9J4	Only_Syngen_Nebraska_virus	36.5	4.7e-05
WP_000275156.1|1423092_1423590_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_000378154.1|1423570_1423966_+	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_114865910.1|1423982_1424882_+	GTPase Era	NA	NA	NA	NA	NA
WP_001114579.1|1424930_1425755_+	DNA-formamidopyrimidine glycosylase	NA	G3MA33	Bacillus_virus	34.5	1.6e-30
WP_050311661.1|1425754_1426360_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_000136127.1|1426346_1427546_+	multidrug efflux MFS transporter	NA	NA	NA	NA	NA
WP_001810029.1|1427545_1427695_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_000282517.1|1427734_1427968_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_114865911.1|1428069_1430424_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	40.6	6.8e-90
WP_044813178.1|1430386_1430854_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	59.4	2.1e-43
>prophage 93
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1440489	1446487	2109726		Tupanvirus(50.0%)	7	NA	NA
WP_114865912.1|1440489_1441869_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L277	Tupanvirus	36.0	3.4e-33
WP_000393812.1|1441878_1442424_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_000520411.1|1442435_1442750_+	hypothetical protein	NA	NA	NA	NA	NA
WP_044788748.1|1442766_1443459_+	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
WP_000021242.1|1443535_1444027_+	DUF536 domain-containing protein	NA	NA	NA	NA	NA
WP_000440254.1|1444124_1444715_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_000801726.1|1444723_1446487_+	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	22.2	3.0e-05
>prophage 94
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1470992	1485357	2109726		Klebsiella_phage(16.67%)	17	NA	NA
WP_000068143.1|1470992_1471583_+	thymidine kinase	NA	A0A0K1Y4R8	Klebsiella_phage	48.4	1.4e-47
WP_001028801.1|1471579_1472659_+	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_000761910.1|1472658_1473498_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_000567066.1|1473481_1474084_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_000942928.1|1474085_1474517_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000575519.1|1474578_1475835_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.1	3.3e-99
WP_000356095.1|1475842_1476817_+	nucleoid-associated protein	NA	NA	NA	NA	NA
WP_000476375.1|1476816_1477431_+	lysozyme family protein	NA	A0A1W6JSC2	Bacillus_phage	42.7	5.8e-25
WP_001227738.1|1477504_1478479_+	DUF1002 domain-containing protein	NA	NA	NA	NA	NA
WP_001863153.1|1478552_1480184_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A1X9I6F4	Streptococcus_phage	72.2	1.2e-191
WP_000710809.1|1480397_1480631_+	hypothetical protein	NA	NA	NA	NA	NA
WP_114865914.1|1480921_1481140_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_078149404.1|1481143_1481347_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050213877.1|1481533_1482559_+	iron-siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001244693.1|1482548_1483556_+	iron ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	26.4	7.6e-22
WP_001180357.1|1483555_1484563_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_000677519.1|1484562_1485357_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.0	1.9e-15
>prophage 95
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1489905	1494164	2109726	transposase	unidentified_phage(33.33%)	3	NA	NA
WP_001155321.1|1489905_1490859_+|transposase	IS30-like element ISSpn8 family transposase	transposase	H7BWC8	unidentified_phage	35.2	1.6e-34
WP_050213920.1|1490873_1491548_+	replisome organizer	NA	A0A1S5SAV1	Streptococcus_phage	48.1	3.9e-22
WP_000031842.1|1492484_1494164_+	recombinase family protein	NA	A0A2H4J3Q1	uncultured_Caudovirales_phage	25.6	2.2e-34
>prophage 96
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1503101	1503554	2109726		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_001808559.1|1503101_1503554_+	hypothetical protein	NA	A0A1B1IUG5	uncultured_Mediterranean_phage	43.0	6.6e-10
>prophage 97
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1508218	1511122	2109726		Streptococcus_phage(50.0%)	3	NA	NA
WP_047499378.1|1508218_1509427_+	enolase	NA	W6LP63	Streptococcus_phage	28.5	1.2e-34
WP_000368610.1|1509419_1510313_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_000588707.1|1510309_1511122_+	transketolase	NA	A0A2K9L6P9	Tupanvirus	30.2	6.3e-19
>prophage 98
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1522745	1523738	2109726		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001240822.1|1522745_1523738_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.9	1.0e-15
>prophage 99
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1527696	1527927	2109726		Marinitoga_camini_virus(100.0%)	1	NA	NA
WP_114865919.1|1527696_1527927_+	helix-turn-helix transcriptional regulator	NA	A0A142LP08	Marinitoga_camini_virus	38.5	4.2e-05
>prophage 100
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1539004	1541877	2109726		Helicobacter_phage(50.0%)	2	NA	NA
WP_114865920.1|1539004_1540765_+	DNA primase	NA	A0A1S5RH72	Helicobacter_phage	28.8	2.5e-44
WP_050079521.1|1540767_1541877_+	RNA polymerase sigma factor RpoD	NA	F4YCU2	Synechococcus_phage	38.1	5.9e-36
>prophage 101
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1554568	1563092	2109726	transposase	Bacillus_phage(33.33%)	9	NA	NA
WP_050308915.1|1554568_1556860_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.1	9.5e-129
WP_000286922.1|1556902_1557583_+	JAB domain-containing protein	NA	NA	NA	NA	NA
WP_050090332.1|1557579_1558269_-	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	NA	NA	NA	NA
WP_000653403.1|1558286_1558928_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_114865922.1|1559205_1560462_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	93.1	1.3e-225
WP_088788483.1|1560495_1560648_-	DUF4649 family protein	NA	NA	NA	NA	NA
WP_000863509.1|1560655_1561003_-	DUF1831 domain-containing protein	NA	NA	NA	NA	NA
WP_000639669.1|1561007_1562123_-	cysteine desulfurase	NA	NA	NA	NA	NA
WP_001283813.1|1562132_1563092_-	ribose-phosphate diphosphokinase	NA	A0A2K9L2G2	Tupanvirus	32.8	9.3e-38
>prophage 102
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1573622	1582336	2109726		Streptococcus_phage(25.0%)	7	NA	NA
WP_000592059.1|1573622_1574471_-	YitT family protein	NA	M1Q1P6	Streptococcus_phage	46.5	1.4e-64
WP_061748363.1|1574612_1575452_+	DegV family protein	NA	NA	NA	NA	NA
WP_001284639.1|1575558_1575834_+	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	66.3	9.2e-23
WP_050090072.1|1576259_1578161_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.0	7.5e-55
WP_050079493.1|1578163_1579027_+	MutR family transcriptional regulator	NA	NA	NA	NA	NA
WP_050079491.1|1579106_1580285_+	MFS transporter	NA	NA	NA	NA	NA
WP_001042594.1|1580377_1582336_+	NAD-dependent DNA ligase LigA	NA	A0A1W6DX16	Sphingobium_phage	35.9	6.0e-100
>prophage 103
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1593513	1597059	2109726	integrase	Streptococcus_phage(100.0%)	4	1586982:1586998	1623450:1623466
1586982:1586998	attL	TATTTCATTTCACTATA	NA	NA	NA	NA
WP_050090069.1|1593513_1594629_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	50.5	1.4e-72
WP_000131075.1|1594625_1595072_-	YueI family protein	NA	NA	NA	NA	NA
WP_000022813.1|1595235_1596540_+	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	94.5	4.7e-234
WP_001817933.1|1596678_1597059_-|integrase	tyrosine-type recombinase/integrase	integrase	W6LMU7	Streptococcus_phage	73.6	8.0e-41
1623450:1623466	attR	TATAGTGAAATGAAATA	NA	NA	NA	NA
>prophage 104
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1601544	1605195	2109726		Bacillus_virus(100.0%)	1	NA	NA
WP_000767250.1|1601544_1605195_+	helicase-exonuclease AddAB subunit AddA	NA	G3MA40	Bacillus_virus	25.3	2.0e-19
>prophage 105
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1620859	1624769	2109726		Cafeteria_roenbergensis_virus(50.0%)	3	NA	NA
WP_000201123.1|1620859_1621639_+	ribonuclease HII	NA	E3T5H8	Cafeteria_roenbergensis_virus	42.0	2.8e-24
WP_000392548.1|1621654_1623205_+	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA	NA
WP_000817882.1|1623698_1624769_+	tyrosine recombinase XerS	NA	A0A1B1IQT7	uncultured_Mediterranean_phage	29.9	3.1e-05
>prophage 106
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1634435	1635089	2109726		Beluga_whale_alphaherpesvirus(100.0%)	1	NA	NA
WP_000401326.1|1634435_1635089_-	uracil-DNA glycosylase	NA	A0A286RUF9	Beluga_whale_alphaherpesvirus	38.8	9.5e-34
>prophage 107
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1645525	1649134	2109726		Enterococcus_phage(66.67%)	3	NA	NA
WP_000259249.1|1645525_1645744_+	glutaredoxin-like protein NrdH	NA	A0A0M7REK7	Lactobacillus_phage	45.9	2.0e-12
WP_000523249.1|1645824_1647984_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	62.7	6.1e-263
WP_000451374.1|1648171_1649134_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	68.7	1.2e-128
>prophage 108
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1661054	1663685	2109726		Tupanvirus(50.0%)	2	NA	NA
WP_001047216.1|1661054_1662878_-	elongation factor 4	NA	A0A2K9L2P9	Tupanvirus	40.9	8.3e-19
WP_000133333.1|1662956_1663685_-	serine/threonine protein phosphatase	NA	A0A0N9SH20	Staphylococcus_phage	26.1	2.7e-05
>prophage 109
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1667654	1669761	2109726		Moumouvirus(50.0%)	2	NA	NA
WP_000417502.1|1667654_1668995_-	exodeoxyribonuclease VII large subunit	NA	M1NLU2	Moumouvirus	29.7	2.6e-33
WP_001181378.1|1669122_1669761_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	39.9	8.4e-35
>prophage 110
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1675860	1683914	2109726		Bacillus_phage(50.0%)	7	NA	NA
WP_001152989.1|1675860_1678329_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.5	2.7e-105
WP_000204727.1|1678522_1679509_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_001812387.1|1680467_1680722_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_000208080.1|1680723_1680966_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001289493.1|1681056_1681866_-	MBL fold metallo-hydrolase	NA	A0A0C5AFC1	Paenibacillus_phage	39.0	1.8e-34
WP_000886210.1|1681867_1683217_-	cell wall metabolism sensor histidine kinase VicK	NA	W8CYF6	Bacillus_phage	34.6	1.8e-34
WP_000722076.1|1683209_1683914_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.8	2.8e-39
>prophage 111
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1688073	1688625	2109726		Penguinpox_virus(100.0%)	1	NA	NA
WP_001284128.1|1688073_1688625_+	phosphopantothenoylcysteine decarboxylase	NA	A0A068EHP1	Penguinpox_virus	37.6	3.1e-25
>prophage 112
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1697425	1699802	2109726		Pithovirus(50.0%)	2	NA	NA
WP_001096313.1|1697425_1698166_+	amino acid ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	27.3	2.8e-18
WP_000096161.1|1698314_1699802_+	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	32.8	6.5e-70
>prophage 113
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1706279	1711691	2109726		Acanthamoeba_polyphaga_lentillevirus(33.33%)	4	NA	NA
WP_000661498.1|1706279_1706978_-	ribonuclease III	NA	J2YAN1	Acanthamoeba_polyphaga_lentillevirus	33.8	3.9e-25
WP_000931187.1|1707295_1708282_-	GMP reductase	NA	G3MBI2	Bacillus_virus	72.5	8.2e-138
WP_162797634.1|1708456_1709773_-	McrC family protein	NA	NA	NA	NA	NA
WP_001042421.1|1709759_1711691_-	McrB family protein	NA	K4I1H4	Acidithiobacillus_phage	33.7	1.8e-16
>prophage 114
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1717426	1784627	2109726	protease,transposase,holin	Bacillus_phage(26.67%)	60	NA	NA
WP_000179638.1|1717426_1719514_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	37.6	3.9e-105
WP_001812710.1|1719680_1720724_-	TIGR00341 family protein	NA	NA	NA	NA	NA
WP_001155321.1|1721327_1722281_+|transposase	IS30-like element ISSpn8 family transposase	transposase	H7BWC8	unidentified_phage	35.2	1.6e-34
WP_000705304.1|1722852_1723701_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	39.5	4.2e-34
WP_000643970.1|1723796_1724486_-	NTP transferase domain-containing protein	NA	A0A127AW70	Bacillus_phage	45.0	3.4e-05
WP_000837609.1|1724497_1725376_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000411210.1|1725365_1726235_-	phosphotransferase family protein	NA	NA	NA	NA	NA
WP_000609894.1|1726251_1727274_-	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_000638502.1|1727278_1727986_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000835899.1|1728321_1729809_+	type IV teichoic acid flippase TacF	NA	NA	NA	NA	NA
WP_000811874.1|1729818_1730622_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	27.1	5.3e-10
WP_001199652.1|1730623_1731433_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	30.3	9.1e-10
WP_001126409.1|1731707_1734884_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_000166701.1|1735196_1736276_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.9	6.3e-59
WP_001293845.1|1736325_1737249_-	aspartate carbamoyltransferase catalytic subunit	NA	M1HGA5	Paramecium_bursaria_Chlorella_virus	31.7	8.7e-25
WP_000850024.1|1737267_1737789_-	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA	NA
WP_000244451.1|1737999_1738629_-	endonuclease III	NA	NA	NA	NA	NA
WP_000773226.1|1738628_1739171_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_114865932.1|1739340_1739658_+	helicase BlpT	NA	NA	NA	NA	NA
WP_001812708.1|1739896_1741456_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A1B0RXA0	Streptococcus_phage	27.5	9.3e-11
WP_000895736.1|1741604_1742504_-|protease	zinc metalloprotease HtpX	protease	NA	NA	NA	NA
WP_000219823.1|1742505_1743066_-	LemA family protein	NA	NA	NA	NA	NA
WP_000801941.1|1743159_1743873_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_000808288.1|1744175_1745459_+	uracil transporter	NA	Q9KX94	Enterobacteria_phage	35.3	4.0e-60
WP_000863651.1|1745653_1747225_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_114865933.1|1747236_1747569_-	putative DNA-binding protein	NA	NA	NA	NA	NA
WP_001246397.1|1747659_1748025_-	DUF1934 domain-containing protein	NA	NA	NA	NA	NA
WP_001003498.1|1748108_1749413_+	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	30.2	1.7e-26
WP_000023507.1|1749425_1750232_+	sugar-phosphatase	NA	NA	NA	NA	NA
WP_000002875.1|1750442_1752218_-	DUF4365 domain-containing protein	NA	NA	NA	NA	NA
WP_000868700.1|1752703_1753885_-	N-acetylmuramoyl-L-alanine amidase family protein	NA	NA	NA	NA	NA
WP_000722391.1|1753897_1755118_-	peptidase C14	NA	NA	NA	NA	NA
WP_000427010.1|1755211_1756066_+	Rgg/GadR/MutR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001068669.1|1756744_1757092_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_050204734.1|1757210_1757540_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	38.7	4.8e-10
WP_000712097.1|1757533_1757908_-	fluoride efflux transporter CrcB	NA	NA	NA	NA	NA
WP_000362440.1|1757904_1758171_-	chorismate mutase	NA	NA	NA	NA	NA
WP_001162128.1|1758286_1758730_-	flavodoxin	NA	NA	NA	NA	NA
WP_000401770.1|1758833_1759769_+	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA	NA
WP_001808393.1|1759822_1760107_+	type B 50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_000028151.1|1760163_1760382_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000199534.1|1761488_1762835_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_161801419.1|1763513_1764083_-	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	38.5	9.5e-14
WP_000424224.1|1766102_1766552_-	DUF386 family protein	NA	NA	NA	NA	NA
WP_001000318.1|1767056_1767512_-	HIT domain-containing protein	NA	NA	NA	NA	NA
WP_000272434.1|1767533_1768994_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000239901.1|1769053_1770631_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_050213916.1|1770699_1772139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000577773.1|1772152_1773082_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_001071050.1|1773092_1774025_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_000448317.1|1774025_1774712_-	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
WP_078063964.1|1775427_1776186_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001165927.1|1776363_1776972_+	DUF624 domain-containing protein	NA	NA	NA	NA	NA
WP_088778796.1|1777206_1778558_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	50.9	5.9e-62
WP_000807140.1|1778852_1778990_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050103422.1|1779123_1780443_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000356590.1|1780445_1781186_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.8	7.0e-09
WP_001058021.1|1782007_1783411_-	phosphotransferase	NA	NA	NA	NA	NA
WP_000807141.1|1783700_1783838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000821289.1|1784039_1784627_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 115
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1789104	1792579	2109726		Bacillus_phage(100.0%)	2	NA	NA
WP_000828830.1|1789104_1790853_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.7	1.6e-48
WP_114865936.1|1790854_1792579_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.9	6.0e-43
>prophage 116
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1806793	1820589	2109726	tRNA	Streptococcus_phage(50.0%)	11	NA	NA
WP_000065990.1|1806793_1807132_-	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	51.8	6.4e-26
WP_050213521.1|1807142_1808246_-	prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_001269866.1|1808255_1809422_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	35.2	2.1e-39
WP_000702159.1|1809431_1810499_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_000762512.1|1810517_1811372_-	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_044792818.1|1811361_1812039_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	66.8	1.1e-82
WP_044792824.1|1812035_1813199_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	64.6	2.7e-140
WP_001237588.1|1813883_1815518_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050257706.1|1815498_1816248_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.1	3.1e-28
WP_114865937.1|1816426_1817881_+	alpha-amylase	NA	NA	NA	NA	NA
WP_000811743.1|1817970_1820589_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	33.8	3.7e-60
>prophage 117
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1823707	1832967	2109726	protease	Mycoplasma_phage(40.0%)	10	NA	NA
WP_000753797.1|1823707_1824514_-	ABC transporter permease	NA	Q6GZ02	Mycoplasma_phage	26.5	1.9e-12
WP_000742923.1|1824494_1825652_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	40.4	5.8e-34
WP_000116180.1|1825812_1826718_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
WP_000152231.1|1826829_1827582_-|protease	YhfC family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000360301.1|1827591_1828323_-	acetolactate decarboxylase	NA	NA	NA	NA	NA
WP_114865938.1|1828464_1829736_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	47.7	5.8e-104
WP_050079124.1|1829755_1830571_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000946463.1|1830727_1831381_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_000128641.1|1831392_1832151_-	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.6	6.7e-15
WP_000109217.1|1832163_1832967_-	phosphate ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.7	9.6e-12
>prophage 118
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1850781	1871589	2109726	integrase	Bacillus_virus(20.0%)	18	1857263:1857278	1876399:1876414
WP_000058035.1|1850781_1851606_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	57.9	8.2e-75
WP_000283115.1|1851602_1853063_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	43.5	2.3e-104
WP_000797184.1|1853178_1853667_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001107505.1|1853656_1853866_-	helix-turn-helix transcriptional regulator	NA	A0A1V0E021	Clostridioides_phage	49.1	4.1e-07
WP_000640911.1|1854250_1854703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078102640.1|1854994_1855786_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	36.4	2.7e-22
WP_078135328.1|1857184_1857496_-	hypothetical protein	NA	NA	NA	NA	NA
1857263:1857278	attL	TTTATATTGCTTATAT	NA	NA	NA	NA
WP_050095734.1|1857510_1858797_-	U32 family peptidase	NA	Q6DW11	Phage_TP	31.3	2.1e-40
WP_001262531.1|1859420_1859603_+	ApaLI family restriction endonuclease	NA	NA	NA	NA	NA
WP_078064042.1|1859612_1859978_+	ApaLI family restriction endonuclease	NA	NA	NA	NA	NA
WP_000217306.1|1859974_1861153_+	site-specific DNA-methyltransferase	NA	A0A0H3UZ66	Geobacillus_virus	37.4	7.0e-43
WP_061367073.1|1862402_1863767_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.3e-11
WP_001141950.1|1863754_1864450_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_000368966.1|1864449_1865034_-	MptD family putative ECF transporter S component	NA	NA	NA	NA	NA
WP_000657827.1|1865044_1866766_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.1e-28
WP_000708385.1|1866749_1868504_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.2	4.1e-23
WP_061632155.1|1868663_1869656_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000047743.1|1870380_1871589_-|integrase	site-specific integrase	integrase	A0A1S5S7K9	Streptococcus_phage	27.0	5.3e-22
1876399:1876414	attR	TTTATATTGCTTATAT	NA	NA	NA	NA
>prophage 119
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1876392	1880426	2109726		Thermus_virus(50.0%)	3	NA	NA
WP_044814780.1|1876392_1877697_-	DNA (cytosine-5-)-methyltransferase	NA	A7XXH6	Thermus_virus	33.3	6.3e-37
WP_000033448.1|1877762_1878701_-	HaeIII family restriction endonuclease	NA	NA	NA	NA	NA
WP_000065723.1|1878863_1880426_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.8	1.4e-19
>prophage 120
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1883954	1892794	2109726	holin	Streptococcus_phage(37.5%)	12	NA	NA
WP_000290649.1|1883954_1884590_-|holin	1-alkyl-2-acetylglycerophosphocholine esterase	holin	A0A2K9L661	Tupanvirus	28.2	4.3e-07
WP_000972934.1|1884591_1885419_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_001860551.1|1885776_1886493_-	CapA family protein	NA	A0A0N9SJ77	Staphylococcus_phage	31.6	1.2e-26
WP_114865939.1|1887015_1887627_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	41.7	2.4e-15
WP_000855732.1|1887671_1888400_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_114865940.1|1888438_1889350_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	51.5	1.0e-89
WP_000926599.1|1889415_1889640_-	DUF4059 family protein	NA	NA	NA	NA	NA
WP_000590986.1|1889717_1890461_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.0	1.6e-29
WP_001103449.1|1890460_1891261_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_000889093.1|1891418_1891775_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	57.3	1.2e-33
WP_001170346.1|1891787_1892300_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	55.6	1.3e-46
WP_000405832.1|1892299_1892794_-	GNAT family N-acetyltransferase	NA	M1PSC3	Streptococcus_phage	52.1	1.9e-42
>prophage 121
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1898304	1900172	2109726		Lactobacillus_phage(100.0%)	2	NA	NA
WP_000915925.1|1898304_1898910_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	54.2	7.7e-54
WP_050099082.1|1898927_1900172_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	52.7	3.8e-55
>prophage 122
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1905134	1905977	2109726		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001099678.1|1905134_1905977_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	40.2	1.3e-51
>prophage 123
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1909300	1913043	2109726		Diachasmimorpha_longicaudata_entomopoxvirus(50.0%)	2	NA	NA
WP_000850588.1|1909300_1910383_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.0	5.2e-37
WP_001040724.1|1911846_1913043_-	elongation factor Tu	NA	A0A076FFS6	Aureococcus_anophage	29.6	7.3e-32
>prophage 124
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1918424	1922359	2109726		Streptococcus_phage(50.0%)	4	NA	NA
WP_044793447.1|1918424_1920143_+	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	83.2	1.5e-272
WP_000434643.1|1920253_1920601_+	thioredoxin	NA	NA	NA	NA	NA
WP_000759192.1|1920880_1921717_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000891772.1|1921729_1922359_-	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.3	1.2e-28
>prophage 125
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1933148	1934156	2109726	transposase	Faecalibacterium_phage(100.0%)	1	NA	NA
WP_001179434.1|1933148_1934156_-|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	35.4	2.7e-35
>prophage 126
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1940917	1944016	2109726		Choristoneura_rosaceana_nucleopolyhedrovirus(100.0%)	1	NA	NA
WP_050137099.1|1940917_1944016_-	DEAD/DEAH box helicase	NA	S5NA49	Choristoneura_rosaceana_nucleopolyhedrovirus	27.9	3.2e-39
>prophage 127
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1957752	1961990	2109726	tRNA	Catovirus(33.33%)	5	NA	NA
WP_114865943.1|1957752_1959153_-	bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase	NA	A0A1V0S9I2	Catovirus	44.6	2.7e-25
WP_000068664.1|1959447_1959687_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_000609607.1|1959718_1960189_-	single-stranded DNA-binding protein	NA	A0A2H4J1H8	uncultured_Caudovirales_phage	67.7	2.4e-55
WP_001151785.1|1960200_1960491_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_162797636.1|1960643_1961990_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	31.2	4.8e-56
>prophage 128
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1965182	1976637	2109726	tRNA	Streptococcus_phage(20.0%)	9	NA	NA
WP_000697775.1|1965182_1965911_-	peroxide stress protein YaaA	NA	A0A1X9I5I0	Streptococcus_phage	39.0	2.6e-40
WP_000508269.1|1965989_1966154_-	YczI family protein	NA	NA	NA	NA	NA
WP_000822864.1|1966320_1967916_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000412214.1|1967927_1968338_-	peptide deformylase	NA	A0A2I7R224	Vibrio_phage	32.2	1.3e-09
WP_001277402.1|1968453_1969245_-	glutathione-dependent disulfide-bond oxidoreductase	NA	NA	NA	NA	NA
WP_000032458.1|1969257_1971954_-	cation-translocating P-type ATPase	NA	M1I547	Acanthocystis_turfacea_Chlorella_virus	28.6	8.1e-71
WP_000813920.1|1972257_1973442_+	CDF family manganese efflux transporter MntE	NA	NA	NA	NA	NA
WP_001279133.1|1973584_1975456_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	31.1	3.0e-56
WP_001138800.1|1975452_1976637_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	31.9	5.2e-38
>prophage 129
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	1982013	2005401	2109726	protease,transposase,holin	Streptococcus_phage(38.46%)	23	NA	NA
WP_000081003.1|1982013_1982982_+	NAD(P)/FAD-dependent oxidoreductase	NA	Q9JRK7	Streptococcus_phage	100.0	2.8e-66
WP_000011306.1|1983014_1983926_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	99.7	1.5e-154
WP_001231086.1|1983922_1984900_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	100.0	1.2e-184
WP_000163035.1|1984896_1985787_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.8	6.7e-06
WP_001140412.1|1985838_1986219_-	RidA family protein	NA	NA	NA	NA	NA
WP_000422599.1|1986229_1986817_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_000106346.1|1986825_1988058_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.0	4.2e-131
WP_002205327.1|1988259_1988766_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	43.1	1.0e-27
WP_044813102.1|1988895_1989414_-	DNA starvation/stationary phase protection protein	NA	NA	NA	NA	NA
WP_001837384.1|1990025_1991372_-|transposase	IS1380-like element ISSpn5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	5.8e-78
WP_002205331.1|1991617_1993123_-|holin	choline binding-anchored murein hydrolase LytC	holin	NA	NA	NA	NA
WP_000087897.1|1993160_1993919_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_000221594.1|1994016_1994694_-	DnaD domain-containing protein	NA	A0A1X9I617	Streptococcus_phage	41.3	2.9e-09
WP_001122705.1|1994702_1995647_-	homoserine O-succinyltransferase	NA	NA	NA	NA	NA
WP_050102921.1|1995828_1996341_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	47.3	9.1e-32
WP_001287234.1|1996427_1997186_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_050218509.1|1997393_1997564_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000229961.1|1997685_1998816_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	33.2	4.7e-20
WP_050118993.1|1999265_1999841_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	35.9	2.5e-22
WP_000940733.1|1999840_2000629_-	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_000671133.1|2000892_2002467_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.8	1.9e-59
WP_050213907.1|2002665_2003892_-	OFA family MFS transporter	NA	NA	NA	NA	NA
WP_000958925.1|2004084_2005401_+	FAD-containing oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	44.1	2.2e-98
>prophage 130
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	2009153	2009987	2109726	transposase	Bacillus_phage(100.0%)	1	NA	NA
WP_162797624.1|2009153_2009987_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	48.9	1.9e-58
>prophage 131
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	2016870	2018857	2109726		Oenococcus_phage(50.0%)	2	NA	NA
WP_050213768.1|2016870_2017836_-	glycosyltransferase family 2 protein	NA	V5USA4	Oenococcus_phage	50.0	3.3e-75
WP_001156528.1|2017837_2018857_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	48.1	6.1e-88
>prophage 132
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	2026263	2032183	2109726		Yellowstone_lake_phycodnavirus(50.0%)	2	NA	NA
WP_000621469.1|2026263_2029410_+	DEAD/DEAH box helicase	NA	A0A0P0YMN2	Yellowstone_lake_phycodnavirus	32.2	2.4e-50
WP_000360050.1|2029846_2032183_-	cation-translocating P-type ATPase	NA	M1HRW9	Paramecium_bursaria_Chlorella_virus	26.2	2.1e-35
>prophage 133
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	2037076	2040043	2109726	tRNA	Tupanvirus(50.0%)	2	NA	NA
WP_000608356.1|2037076_2039020_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	39.1	5.6e-122
WP_000887954.1|2039068_2040043_-	HAMP domain-containing histidine kinase	NA	B5LWN0	Feldmannia_species_virus	26.6	1.4e-09
>prophage 134
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	2046939	2053778	2109726		Orpheovirus(25.0%)	4	NA	NA
WP_114865948.1|2046939_2049162_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	35.8	2.5e-09
WP_000690854.1|2050120_2050750_+	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	67.1	1.6e-83
WP_000199265.1|2050872_2052765_-	endopeptidase	NA	E3T4I7	Cafeteria_roenbergensis_virus	29.7	2.9e-67
WP_000619143.1|2053055_2053778_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.6	4.2e-14
>prophage 135
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	2059003	2059705	2109726		Planktothrix_phage(100.0%)	1	NA	NA
WP_000323371.1|2059003_2059705_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	2.4e-35
>prophage 136
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	2064428	2067221	2109726	tRNA	Klosneuvirus(100.0%)	1	NA	NA
WP_114865949.1|2064428_2067221_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	26.7	1.5e-80
>prophage 137
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	2088811	2090329	2109726		Vibrio_phage(100.0%)	1	NA	NA
WP_000477445.1|2088811_2090329_-	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	46.5	1.4e-06
>prophage 138
NZ_CP031246	Streptococcus pneumoniae strain M26368 chromosome, complete genome	2109726	2104893	2109459	2109726		Acidianus_filamentous_virus(50.0%)	4	NA	NA
WP_114865950.1|2104893_2106909_-	ATP-dependent DNA helicase RecG	NA	B2CRI7	Acidianus_filamentous_virus	26.8	1.2e-05
WP_000648081.1|2106927_2108031_-	alanine racemase	NA	NA	NA	NA	NA
WP_001242366.1|2108020_2108389_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_000864060.1|2108427_2109459_-	3-deoxy-7-phosphoheptulonate synthase	NA	S4W5F1	Pandoravirus	34.3	5.9e-46
