The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP022594	Mycoplasma bovis strain NADC58 chromosome, complete genome	1098413	3462	78726	1098413	tRNA,transposase	Bodo_saltans_virus(14.29%)	55	NA	NA
WP_115265524.1|3462_4707_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	5.3e-09
WP_014829846.1|4709_6029_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_013954491.1|6300_7086_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_013954492.1|7087_7879_+	alpha/beta hydrolase	NA	G9E3U1	Emiliania_huxleyi_virus	19.7	7.8e-06
WP_115265595.1|7930_9112_-	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA	NA
WP_115276487.1|9104_10151_-	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	26.2	1.2e-14
WP_013456070.1|10220_11258_-	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	25.9	9.2e-15
WP_013456410.1|11235_12105_-	deacetylase SIR2	NA	NA	NA	NA	NA
WP_013954496.1|12106_12451_-	calcium-binding protein	NA	NA	NA	NA	NA
WP_013456398.1|12434_13436_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_013456108.1|13620_14424_+	hypothetical protein	NA	NA	NA	NA	NA
WP_115293111.1|14474_15893_-	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_013456171.1|16006_16459_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013456518.1|16567_18172_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	26.4	1.2e-10
WP_013954498.1|18164_20153_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_013456299.1|20152_21130_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_013456248.1|21407_22070_+	deoxynucleoside kinase	NA	Q5ULP7	Lactobacillus_virus	27.6	2.9e-06
WP_013456161.1|22071_22725_+	deoxynucleoside kinase	NA	Q5ULP7	Lactobacillus_virus	26.2	1.9e-05
WP_013954499.1|22932_24636_-	peptidase S41	NA	NA	NA	NA	NA
WP_013456349.1|24906_25812_-	pseudouridine-5'-phosphate glycosidase	NA	NA	NA	NA	NA
WP_013456608.1|25814_26714_-	sugar kinase	NA	NA	NA	NA	NA
WP_078086163.1|27021_28050_-|transposase	IS30-like element ISMbov1 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.3	6.5e-21
WP_013456023.1|28411_29242_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_115276488.1|29275_31252_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_013954500.1|31251_32274_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.7	3.6e-27
WP_013456151.1|32380_32728_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954501.1|32702_34124_+	hypothetical protein	NA	NA	NA	NA	NA
WP_101456648.1|34470_35904_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_013456564.1|36277_37612_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	30.7	4.5e-06
WP_013456445.1|37604_39224_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.6	6.0e-13
WP_013456184.1|39231_40245_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_013954502.1|40246_41332_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_013954503.1|41340_44292_-	variable surface lipoprotein	NA	NA	NA	NA	NA
WP_115276489.1|44305_54286_-	PDxFFG protein	NA	NA	NA	NA	NA
WP_013954506.1|56020_57262_+|tRNA	class I tRNA ligase family protein	tRNA	A0A1V0SAQ2	Catovirus	30.9	5.3e-41
WP_013954507.1|57308_58010_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_013954508.1|57999_58584_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456379.1|58639_58789_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_014829857.1|58788_59025_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_013456192.1|59030_59630_+	transcription termination/antitermination protein NusG	NA	NA	NA	NA	NA
WP_078086167.1|60295_61897_+|transposase	IS1634-like element ISMbov3 family transposase	transposase	NA	NA	NA	NA
WP_013954511.1|62124_64335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954512.1|64492_65527_+	YihY/virulence factor BrkB family protein	NA	NA	NA	NA	NA
WP_013954513.1|65718_66441_+	UMP kinase	NA	NA	NA	NA	NA
WP_013954514.1|66440_66992_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_013954515.1|67260_68496_-	ComEC/Rec2 family competence protein	NA	NA	NA	NA	NA
WP_013954516.1|68573_69086_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101456642.1|69180_70179_-	NAD(P)-binding domain-containing protein	NA	NA	NA	NA	NA
WP_101456643.1|70193_70982_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	E4ZFQ0	Streptococcus_phage	25.2	2.0e-09
WP_075270978.1|70974_71736_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_075270979.1|71745_73083_-|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	tRNA	NA	NA	NA	NA
WP_013456626.1|73210_73885_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456534.1|73916_74927_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_162293106.1|75522_77124_-|transposase	IS1634-like element ISMbov3 family transposase	transposase	NA	NA	NA	NA
WP_115276490.1|77457_78726_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.2	2.0e-80
>prophage 2
NZ_CP022594	Mycoplasma bovis strain NADC58 chromosome, complete genome	1098413	85115	95818	1098413	tRNA,transposase	Faecalibacterium_phage(16.67%)	7	NA	NA
WP_078086171.1|85115_86144_+|transposase	IS30-like element ISMbov1 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.0	5.0e-21
WP_041309069.1|86346_87111_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954530.1|87103_88084_+	aspartate--ammonia ligase	NA	A0A1C9C5F0	Heterosigma_akashiwo_virus	40.6	8.1e-53
WP_013954531.1|88208_92585_+	PolC-type DNA polymerase III	NA	A0A0K2SUJ2	Clostridium_phage	31.8	6.2e-12
WP_013954532.1|92990_94214_+	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	35.1	1.5e-61
WP_013456569.1|94203_95169_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	40.9	3.6e-29
WP_013954533.1|95158_95818_+	uracil-DNA glycosylase	NA	A0A068EP41	Falconid_herpesvirus	36.4	1.6e-28
>prophage 3
NZ_CP022594	Mycoplasma bovis strain NADC58 chromosome, complete genome	1098413	141494	294416	1098413	tRNA,transposase	Mycoplasma_phage(12.9%)	114	NA	NA
WP_173022447.1|141494_143096_+|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
WP_078086163.1|143317_144346_-|transposase	IS30-like element ISMbov1 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.3	6.5e-21
WP_013456546.1|144863_145310_-	RpiB/LacA/LacB family sugar-phosphate isomerase	NA	NA	NA	NA	NA
WP_075271210.1|145465_147523_+	ATP-binding cassette domain-containing protein	NA	A0A1V0SE00	Indivirus	29.0	7.2e-11
WP_013456267.1|147500_147887_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456026.1|147915_148374_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_013455912.1|148376_148772_+	cytidine deaminase	NA	NA	NA	NA	NA
WP_013456544.1|148783_149656_+	GTPase Era	NA	NA	NA	NA	NA
WP_013456097.1|149689_150739_+	aminopeptidase P family protein	NA	NA	NA	NA	NA
WP_013456141.1|150856_152293_+|tRNA	proline--tRNA ligase	tRNA	A0A1V0SJ28	Klosneuvirus	37.9	1.1e-93
WP_013456293.1|152352_152721_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075271211.1|152836_154654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456555.1|154749_155448_+	LemA family protein	NA	NA	NA	NA	NA
WP_101456649.1|155630_158018_+	phosphoketolase family protein	NA	NA	NA	NA	NA
WP_101456650.1|158076_159918_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	19.1	2.1e-17
WP_013456016.1|160180_161593_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	68.7	1.2e-81
WP_013456380.1|161576_162413_+	ABC transporter permease	NA	Q6GZ02	Mycoplasma_phage	62.0	2.5e-87
WP_013456215.1|162405_163299_+	spermidine/putrescine ABC transporter permease	NA	Q6GZ01	Mycoplasma_phage	62.3	2.1e-92
WP_013455994.1|163285_165187_+	membrane protein	NA	Q6GZ00	Mycoplasma_phage	34.2	3.9e-80
WP_013456051.1|165411_165612_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_075271213.1|165675_167304_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075271214.1|167305_168442_+|tRNA	tRNA 4-thiouridine(8) synthase ThiI	tRNA	NA	NA	NA	NA
WP_013455960.1|168485_168764_-	hypothetical protein	NA	NA	NA	NA	NA
WP_143823108.1|168805_170287_-	BspA family leucine-rich repeat surface protein	NA	NA	NA	NA	NA
WP_081375324.1|170518_171868_-	DUF285 domain-containing protein	NA	NA	NA	NA	NA
WP_075271216.1|172616_175052_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075271217.1|175203_177693_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	39.9	5.8e-140
WP_075271218.1|177695_178556_+	bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	37.6	1.3e-33
WP_013954592.1|178655_179612_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_013954593.1|179615_180809_+	acetate/propionate family kinase	NA	NA	NA	NA	NA
WP_101456651.1|180824_181247_+	pantetheine-phosphate adenylyltransferase	NA	NA	NA	NA	NA
WP_101456652.1|181246_181828_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_101456653.1|181855_183352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_101456654.1|183488_184925_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_101456655.1|184993_185974_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101456656.1|186224_188018_+	molecular chaperone DnaK	NA	A0A0G2YAL1	Acanthamoeba_polyphaga_mimivirus	45.8	2.5e-129
WP_013954995.1|190122_191367_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	4.1e-09
WP_101456658.1|191460_192744_-|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_013954601.1|192902_193286_+	membrane protein	NA	NA	NA	NA	NA
WP_013954602.1|193423_194413_-	lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	32.9	1.8e-39
WP_075271077.1|194822_195623_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_013954605.1|195738_195900_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954606.1|196076_196529_+	hypothetical protein	NA	NA	NA	NA	NA
WP_115276493.1|196696_199120_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_115293112.1|200874_202551_-	RsmD family RNA methyltransferase	NA	A0A2K5B2C1	Erysipelothrix_phage	29.1	7.4e-30
WP_115276494.1|202607_203861_-	site-specific DNA-methyltransferase	NA	A0A2K5B2C1	Erysipelothrix_phage	29.2	8.8e-28
WP_173022853.1|203871_204264_-	type III restriction endonuclease subunit M	NA	NA	NA	NA	NA
WP_013954611.1|204391_205897_-	trigger factor	NA	NA	NA	NA	NA
WP_013954612.1|206263_206422_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954613.1|206550_207960_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101456648.1|209282_210716_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_115265597.1|210734_211724_-|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.8	2.8e-21
WP_115276495.1|213875_215864_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_013954618.1|216048_216435_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078086167.1|216790_218392_+|transposase	IS1634-like element ISMbov3 family transposase	transposase	NA	NA	NA	NA
WP_173022599.1|218451_218595_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101456648.1|218709_220143_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_013954619.1|220463_221381_-	5'-3' exonuclease	NA	A0A0N7ACJ6	Bacillus_phage	31.1	1.3e-31
WP_013954620.1|221382_224316_-	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	34.4	1.0e-87
WP_173022600.1|224824_224968_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078086174.1|225138_226740_+|transposase	IS1634-like element ISMbov3 family transposase	transposase	NA	NA	NA	NA
WP_173022442.1|228850_230230_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172792933.1|230175_232512_-	S8 family serine peptidase	NA	NA	NA	NA	NA
WP_078086163.1|235164_236193_-|transposase	IS30-like element ISMbov1 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.3	6.5e-21
WP_013954995.1|236843_238088_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	4.1e-09
WP_014829881.1|238579_240013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172792934.1|240650_242030_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041323925.1|241975_244291_-	S8 family serine peptidase	NA	NA	NA	NA	NA
WP_013954624.1|244465_244915_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954625.1|245236_247078_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_013954626.1|247064_247517_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_049773792.1|247627_249343_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954628.1|249486_250506_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954629.1|250506_251055_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_013455969.1|251122_251683_+	peptide deformylase	NA	NA	NA	NA	NA
WP_013954630.1|251695_253093_+	CvpA family protein	NA	NA	NA	NA	NA
WP_013954631.1|253206_255123_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	41.9	5.7e-119
WP_013954632.1|255136_257722_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	29.6	9.8e-90
WP_013954633.1|257863_258793_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_075271093.1|258794_259511_+	ribonuclease HIII	NA	NA	NA	NA	NA
WP_013954635.1|259698_260673_+	DNA cytosine methyltransferase	NA	R4TMW4	Halovirus	38.4	1.6e-48
WP_013954636.1|260665_261373_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456076.1|261842_262172_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954638.1|262414_263110_-	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_014829885.1|263093_264080_-	ribose-phosphate pyrophosphokinase	NA	A0A2K9L2G2	Tupanvirus	35.7	2.2e-42
WP_013954642.1|264297_265020_-	hypothetical protein	NA	NA	NA	NA	NA
WP_115293113.1|265647_266892_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_038582854.1|266969_267737_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954646.1|268422_269367_-	endonuclease	NA	NA	NA	NA	NA
WP_013954647.1|269465_271412_+	transketolase	NA	NA	NA	NA	NA
WP_013954648.1|271474_272029_-	inorganic diphosphatase	NA	A0A1B1ISK6	uncultured_Mediterranean_phage	39.1	2.1e-21
WP_013456603.1|272107_272377_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_013954649.1|272490_273078_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954650.1|273171_275340_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954651.1|275351_276734_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954652.1|276733_277069_+	HIT family protein	NA	B5LJ12	Mycobacterium_phage	33.8	3.6e-05
WP_013954653.1|277187_277886_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004024364.1|277939_278092_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_013954654.1|278225_278384_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456491.1|278557_279043_+	thiol peroxidase	NA	NA	NA	NA	NA
WP_013456378.1|279080_279317_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954655.1|279306_280371_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_013954656.1|280439_280724_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014829889.1|280745_282296_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SEZ7	Hokovirus	35.7	1.9e-80
WP_075270989.1|282298_283084_-|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
WP_013456627.1|283104_285294_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	33.5	1.0e-71
WP_013456572.1|285296_285539_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_013456283.1|285881_286469_+	guanylate kinase	NA	A0A0M5KCK5	Mollivirus	38.6	1.2e-08
WP_013456579.1|286474_287227_+	serine/threonine-protein phosphatase	NA	NA	NA	NA	NA
WP_013456514.1|287244_288243_+	serine/threonine protein kinase	NA	Q85453	Moloney_murine_sarcoma_virus	32.2	4.3e-17
WP_013456585.1|288254_289100_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_013455939.1|289086_289749_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_115265540.1|290611_292837_-	AAA family ATPase	NA	A0A2K9V9X6	Bandra_megavirus	26.7	2.3e-31
WP_013456112.1|292982_294416_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP022594	Mycoplasma bovis strain NADC58 chromosome, complete genome	1098413	301593	382724	1098413	tRNA,integrase,transposase	Enterobacteria_phage(14.29%)	55	301561:301620	348746:350087
301561:301620	attL	TAAACTAGGACAACAAAAGTAGACCTTAAATTTTTATTTTTTACAAAACTCCACTCACAA	NA	NA	NA	NA
WP_013954995.1|301593_302838_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	4.1e-09
WP_078086174.1|303642_305244_+|transposase	IS1634-like element ISMbov3 family transposase	transposase	NA	NA	NA	NA
WP_173022449.1|305310_306927_+	SAM-dependent DNA methyltransferase	NA	NA	NA	NA	NA
WP_115293114.1|306913_308161_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_013954660.1|308301_309690_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_075278710.1|309962_310493_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_013954669.1|311211_312180_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	29.2	3.8e-31
WP_078086164.1|312544_314146_-|transposase	IS1634-like element ISMbov3 family transposase	transposase	NA	NA	NA	NA
WP_081375095.1|314667_315129_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954672.1|315443_316601_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_013954673.1|317546_319166_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	39.8	5.9e-109
WP_075271157.1|319405_322084_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	27.3	4.3e-80
WP_075271156.1|322085_322796_+	signal peptidase II	NA	NA	NA	NA	NA
WP_115293115.1|322990_324850_+	hypothetical protein	NA	NA	NA	NA	NA
WP_101456676.1|325800_326397_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_075271197.1|326377_327340_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	26.5	1.9e-06
WP_075271196.1|327376_329743_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075271195.1|329813_330680_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_075271194.1|330672_331515_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_075271193.1|331546_332434_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456065.1|332524_332791_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_075271192.1|334286_335078_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_115265545.1|335203_336421_+	ATP-binding cassette domain-containing protein	NA	Q6GZ03	Mycoplasma_phage	32.5	2.7e-13
WP_075271189.1|336486_337461_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_013456634.1|337447_338272_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_075271187.1|338420_340190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954682.1|340228_341296_-	variable surface lipoprotein	NA	NA	NA	NA	NA
WP_115293116.1|341585_343586_+	DHH family phosphoesterase	NA	NA	NA	NA	NA
WP_013456489.1|343566_344022_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_013954685.1|344011_345487_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	33.5	6.0e-52
WP_101456679.1|345486_346779_+	DUF21 domain-containing protein	NA	NA	NA	NA	NA
WP_101456680.1|347137_348160_+	variable surface lipoprotein	NA	NA	NA	NA	NA
WP_173022852.1|348579_348753_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954995.1|348778_350023_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	4.1e-09
WP_101456683.1|351471_352329_+	variable surface lipoprotein	NA	NA	NA	NA	NA
348746:350087	attR	TAAACTAGGACAACAAAAGTAGACCTTAAATTTTTATTTTTTACAAAACTCCACTCACAATTCATGTGGAGTTTTGTAATTAAATTTCTTGAGCATTCGCTCATTATTATATCAATCAATGAATTTATTTAGATGACGCTCAAGTTCCTTAAGCGTCATTTTCTTAACACTTTTCTCAAAATTTTCAAACATTTCAGTTTTAAGTACTGAAAAAAAGTATTCAATTTCTCTATTGTCAAGAGAATTGCCAATTCTTGACATTGATACTTTTCCATTAAGTCTTTCAATTAACTGAAGATATTCTTTAGATGAATATTGACTTCCGTGGTCAGAATGTATAACAAAATTTTTAGGAAAATTAACTTTTTTAATATTATCAATAACCAATGAATTATCATTGTACAAAGACAGGTTAAAACCTAAAATTTTTTTGGTTTTATGATGAATAACAGCTGACATATATACAAAATTTTGATCAACATCTATTGGCGAAGGTATGTATGTAACATCAGTAGCATAGATATCATTATATATGCCATCATAGTCACGAGAAGCAATATTTTGAAACGTTACAGCTACATTCTTAGATTCTTTTGTTCTTTTTGCTTTTCTTATTCTACAAACTAGTCCAAGTTTTTTCATTATTCTACCTAAAGTCCTATAATTAAGCTTTATTTGTTTATTTTTGCTAATATAAGCAGCCAATCTTTCTCTGCCGAAAATGCCTCCAGTTTCTTTAAAAGCTTGAACTACAGTGTTCTCTAATTCAAGATTCTTTTCTTTAATCATTTTCAATTTTTTTAGCTTTTTATAGTATGTAGATTTTTTAATTTTAAGCAATGACATAATAACTTTATTCGATACCTTAAAAGGAAATGAATTCTTTATTTTGGTAACCGTTTCTTTAAATTTGTCCTTTTTTATCTTCTTAATTTCGTCATCTGTAGAAATTATTTTTATTATCTTTATCAAATCTTCTTTATTTAGATCATTTAAAAATTCATCTAATATTTCATCATTTGATTTTGTCTTTTTTGGTCTGCCGGAACCTTTACCTTTTTTAGGCGATCTTCCGCTCATCGATTCTATGTTCATACCTAAATTATATCTTTTATACTTATTCACTAATCTCTTTCATTGATCGTCAGAAATGTGTTTTACATTTTTTATTTTCATCATTTCATTCAAAAAACATTTTTTAGTGAGTTCCCCAGATCTATATTTTTCGTATTTTTCAAACAAATATTTCCATTCATTAACACTTAACTGCTTAGCCATTTTTATCTCCAACAAAAAACATCAGCAAATTTGCTGATGTCTACTTTTTTTGTCCTAGTGTAAA	NA	NA	NA	NA
WP_115265547.1|352757_354107_+	FAD-dependent oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	23.8	1.9e-12
WP_101456685.1|354099_355710_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA	NA
WP_101456686.1|355775_357215_-	DNA recombination protein RmuC	NA	NA	NA	NA	NA
WP_101456687.1|357326_359423_-	peptidase S41	NA	NA	NA	NA	NA
WP_075271013.1|359386_361228_-	leucine-rich repeat domain-containing protein	NA	NA	NA	NA	NA
WP_075271012.1|361230_363540_-	leucine-rich repeat protein	NA	NA	NA	NA	NA
WP_075271011.1|363564_363858_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075271010.1|363858_365220_-	variable surface lipoprotein	NA	NA	NA	NA	NA
WP_013954698.1|365739_366573_+	DNA adenine methylase	NA	A0A1S5PRR3	Streptococcus_phage	45.7	3.6e-54
WP_013954699.1|366879_367833_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_013954700.1|367882_368779_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_115276497.1|368812_370687_-	peptidase S41	NA	NA	NA	NA	NA
WP_013954702.1|370710_371214_-	dUTP diphosphatase	NA	S6AVW3	Thermus_phage	32.8	5.6e-10
WP_078086168.1|371516_373118_-|transposase	IS1634-like element ISMbov3 family transposase	transposase	NA	NA	NA	NA
WP_013954704.1|373503_374868_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_173022604.1|375322_376924_+|transposase	IS1634-like element ISMbov3 family transposase	transposase	NA	NA	NA	NA
WP_013954705.1|377053_377839_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_013954706.1|377843_379373_-	RNA polymerase sigma factor	NA	G8CLC7	Synechococcus_phage	33.7	2.0e-29
WP_101456689.1|379365_381306_-	DNA primase	NA	A0A1S5RFD7	Helicobacter_phage	35.3	5.7e-42
WP_013954708.1|381347_382724_-|tRNA	glycine--tRNA ligase	tRNA	A0A2I2L3K8	Orpheovirus	32.0	3.9e-53
>prophage 5
NZ_CP022594	Mycoplasma bovis strain NADC58 chromosome, complete genome	1098413	398604	467751	1098413	tRNA,transposase	Tupanvirus(30.77%)	42	NA	NA
WP_078086163.1|398604_399633_-|transposase	IS30-like element ISMbov1 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.3	6.5e-21
WP_013456295.1|399976_400432_-	Sua5/YciO/YrdC/YwlC family protein	NA	NA	NA	NA	NA
WP_013954715.1|400482_402153_-	APC family permease	NA	NA	NA	NA	NA
WP_013954716.1|402391_403708_+|tRNA	histidine--tRNA ligase	tRNA	A0A2K9L0H9	Tupanvirus	25.1	2.7e-11
WP_013456122.1|403776_405480_+|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	23.1	2.0e-14
WP_013954691.1|405563_406808_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	5.3e-09
WP_013456084.1|406905_407697_-	aquaporin family protein	NA	M1HQW3	Paramecium_bursaria_Chlorella_virus	27.5	7.3e-12
WP_013954718.1|407705_409214_-	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_013456345.1|409503_410895_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041309259.1|411027_412014_-	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA	NA
WP_013456401.1|412030_412999_-	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA	NA
WP_013456470.1|413112_413856_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_013456409.1|414035_414320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_115293118.1|414312_415959_+	DAK2 domain-containing protein	NA	NA	NA	NA	NA
WP_013456463.1|415965_416970_+	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_013456004.1|416962_417637_+	ribonuclease III	NA	M4QMG4	Micromonas_pusilla_virus	31.9	1.2e-18
WP_115265551.1|417709_420688_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_013954721.1|420740_422093_-	YitT family protein	NA	NA	NA	NA	NA
WP_013954722.1|422187_423024_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_013954723.1|423010_423742_-	DNA-processing protein DprA	NA	NA	NA	NA	NA
WP_038582875.1|425624_426665_+	zinc-dependent alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	29.7	5.2e-34
WP_143823096.1|426976_427195_+	variable surface lipoprotein	NA	NA	NA	NA	NA
WP_013954995.1|427225_428470_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	4.1e-09
WP_173022443.1|428510_428996_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954726.1|429612_432414_-	C1 family peptidase	NA	NA	NA	NA	NA
WP_013954727.1|432642_439674_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954730.1|440386_440587_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014829909.1|440706_441438_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038582704.1|442244_443153_+	variable surface lipoprotein	NA	NA	NA	NA	NA
WP_115276529.1|443491_444520_-|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	32.6	1.1e-20
WP_013954750.1|444842_446258_-	DUF285 domain-containing protein	NA	NA	NA	NA	NA
WP_013954751.1|446555_448037_+	AAA family ATPase	NA	E3T5S4	Cafeteria_roenbergensis_virus	27.7	6.1e-28
WP_013954995.1|448245_449490_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	4.1e-09
WP_101456648.1|451917_453351_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_013954660.1|454676_456065_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_013954754.1|456971_457700_-	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_013954755.1|457869_458994_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_013954756.1|459004_461647_+|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L1X7	Tupanvirus	36.1	6.5e-65
WP_013954757.1|461639_462080_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_013954758.1|462069_462798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954760.1|465390_466113_+	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	33.8	1.4e-06
WP_101456648.1|466317_467751_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP022594	Mycoplasma bovis strain NADC58 chromosome, complete genome	1098413	485169	558641	1098413	tRNA,transposase	Faecalibacterium_phage(20.0%)	58	NA	NA
WP_101456648.1|485169_486603_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_013954780.1|487369_487957_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954781.1|487959_492483_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954782.1|492817_493462_+	hypothetical protein	NA	NA	NA	NA	NA
WP_115276504.1|493625_494864_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	3.1e-09
WP_101456648.1|495131_496565_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_013954783.1|498209_499442_+	UPF0236 family protein	NA	NA	NA	NA	NA
WP_013455996.1|500354_500846_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_013456577.1|500835_501387_+	hypoxanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_013456513.1|501488_501968_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013456428.1|502170_503274_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_013954784.1|503314_504124_-	DUF45 domain-containing protein	NA	NA	NA	NA	NA
WP_101456693.1|504095_504782_-	NERD domain-containing protein	NA	NA	NA	NA	NA
WP_013954786.1|504797_507629_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	52.6	1.7e-276
WP_013954787.1|507630_509640_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_013954788.1|509759_510707_+	DNA cytosine methyltransferase	NA	V5URQ5	Oenococcus_phage	63.3	2.4e-110
WP_014829932.1|510974_511427_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954789.1|511438_512998_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_075271036.1|513476_514337_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075271035.1|514344_514848_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101456695.1|514893_517899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954793.1|517911_518088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954794.1|518173_518842_+	TrkA family potassium uptake protein	NA	NA	NA	NA	NA
WP_013456303.1|519049_519478_+	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_013954796.1|519479_520382_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_013954797.1|520422_521640_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075271135.1|521676_522819_+	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_013954799.1|522880_523258_-	glycine cleavage system protein H	NA	NA	NA	NA	NA
WP_013954800.1|523536_524220_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_013954801.1|524229_526176_+	M13 family metallopeptidase	NA	E3T4I7	Cafeteria_roenbergensis_virus	29.7	1.3e-70
WP_115265553.1|526185_526746_+	single-stranded DNA-binding protein	NA	B8R683	Lactobacillus_phage	41.0	5.0e-15
WP_013456196.1|526866_527493_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_038582742.1|527461_528190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_115276508.1|528210_530550_+|tRNA	class I tRNA ligase family protein	tRNA	A0A2H4PQS0	Staphylococcus_phage	33.7	4.5e-110
WP_172792936.1|530759_533759_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	44.0	6.8e-135
WP_038582744.1|533850_534576_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_013456007.1|534764_535271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456419.1|535375_536287_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013456542.1|536422_536836_-	ATP synthase F1 subunit epsilon	NA	NA	NA	NA	NA
WP_013456276.1|536851_538315_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_013456581.1|538367_539231_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_013954807.1|539223_540810_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_013954808.1|540802_541363_-	ATP synthase F1 subunit delta	NA	NA	NA	NA	NA
WP_013954809.1|541365_541938_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_013456149.1|541942_542170_-	ATP synthase F0 subunit C	NA	NA	NA	NA	NA
WP_013456258.1|542185_543004_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_013954811.1|543641_545315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954812.1|545577_546381_+	variable surface lipoprotein	NA	NA	NA	NA	NA
WP_078086173.1|546855_547884_+|transposase	IS30-like element ISMbov1 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	32.9	1.1e-20
WP_014829937.1|548135_548837_+	variable surface lipoprotein	NA	NA	NA	NA	NA
WP_014829938.1|549448_549889_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954815.1|549881_551630_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.9	2.9e-101
WP_014829939.1|551637_552633_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_013954817.1|552749_553505_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954818.1|553685_555122_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014829940.1|555155_555467_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078086174.1|555537_557139_-|transposase	IS1634-like element ISMbov3 family transposase	transposase	NA	NA	NA	NA
WP_078086175.1|557612_558641_+|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.8	3.8e-21
>prophage 7
NZ_CP022594	Mycoplasma bovis strain NADC58 chromosome, complete genome	1098413	638771	779117	1098413	tRNA,transposase	Faecalibacterium_phage(15.0%)	107	NA	NA
WP_101456648.1|638771_640205_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_075271025.1|640619_641066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013456044.1|641212_642286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013455971.1|642290_642650_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075271026.1|643055_644045_-	hypothetical protein	NA	NA	NA	NA	NA
WP_115276505.1|646155_646833_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075271143.1|646881_647478_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075270940.1|647493_647925_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075270941.1|647948_648620_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013456062.1|648632_649061_-	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_075270942.1|649066_650080_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013455919.1|651279_652713_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_075271115.1|653566_656176_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075271152.1|656208_658419_-	putative immunoglobulin-blocking virulence protein	NA	NA	NA	NA	NA
WP_013455970.1|658604_660569_-	NAD-dependent DNA ligase LigA	NA	Q332J4	Clostridium_botulinum_C_phage	31.7	3.9e-83
WP_013456498.1|660704_661952_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456083.1|662085_663273_+	phosphopentomutase	NA	NA	NA	NA	NA
WP_013456339.1|663361_664183_+	DNA-binding protein WhiA	NA	NA	NA	NA	NA
WP_115265600.1|664397_665582_-	DUF285 domain-containing protein	NA	NA	NA	NA	NA
WP_162293104.1|665626_665785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013456160.1|665889_666597_+	MjaI family restriction endonuclease	NA	E3SIW0	Synechococcus_phage	35.1	2.6e-21
WP_013456269.1|666604_667663_-	site-specific DNA-methyltransferase	NA	S4VS49	Pandoravirus	29.4	2.8e-19
WP_013455983.1|667846_668809_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_080551570.1|669402_670431_-|transposase	IS30-like element ISMbov1 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.3	6.5e-21
WP_013456157.1|670863_671298_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_013456078.1|671299_671707_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_013455924.1|671932_672265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456635.1|672266_673154_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	38.4	4.1e-48
WP_115265564.1|673528_676261_+	HAD-IC family P-type ATPase	NA	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	29.3	5.9e-77
WP_013954870.1|676510_678373_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_013954871.1|678375_679080_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.8	1.1e-19
WP_013954872.1|679057_680206_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954873.1|680195_681086_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954874.1|681072_681960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954875.1|681985_683557_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	33.3	2.0e-69
WP_013954876.1|683601_684567_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_013954877.1|684588_685008_+	transcription antitermination protein NusB	NA	NA	NA	NA	NA
WP_013456406.1|685114_685717_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA	NA
WP_013456586.1|686023_686296_+	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_013954878.1|686322_687258_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_013954879.1|687258_688377_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_013954880.1|688380_690603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954881.1|690632_691526_+	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_013954882.1|691576_692245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013456602.1|692779_693388_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	37.6	8.6e-13
WP_013456480.1|693368_693557_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_004023890.1|693581_693932_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_013954884.1|694003_697423_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_115276515.1|697641_698307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954886.1|698357_699116_-	phosphotransferase	NA	NA	NA	NA	NA
WP_013954887.1|699192_700986_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	23.1	5.7e-20
WP_013954888.1|701061_702513_+	phosphotransferase	NA	NA	NA	NA	NA
WP_013954889.1|702596_703328_+	nitroreductase	NA	NA	NA	NA	NA
WP_013954890.1|703400_704195_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_115276530.1|704236_704437_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_101456648.1|704632_706066_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_013455927.1|706292_707309_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	33.6	8.4e-37
WP_173022855.1|707698_709327_-|transposase	IS1634-like element ISMbov3 family transposase	transposase	NA	NA	NA	NA
WP_115276510.1|709544_710360_-	variable surface lipoprotein	NA	NA	NA	NA	NA
WP_078086163.1|710714_711743_+|transposase	IS30-like element ISMbov1 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.3	6.5e-21
WP_115293119.1|712151_713537_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_101456648.1|713555_714989_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_013954894.1|716971_718543_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_014829956.1|718605_720225_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_013954896.1|720337_721582_-	AEC family transporter	NA	NA	NA	NA	NA
WP_013954897.1|721812_722784_-	lactate dehydrogenase	NA	NA	NA	NA	NA
WP_004023902.1|722990_723227_-	biotin/lipoyl-binding protein	NA	NA	NA	NA	NA
WP_013954898.1|723543_724518_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_013954899.1|724537_725740_+	acetate/propionate family kinase	NA	NA	NA	NA	NA
WP_013954900.1|725748_726654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954901.1|726710_728975_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954902.1|729272_730739_+	MFS transporter	NA	NA	NA	NA	NA
WP_013455927.1|730890_731907_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	33.6	8.4e-37
WP_101456648.1|732133_733567_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_013954903.1|733960_734797_+	HAD hydrolase family protein	NA	NA	NA	NA	NA
WP_013954904.1|734798_735635_+	deoxyribonuclease IV	NA	A0A1V0SHV6	Klosneuvirus	33.1	1.1e-29
WP_013954905.1|735666_737373_+	membrane protein	NA	NA	NA	NA	NA
WP_013456450.1|737387_737729_+	thioredoxin	NA	NA	NA	NA	NA
WP_013456570.1|737734_739450_+	GIY-YIG nuclease family protein	NA	NA	NA	NA	NA
WP_013954907.1|739469_739874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954908.1|740163_742350_+	P80 family lipoprotein	NA	NA	NA	NA	NA
WP_014829957.1|742414_743584_+	thermonuclease family protein	NA	NA	NA	NA	NA
WP_115265569.1|743592_745695_+	ATP-binding cassette domain-containing protein	NA	Q6GZ03	Mycoplasma_phage	28.8	1.6e-18
WP_013456613.1|745678_746746_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_013456037.1|746684_747668_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_013456278.1|747683_747962_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456467.1|747969_749508_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456486.1|749577_750846_-	GTPase ObgE	NA	NA	NA	NA	NA
WP_013456545.1|750957_751782_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_013456427.1|752067_752769_+	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_115265570.1|752787_754083_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	55.0	5.7e-115
WP_115265571.1|754092_754761_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_013954919.1|754805_755588_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_115265572.1|755706_756759_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456562.1|756802_757708_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_013954921.1|757697_758636_-	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	30.5	2.5e-19
WP_013954922.1|758626_759424_-	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	33.5	3.9e-21
WP_013456394.1|759598_759964_-	50S ribosomal protein L17	NA	NA	NA	NA	NA
WP_013456482.1|759963_760974_-	DNA-directed RNA polymerase subunit alpha	NA	NA	NA	NA	NA
WP_004023933.1|760993_761395_-	30S ribosomal protein S11	NA	NA	NA	NA	NA
WP_004023934.1|761414_761786_-	30S ribosomal protein S13	NA	NA	NA	NA	NA
WP_014829961.1|761792_761906_-	50S ribosomal protein L36	NA	NA	NA	NA	NA
WP_004023936.1|761921_762140_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_013954923.1|762146_762896_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_013456188.1|762934_763585_-	nucleoside monophosphate kinase	NA	A0A2K9L7B8	Tupanvirus	33.6	1.4e-08
WP_013456323.1|763578_765057_-	preprotein translocase subunit SecY	NA	NA	NA	NA	NA
WP_078086178.1|778088_779117_+|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.8	3.8e-21
>prophage 8
NZ_CP022594	Mycoplasma bovis strain NADC58 chromosome, complete genome	1098413	811230	846351	1098413	tRNA,integrase,transposase	Staphylococcus_phage(37.5%)	22	816770:816794	822619:822643
WP_013954691.1|811230_812475_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	5.3e-09
WP_115276531.1|813265_814393_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_075271129.1|814516_815818_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_115293126.1|816725_817232_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
816770:816794	attL	GGAATTTACTAACGCTTGAGAACAG	NA	NA	NA	NA
WP_075270949.1|817246_818167_+|integrase	site-specific integrase	integrase	A8ATD6	Listeria_phage	48.3	1.6e-79
WP_013954950.1|818212_821410_-	type I restriction endonuclease subunit R	NA	NA	NA	NA	NA
WP_013954952.1|822685_825364_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	39.6	7.0e-91
822619:822643	attR	CTGTTCTCAAGCGTTAGTAAATTCC	NA	NA	NA	NA
WP_014829966.1|825867_827280_+|transposase	IS1634-like element ISMbov2 family transposase	transposase	NA	NA	NA	NA
WP_014829967.1|827378_828131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954954.1|828187_828676_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954957.1|829803_830358_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_013954958.1|830366_832301_-	peptidase S41	NA	NA	NA	NA	NA
WP_115276518.1|832327_834370_-	peptidase S41	NA	NA	NA	NA	NA
WP_075271178.1|834657_836049_+|tRNA	glutamate--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	25.2	6.6e-08
WP_013456580.1|836039_836441_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456621.1|836703_837852_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	52.4	3.8e-102
WP_013456411.1|839051_840410_-	signal recognition particle protein	NA	D6PHS7	uncultured_phage	29.0	8.7e-05
WP_013456099.1|840428_841253_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_013456213.1|841324_841564_-	hypothetical protein	NA	A0A172JI00	Bacillus_phage	40.9	4.6e-10
WP_101456714.1|841657_843070_-|transposase	IS1634-like element ISMbov2 family transposase	transposase	NA	NA	NA	NA
WP_101456648.1|843674_845108_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_013455927.1|845334_846351_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	33.6	8.4e-37
>prophage 9
NZ_CP022594	Mycoplasma bovis strain NADC58 chromosome, complete genome	1098413	865888	947685	1098413	integrase,tRNA,transposase	Enterobacteria_phage(18.75%)	51	894753:894778	934772:934797
WP_013456540.1|865888_867277_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_013954983.1|867711_869544_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.3	3.4e-28
WP_038582898.1|869554_871339_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.3	1.0e-29
WP_013954985.1|871562_873032_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013456163.1|873290_873536_-	YneF family protein	NA	NA	NA	NA	NA
WP_013954986.1|873561_874650_-	M42 family peptidase	NA	NA	NA	NA	NA
WP_014829974.1|874752_875997_+|transposase	IS3 family transposase	transposase	Q6H9S6	Enterobacteria_phage	26.6	6.9e-09
WP_075271052.1|876041_884039_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954989.1|884194_888631_-	DNA-directed RNA polymerase subunit beta'	NA	A0A076FGB9	Aureococcus_anophage	23.5	3.2e-48
WP_115293120.1|888623_892259_-	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.4	4.9e-47
WP_004024017.1|893489_893861_-	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_172792937.1|893887_894382_-	50S ribosomal protein L10	NA	NA	NA	NA	NA
894753:894778	attL	GGTGCTTTTTAATTTAAGAATTTATA	NA	NA	NA	NA
WP_013456027.1|894873_895599_+	leucine-rich repeat domain-containing protein	NA	NA	NA	NA	NA
WP_115276519.1|895610_897080_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SIS0	Klosneuvirus	36.9	6.8e-80
WP_013954990.1|897233_898124_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954991.1|898168_900328_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_013954992.1|900474_902643_+	AAA family ATPase	NA	K4FB40	Cronobacter_phage	34.4	1.1e-107
WP_013954995.1|903885_905130_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	4.1e-09
WP_115288272.1|906153_906882_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954995.1|906907_908152_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	4.1e-09
WP_013954660.1|909335_910724_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_013456062.1|911793_912222_+	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_075270941.1|912234_912906_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075270940.1|912929_913361_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075271143.1|913376_913973_+	hypothetical protein	NA	NA	NA	NA	NA
WP_115276505.1|914021_914699_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456390.1|916809_917799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013455971.1|918204_918564_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456044.1|918568_919642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075271025.1|919788_920235_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075271024.1|920218_923005_+	DUF87 domain-containing protein	NA	NA	NA	NA	NA
WP_115293121.1|924177_925386_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_101456648.1|925592_927026_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_013455927.1|927252_928269_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	33.6	8.4e-37
WP_115293127.1|928330_928501_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_075271022.1|932108_932354_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075271144.1|932325_934041_+	DUF2326 domain-containing protein	NA	NA	NA	NA	NA
WP_075271020.1|934144_934597_+	SocA family protein	NA	A0A0N9SGM1	Paenibacillus_phage	44.3	1.2e-22
WP_078086178.1|934931_935960_-|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.8	3.8e-21
934772:934797	attR	TATAAATTCTTAAATTAAAAAGCACC	NA	NA	NA	NA
WP_075271147.1|936410_937991_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075271018.1|938128_939391_-	DUF2130 domain-containing protein	NA	NA	NA	NA	NA
WP_075271017.1|939605_939959_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075271016.1|940038_940878_-	ParA family protein	NA	E2ELL2	Clostridium_phage	24.5	2.3e-08
WP_075271005.1|941656_942793_+	hypothetical protein	NA	NA	NA	NA	NA
WP_173022444.1|942927_943092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954997.1|943213_944311_+	DNA adenine methylase	NA	M1HGA9	Paramecium_bursaria_Chlorella_virus	31.6	6.5e-27
WP_014829976.1|944292_945234_+	DNA adenine methylase	NA	A0A1W6JN66	Lactococcus_phage	39.9	6.5e-52
WP_013954999.1|945372_945663_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_013456497.1|945666_946350_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_013456054.1|946339_946690_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_013955000.1|946845_947685_-|tRNA	methionyl-tRNA formyltransferase	tRNA	M4QRX9	Synechococcus_phage	23.7	9.1e-05
>prophage 10
NZ_CP022594	Mycoplasma bovis strain NADC58 chromosome, complete genome	1098413	1027990	1094570	1098413	tRNA,integrase,protease,transposase	Bacillus_virus(18.18%)	44	1027657:1027708	1055601:1055652
1027657:1027708	attL	ATATTCATTAACAAAGCAAAAAGCACCACAAGTTAACTTGCGGCGCTTTTTG	NA	NA	NA	NA
WP_078086180.1|1027990_1029019_+|transposase	IS30-like element ISMbov1 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.3	6.5e-21
WP_115293122.1|1029229_1030237_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_173022856.1|1036281_1036740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_173022854.1|1037089_1037722_-	variable surface lipoprotein	NA	NA	NA	NA	NA
WP_013456123.1|1038989_1039739_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_013955063.1|1040137_1041982_+	ribonuclease J	NA	NA	NA	NA	NA
WP_013955064.1|1042116_1043268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014829996.1|1043457_1045875_+	DUF2779 domain-containing protein	NA	NA	NA	NA	NA
WP_013955066.1|1045892_1046201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075271049.1|1046498_1047920_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_013955068.1|1047912_1049226_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_013955069.1|1049225_1049531_-|tRNA	glutamyl-tRNA(Gln) amidotransferase	tRNA	NA	NA	NA	NA
WP_013955070.1|1049536_1050391_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_013456616.1|1050402_1050981_-	segregation/condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	29.7	1.2e-11
WP_013955071.1|1050970_1051732_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_013456430.1|1051724_1052465_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_013456524.1|1052474_1052789_-	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA	NA
WP_013456382.1|1052962_1054273_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_013456261.1|1054275_1054941_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_014829997.1|1055011_1055473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013955073.1|1055760_1056894_-	DnaJ domain-containing protein	NA	A0A1V0SBY2	Catovirus	32.2	3.0e-27
1055601:1055652	attR	ATATTCATTAACAAAGCAAAAAGCACCACAAGTTAACTTGCGGCGCTTTTTG	NA	NA	NA	NA
WP_013955074.1|1057131_1057473_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_013955075.1|1057646_1058882_-|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	33.2	3.3e-59
WP_013955076.1|1058892_1059495_-|tRNA	tRNA-binding protein	tRNA	NA	NA	NA	NA
WP_013456246.1|1059556_1060459_+	DegV family protein	NA	NA	NA	NA	NA
WP_014829999.1|1060619_1060853_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_013955078.1|1060892_1061615_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_013456073.1|1061614_1062691_-	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_013955080.1|1062816_1063389_-	Fic family protein	NA	NA	NA	NA	NA
WP_013955081.1|1063410_1064832_-	YitT family protein	NA	NA	NA	NA	NA
WP_013954660.1|1066286_1067675_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_013955084.1|1067989_1069957_+	type IIA DNA topoisomerase subunit B	NA	G3M9Z3	Bacillus_virus	41.5	8.7e-131
WP_013955085.1|1070079_1070394_+	thioredoxin family protein	NA	A0A1X9I9P5	Staphylococcus_phage	39.0	1.7e-12
WP_013955086.1|1070446_1070893_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	37.4	1.8e-12
WP_115276526.1|1071382_1072771_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_115265593.1|1075770_1076760_-	BspA family leucine-rich repeat surface protein	NA	NA	NA	NA	NA
WP_038582834.1|1076875_1077085_-	variable surface lipoprotein	NA	NA	NA	NA	NA
WP_013456532.1|1077221_1078181_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_013955092.1|1078376_1078772_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013955093.1|1078950_1080195_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.3	1.1e-09
WP_013955094.1|1080312_1083021_-	magnesium-translocating P-type ATPase	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	26.1	3.7e-47
WP_013955095.1|1083141_1084230_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.7	2.2e-14
WP_115276528.1|1084236_1092360_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_013955097.1|1092539_1094570_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	46.5	3.8e-105
