The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP022590	Mycoplasma bovis strain NADC54 chromosome, complete genome	1143450	3436	78702	1143450	transposase,tRNA	Bodo_saltans_virus(14.29%)	55	NA	NA
WP_115265524.1|3436_4681_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	5.3e-09
WP_014829846.1|4683_6003_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_013954491.1|6274_7060_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_013954492.1|7061_7853_+	alpha/beta hydrolase	NA	G9E3U1	Emiliania_huxleyi_virus	19.7	7.8e-06
WP_115265595.1|7904_9086_-	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA	NA
WP_115276487.1|9078_10125_-	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	26.2	1.2e-14
WP_013456070.1|10194_11232_-	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	25.9	9.2e-15
WP_013456410.1|11209_12079_-	deacetylase SIR2	NA	NA	NA	NA	NA
WP_013954496.1|12080_12425_-	calcium-binding protein	NA	NA	NA	NA	NA
WP_013456398.1|12408_13410_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_013456108.1|13594_14398_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013455936.1|14448_15855_-	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_013456171.1|15981_16434_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013456518.1|16542_18147_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	26.4	1.2e-10
WP_013954498.1|18139_20128_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_013456299.1|20127_21105_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_013456248.1|21382_22045_+	deoxyguanosine kinase	NA	Q5ULP7	Lactobacillus_virus	27.6	2.9e-06
WP_013456161.1|22046_22700_+	deoxyguanosine kinase	NA	Q5ULP7	Lactobacillus_virus	26.2	1.9e-05
WP_013954499.1|22907_24611_-	peptidase S41	NA	NA	NA	NA	NA
WP_013456349.1|24881_25787_-	pseudouridine-5'-phosphate glycosidase	NA	NA	NA	NA	NA
WP_013456608.1|25789_26689_-	sugar kinase	NA	NA	NA	NA	NA
WP_078086163.1|26996_28025_-|transposase	IS30-like element ISMbov1 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.3	6.5e-21
WP_013456023.1|28386_29217_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_115276488.1|29250_31227_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_013954500.1|31226_32249_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.7	3.6e-27
WP_013456151.1|32355_32703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954501.1|32677_34099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_101456648.1|34445_35879_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_013456564.1|36252_37587_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	30.7	4.5e-06
WP_013456445.1|37579_39199_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.6	6.0e-13
WP_013456184.1|39206_40220_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_013954502.1|40221_41307_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_013954503.1|41315_44267_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_115276489.1|44280_54261_-	PDxFFG protein	NA	NA	NA	NA	NA
WP_013954506.1|55995_57237_+|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	30.9	5.3e-41
WP_013954507.1|57283_57985_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_013954508.1|57974_58559_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456379.1|58614_58764_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_014829857.1|58763_59000_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_013456192.1|59005_59605_+	transcription termination/antitermination protein NusG	NA	NA	NA	NA	NA
WP_013955088.1|60198_61872_+|transposase	IS1634-like element ISMbov3 family transposase	transposase	NA	NA	NA	NA
WP_013954511.1|62100_64311_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954512.1|64468_65503_+	membrane protein	NA	NA	NA	NA	NA
WP_013954513.1|65694_66417_+	UMP kinase	NA	NA	NA	NA	NA
WP_013954514.1|66416_66968_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_013954515.1|67236_68472_-	competence protein ComEC	NA	NA	NA	NA	NA
WP_013954516.1|68549_69062_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101456642.1|69156_70155_-	glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_101456643.1|70169_70958_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	E4ZFQ0	Streptococcus_phage	25.2	2.0e-09
WP_075270978.1|70950_71712_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
WP_075270979.1|71721_73059_-|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	tRNA	NA	NA	NA	NA
WP_013456626.1|73186_73861_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456534.1|73892_74903_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_101456657.1|75498_77172_-|transposase	IS1634-like element ISMbov3 family transposase	transposase	NA	NA	NA	NA
WP_115276490.1|77433_78702_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.2	2.0e-80
>prophage 2
NZ_CP022590	Mycoplasma bovis strain NADC54 chromosome, complete genome	1143450	85091	95794	1143450	transposase,tRNA	Faecalibacterium_phage(16.67%)	7	NA	NA
WP_078086171.1|85091_86120_+|transposase	IS30-like element ISMbov1 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.0	5.0e-21
WP_041309069.1|86322_87087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954530.1|87079_88060_+	aspartate--ammonia ligase	NA	A0A1C9C5F0	Heterosigma_akashiwo_virus	40.6	8.1e-53
WP_013954531.1|88184_92561_+	PolC-type DNA polymerase III	NA	A0A0K2SUJ2	Clostridium_phage	31.8	6.2e-12
WP_013954532.1|92966_94190_+	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	35.1	1.5e-61
WP_013456569.1|94179_95145_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	40.9	3.6e-29
WP_013954533.1|95134_95794_+	uracil-DNA glycosylase	NA	A0A068EP41	Falconid_herpesvirus	36.4	1.6e-28
>prophage 3
NZ_CP022590	Mycoplasma bovis strain NADC54 chromosome, complete genome	1143450	141398	211691	1143450	transposase,tRNA	Mycoplasma_phage(26.67%)	51	NA	NA
WP_115265535.1|141398_143072_+|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
WP_078086163.1|143293_144322_-|transposase	IS30-like element ISMbov1 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.3	6.5e-21
WP_013456546.1|144839_145286_-	ribose 5-phosphate isomerase B	NA	NA	NA	NA	NA
WP_115276491.1|145441_147499_+	ATP-binding cassette domain-containing protein	NA	A0A1V0SE00	Indivirus	29.4	7.2e-11
WP_013456267.1|147476_147863_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456026.1|147891_148350_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_013455912.1|148352_148748_+	cytidine deaminase	NA	NA	NA	NA	NA
WP_013456544.1|148759_149632_+	GTPase Era	NA	NA	NA	NA	NA
WP_013456097.1|149665_150715_+	aminopeptidase P family protein	NA	NA	NA	NA	NA
WP_013456141.1|150832_152269_+|tRNA	proline--tRNA ligase	tRNA	A0A1V0SJ28	Klosneuvirus	37.9	1.1e-93
WP_013456293.1|152328_152697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075271211.1|152812_154630_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456555.1|154725_155424_+	LemA family protein	NA	NA	NA	NA	NA
WP_101456649.1|155606_157994_+	phosphoketolase family protein	NA	NA	NA	NA	NA
WP_101456650.1|158052_159894_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	19.1	2.1e-17
WP_041309079.1|159885_160131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456016.1|160156_161569_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	68.7	1.2e-81
WP_013456380.1|161552_162389_+	ABC transporter permease	NA	Q6GZ02	Mycoplasma_phage	62.0	2.5e-87
WP_013456215.1|162381_163275_+	spermidine/putrescine ABC transporter permease	NA	Q6GZ01	Mycoplasma_phage	62.3	2.1e-92
WP_013455994.1|163261_165163_+	membrane protein	NA	Q6GZ00	Mycoplasma_phage	34.2	3.9e-80
WP_013456051.1|165387_165588_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_115276492.1|165651_167280_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075271214.1|167281_168418_+|tRNA	tRNA 4-thiouridine(8) synthase ThiI	tRNA	NA	NA	NA	NA
WP_013455960.1|168461_168740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075271220.1|168781_170224_-	BspA family leucine-rich repeat surface protein	NA	NA	NA	NA	NA
WP_081375324.1|170493_171843_-	BspA family leucine-rich repeat surface protein	NA	NA	NA	NA	NA
WP_075271216.1|172590_175026_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075271217.1|175177_177667_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	39.9	5.8e-140
WP_075271218.1|177669_178530_+	bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	37.6	1.3e-33
WP_013954592.1|178629_179586_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_013954593.1|179589_180783_+	acetate/propionate family kinase	NA	NA	NA	NA	NA
WP_101456651.1|180798_181221_+	pantetheine-phosphate adenylyltransferase	NA	NA	NA	NA	NA
WP_101456652.1|181220_181802_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_101456653.1|181829_183326_+	hypothetical protein	NA	NA	NA	NA	NA
WP_101456654.1|183462_184899_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_101456655.1|184967_185948_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101456656.1|186198_187992_+	molecular chaperone DnaK	NA	A0A0G2YAL1	Acanthamoeba_polyphaga_mimivirus	45.8	2.5e-129
WP_101456657.1|188185_189859_-|transposase	IS1634-like element ISMbov3 family transposase	transposase	NA	NA	NA	NA
WP_013954995.1|190097_191342_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	4.1e-09
WP_101456658.1|191435_192719_-|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_013954601.1|192877_193261_+	membrane protein	NA	NA	NA	NA	NA
WP_013954602.1|193398_194388_-	lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	32.9	1.8e-39
WP_075271077.1|194797_195598_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_013954606.1|196051_196504_+	hypothetical protein	NA	NA	NA	NA	NA
WP_115276493.1|196671_199095_-	type III restriction endonuclease subunit R	NA	NA	NA	NA	NA
WP_115276494.1|202588_203842_-	site-specific DNA-methyltransferase	NA	A0A2K5B2C1	Erysipelothrix_phage	29.2	8.8e-28
WP_075271984.1|203841_204231_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954611.1|204358_205864_-	trigger factor	NA	NA	NA	NA	NA
WP_013954613.1|206517_207927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101456648.1|209249_210683_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_115265597.1|210701_211691_-|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.8	2.8e-21
>prophage 4
NZ_CP022590	Mycoplasma bovis strain NADC54 chromosome, complete genome	1143450	215884	298315	1143450	transposase,tRNA	Enterobacteria_phage(22.22%)	59	NA	NA
WP_013954995.1|215884_217129_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	4.1e-09
WP_013955088.1|218025_219699_+|transposase	IS1634-like element ISMbov3 family transposase	transposase	NA	NA	NA	NA
WP_101456648.1|220016_221450_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_013954619.1|221770_222688_-	5'-3' exonuclease	NA	A0A0N7ACJ6	Bacillus_phage	31.1	1.3e-31
WP_013954620.1|222689_225623_-	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	34.4	1.0e-87
WP_014829941.1|226373_228047_+|transposase	IS1634-like element ISMbov3 family transposase	transposase	NA	NA	NA	NA
WP_115265598.1|230157_231489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041323931.1|231482_233810_-	membrane protein	NA	NA	NA	NA	NA
WP_078086163.1|236471_237500_-|transposase	IS30-like element ISMbov1 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.3	6.5e-21
WP_013954995.1|238150_239395_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	4.1e-09
WP_013954995.1|240743_241988_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	4.1e-09
WP_014829881.1|242479_243913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014829883.1|244550_245882_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041323925.1|245875_248191_-	membrane protein	NA	NA	NA	NA	NA
WP_013954624.1|248365_248815_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954625.1|249136_250978_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_013954626.1|250964_251417_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_049773792.1|251527_253243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954628.1|253386_254406_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954629.1|254406_254955_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_013455969.1|255022_255583_+	peptide deformylase	NA	NA	NA	NA	NA
WP_013954630.1|255595_256993_+	CvpA family protein	NA	NA	NA	NA	NA
WP_013954631.1|257106_259023_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	41.9	5.7e-119
WP_013954632.1|259036_261622_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	29.6	9.8e-90
WP_013954633.1|261763_262693_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_075271093.1|262694_263411_+	ribonuclease HIII	NA	NA	NA	NA	NA
WP_013954635.1|263598_264573_+	DNA (cytosine-5-)-methyltransferase	NA	R4TMW4	Halovirus	38.4	1.6e-48
WP_013954636.1|264565_265273_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456076.1|265742_266072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954638.1|266314_267010_-	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_014829885.1|266993_267980_-	ribose-phosphate pyrophosphokinase	NA	A0A2K9L2G2	Tupanvirus	35.7	2.2e-42
WP_013954642.1|268197_268920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954691.1|269545_270790_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	5.3e-09
WP_038582854.1|270867_271635_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954646.1|272321_273266_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954647.1|273364_275311_+	transketolase	NA	NA	NA	NA	NA
WP_013954648.1|275373_275928_-	inorganic diphosphatase	NA	A0A1B1ISK6	uncultured_Mediterranean_phage	39.1	2.1e-21
WP_013456603.1|276006_276276_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_013954649.1|276389_276977_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954650.1|277070_279239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954651.1|279250_280633_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954652.1|280632_280968_+	HIT family protein	NA	B5LJ12	Mycobacterium_phage	33.8	3.6e-05
WP_013954653.1|281086_281785_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004024364.1|281838_281991_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_013456491.1|282456_282942_+	thiol peroxidase	NA	NA	NA	NA	NA
WP_013456378.1|282979_283216_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954655.1|283205_284270_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_013954656.1|284338_284623_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014829889.1|284644_286195_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SEZ7	Hokovirus	35.7	1.9e-80
WP_013954658.1|286197_287004_-|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
WP_013456627.1|287003_289193_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	33.5	1.0e-71
WP_013456572.1|289195_289438_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_013456283.1|289780_290368_+	guanylate kinase	NA	A0A0M5KCK5	Mollivirus	38.6	1.2e-08
WP_013456579.1|290373_291126_+	serine/threonine-protein phosphatase	NA	NA	NA	NA	NA
WP_013456514.1|291143_292142_+	serine/threonine protein kinase	NA	Q85453	Moloney_murine_sarcoma_virus	32.2	4.3e-17
WP_013456585.1|292153_292999_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_013455939.1|292985_293648_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_115265540.1|294510_296736_-	recombinase RecD	NA	A0A2K9V9X6	Bandra_megavirus	26.7	2.3e-31
WP_013456112.1|296881_298315_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP022590	Mycoplasma bovis strain NADC54 chromosome, complete genome	1143450	305492	389056	1143450	integrase,transposase,tRNA	Enterobacteria_phage(25.0%)	57	305458:305517	355075:356418
305458:305517	attL	ACTAAACTAGGACAACAAAAGTAGACCTTAAATTTTTATTTTTTACAAAACTCCACTCAC	NA	NA	NA	NA
WP_013954995.1|305492_306737_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	4.1e-09
WP_014829941.1|307469_309143_+|transposase	IS1634-like element ISMbov3 family transposase	transposase	NA	NA	NA	NA
WP_115265543.1|309194_310826_+	SAM-dependent DNA methyltransferase	NA	NA	NA	NA	NA
WP_013954666.1|310812_311364_+	C-terminal truncated type I restriction modification DNA specificity domain-containing protein	NA	NA	NA	NA	NA
WP_013954660.1|312149_313538_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_115276496.1|314616_315036_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_013954669.1|315109_316078_+|integrase	integrase	integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	29.2	3.8e-31
WP_013456559.1|316442_318116_-|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
WP_081375157.1|318565_319048_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954672.1|319342_320500_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_013954673.1|321445_323065_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	39.8	5.9e-109
WP_075271157.1|323304_325983_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	27.3	4.3e-80
WP_075271156.1|325984_326695_+	signal peptidase II	NA	NA	NA	NA	NA
WP_101456675.1|326889_328749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_101456676.1|329699_330296_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_075271197.1|330276_331239_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	26.5	1.9e-06
WP_075271196.1|331275_333642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954995.1|333717_334962_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	4.1e-09
WP_075271195.1|335055_335922_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_075271194.1|335914_336757_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_075271193.1|336788_337676_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456065.1|337766_338033_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_115265524.1|338082_339327_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	5.3e-09
WP_075271192.1|339529_340321_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_115265545.1|340446_341664_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	32.5	2.7e-13
WP_075271189.1|341729_342704_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_013456634.1|342690_343515_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_075271187.1|343663_345433_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954682.1|345471_346539_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075271184.1|346828_348829_+	phosphoesterase	NA	NA	NA	NA	NA
WP_013456489.1|348809_349265_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_013954685.1|349254_350730_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	33.5	6.0e-52
WP_101456679.1|350729_352022_+	DUF21 domain-containing protein	NA	NA	NA	NA	NA
WP_101456680.1|352380_353403_+	hypothetical protein	NA	NA	NA	NA	NA
WP_101456681.1|353810_354185_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954995.1|355109_356354_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	4.1e-09
WP_101456683.1|357803_358661_+	hypothetical protein	NA	NA	NA	NA	NA
355075:356418	attR	ACTAAACTAGGACAACAAAAGTAGACCTTAAATTTTTATTTTTTACAAAACTCCACTCACAATTCATGTGGAGTTTTGTAATTAAATTTCTTGAGCATTCGCTCATTATTATATCAATCAATGAATTTATTTAGATGACGCTCAAGTTCCTTAAGCGTCATTTTCTTAACACTTTTCTCAAAATTTTCAAACATTTCAGTTTTAAGTACTGAAAAAAAGTATTCAATTTCTCTATTGTCAAGAGAATTGCCAATTCTTGACATTGATACTTTTCCATTAAGTCTTTCAATTAACTGAAGATATTCTTTAGATGAATATTGACTTCCGTGGTCAGAATGTATAACAAAATTTTTAGGAAAATTAACTTTTTTAATATTATCAATAACCAATGAATTATCATTGTACAAAGACAGGTTAAAACCTAAAATTTTTTTGGTTTTATGATGAATAACAGCTGACATATATACAAAATTTTGATCAACATCTATTGGCGAAGGTATGTATGTAACATCAGTAGCATAGATATCATTATATATGCCATCATAGTCACGAGAAGCAATATTTTGAAACGTTACAGCTACATTCTTAGATTCTTTTGTTCTTTTTGCTTTTCTTATTCTACAAACTAGTCCAAGTTTTTTCATTATTCTACCTAAAGTCCTATAATTAAGCTTTATTTGTTTATTTTTGCTAATATAAGCAGCCAATCTTTCTCTGCCGAAAATGCCTCCAGTTTCTTTAAAAGCTTGAACTACAGTGTTCTCTAATTCAAGATTCTTTTCTTTAATCATTTTCAATTTTTTTAGCTTTTTATAGTATGTAGATTTTTTAATTTTAAGCAATGACATAATAACTTTATTCGATACCTTAAAAGGAAATGAATTCTTTATTTTGGTAACCGTTTCTTTAAATTTGTCCTTTTTTATCTTCTTAATTTCGTCATCTGTAGAAATTATTTTTATTATCTTTATCAAATCTTCTTTATTTAGATCATTTAAAAATTCATCTAATATTTCATCATTTGATTTTGTCTTTTTTGGTCTGCCGGAACCTTTACCTTTTTTAGGCGATCTTCCGCTCATCGATTCTATGTTCATACCTAAATTATATCTTTTATACTTATTCACTAATCTCTTTCATTGATCGTCAGAAATGTGTTTTACATTTTTTATTTTCATCATTTCATTCAAAAAACATTTTTTAGTGAGTTCCCCAGATCTATATTTTTCGTATTTTTCAAACAAATATTTCCATTCATTAACACTTAACTGCTTAGCCATTTTTATCTCCAACAAAAAACATCAGCAAATTTGCTGATGTCTACTTTTTTTGTCCTAGTGTAAA	NA	NA	NA	NA
WP_115265547.1|359089_360439_+	NADH oxidase	NA	A0A2K5B2C5	Erysipelothrix_phage	23.8	1.9e-12
WP_101456685.1|360431_362042_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA	NA
WP_101456686.1|362107_363547_-	DNA recombination protein RmuC	NA	NA	NA	NA	NA
WP_101456687.1|363658_365755_-	peptidase S41	NA	NA	NA	NA	NA
WP_075271013.1|365718_367560_-	leucine-rich repeat domain-containing protein	NA	NA	NA	NA	NA
WP_075271012.1|367562_369872_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075271011.1|369896_370190_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075271010.1|370190_371552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954698.1|372071_372905_+	DNA adenine methylase	NA	A0A1S5PRR3	Streptococcus_phage	45.7	3.6e-54
WP_013954699.1|373211_374165_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_013954700.1|374214_375111_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_115276497.1|375144_377019_-	peptidase S41	NA	NA	NA	NA	NA
WP_013954702.1|377042_377546_-	hypothetical protein	NA	S6AVW3	Thermus_phage	32.8	5.6e-10
WP_013954703.1|377848_379522_-|transposase	IS1634-like element ISMbov3 family transposase	transposase	NA	NA	NA	NA
WP_013954704.1|379835_381200_-	NADH oxidase	NA	NA	NA	NA	NA
WP_115276498.1|381582_383256_+|transposase	IS1634-like element ISMbov3 family transposase	transposase	NA	NA	NA	NA
WP_013954705.1|383385_384171_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_013954706.1|384175_385705_-	RNA polymerase sigma factor	NA	G8CLC7	Synechococcus_phage	33.7	2.0e-29
WP_101456689.1|385697_387638_-	DNA primase	NA	A0A1S5RFD7	Helicobacter_phage	35.3	5.7e-42
WP_013954708.1|387679_389056_-|tRNA	glycine--tRNA ligase	tRNA	A0A2I2L3K8	Orpheovirus	32.0	3.9e-53
>prophage 6
NZ_CP022590	Mycoplasma bovis strain NADC54 chromosome, complete genome	1143450	404937	473562	1143450	transposase,tRNA	Tupanvirus(25.0%)	48	NA	NA
WP_078086163.1|404937_405966_-|transposase	IS30-like element ISMbov1 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.3	6.5e-21
WP_013456295.1|406309_406765_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954715.1|406815_408486_-	amino acid permease	NA	NA	NA	NA	NA
WP_013954716.1|408724_410041_+|tRNA	histidine--tRNA ligase	tRNA	A0A2K9L0H9	Tupanvirus	25.1	2.7e-11
WP_013456122.1|410109_411813_+|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	23.1	2.0e-14
WP_013954691.1|411896_413141_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	5.3e-09
WP_013456084.1|413238_414030_-	aquaporin family protein	NA	M1HQW3	Paramecium_bursaria_Chlorella_virus	27.5	7.3e-12
WP_013954718.1|414038_415547_-	glycerol kinase	NA	NA	NA	NA	NA
WP_013456345.1|415836_417228_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013456049.1|417360_418362_-	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA	NA
WP_115276500.1|418363_419332_-	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA	NA
WP_013456470.1|419445_420189_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_013456409.1|420368_420653_+	hypothetical protein	NA	NA	NA	NA	NA
WP_115276501.1|420645_422292_+	DAK2 domain-containing protein	NA	NA	NA	NA	NA
WP_013456463.1|422298_423303_+	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_013456004.1|423295_423970_+	ribonuclease III	NA	M4QMG4	Micromonas_pusilla_virus	31.9	1.2e-18
WP_115265551.1|424042_427021_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_013954721.1|427073_428426_-	YitT family protein	NA	NA	NA	NA	NA
WP_013954722.1|428520_429357_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_013954723.1|429343_430075_-	DNA processing protein DprA	NA	NA	NA	NA	NA
WP_115276502.1|430432_431866_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_115276529.1|432078_433107_-|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	32.6	1.1e-20
WP_013954750.1|433429_434845_-	BspA family leucine-rich repeat surface protein	NA	NA	NA	NA	NA
WP_013954751.1|435142_436624_+	hypothetical protein	NA	E3T5S4	Cafeteria_roenbergensis_virus	27.7	6.1e-28
WP_013954995.1|436832_438077_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	4.1e-09
WP_101456648.1|440504_441938_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_013954753.1|442896_443757_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954754.1|443927_444656_-	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_013954755.1|444825_445950_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_013954756.1|445960_448603_+|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L1X7	Tupanvirus	36.1	6.5e-65
WP_013954757.1|448595_449036_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_013954758.1|449025_449754_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954760.1|452346_453069_+	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	33.8	1.4e-06
WP_101456648.1|453273_454707_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_013954761.1|455051_455504_+	DUF4065 domain-containing protein	NA	A0A0N9SGM1	Paenibacillus_phage	41.0	2.0e-22
WP_013954765.1|456612_457464_+	BspA family leucine-rich repeat surface protein	NA	NA	NA	NA	NA
WP_014829922.1|457682_457952_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014829924.1|459102_460464_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038582722.1|460464_462474_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
WP_013456441.1|462531_462798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954770.1|462790_463642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954771.1|463634_463859_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954772.1|463878_464310_+	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_013954773.1|464322_464976_+	hypothetical protein	NA	NA	NA	NA	NA
WP_115276503.1|465203_466724_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038582726.1|466970_467168_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456404.1|467191_467497_+	hypothetical protein	NA	NA	NA	NA	NA
WP_101456648.1|472128_473562_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP022590	Mycoplasma bovis strain NADC54 chromosome, complete genome	1143450	546486	602238	1143450	transposase,tRNA	Faecalibacterium_phage(40.0%)	41	NA	NA
WP_115276508.1|546486_548826_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	33.7	4.5e-110
WP_013954805.1|548903_552035_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	44.0	7.1e-135
WP_013455922.1|552135_552852_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_013456007.1|553040_553547_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456419.1|553651_554563_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013456542.1|554698_555112_-	ATP synthase F1 subunit epsilon	NA	NA	NA	NA	NA
WP_013456276.1|555127_556591_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_013456581.1|556643_557507_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_013954807.1|557499_559086_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_013954808.1|559078_559639_-	ATP synthase F1 subunit delta	NA	NA	NA	NA	NA
WP_013954809.1|559641_560214_-	ATP synthase F0 subunit B	NA	NA	NA	NA	NA
WP_013456149.1|560218_560446_-	ATP synthase subunit C	NA	NA	NA	NA	NA
WP_013456258.1|560461_561280_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_013954810.1|561280_561718_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954811.1|561917_563591_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954812.1|563853_564657_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078086173.1|565131_566160_+|transposase	IS30-like element ISMbov1 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	32.9	1.1e-20
WP_014829937.1|566411_567113_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014829938.1|567724_568165_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954815.1|568157_569906_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.9	2.9e-101
WP_014829939.1|569913_570909_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_013954817.1|571025_571781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954818.1|571961_573398_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014829940.1|573431_573743_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014829941.1|573813_575487_-|transposase	IS1634-like element ISMbov3 family transposase	transposase	NA	NA	NA	NA
WP_078086175.1|575888_576917_+|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.8	3.8e-21
WP_115276509.1|577182_578004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014829944.1|578445_578709_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014829945.1|578863_579415_-	hypothetical protein	NA	NA	NA	NA	NA
WP_115276510.1|579714_580530_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014829947.1|580702_582376_+|transposase	IS1634-like element ISMbov3 family transposase	transposase	NA	NA	NA	NA
WP_013456029.1|582922_584335_-|transposase	IS1634-like element ISMbov2 family transposase	transposase	NA	NA	NA	NA
WP_013954819.1|584573_586802_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954821.1|589541_591530_+	BspA family leucine-rich repeat surface protein	NA	NA	NA	NA	NA
WP_075271160.1|591838_593563_+	hypothetical protein	NA	NA	NA	NA	NA
WP_115276511.1|593953_594481_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075271162.1|594542_594785_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456133.1|594971_596273_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_075270944.1|597081_599040_+	peptidase S41	NA	NA	NA	NA	NA
WP_115276512.1|599731_600547_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101456648.1|600804_602238_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP022590	Mycoplasma bovis strain NADC54 chromosome, complete genome	1143450	688288	760102	1143450	transposase	Staphylococcus_phage(18.18%)	58	NA	NA
WP_101456648.1|688288_689722_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_075271025.1|690136_690583_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013456044.1|690729_691803_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013455971.1|691807_692167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013456280.1|692169_692409_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075271026.1|692572_693562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_115276505.1|695672_696350_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075271143.1|696398_696995_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075270940.1|697010_697442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075270941.1|697465_698137_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013456062.1|698149_698578_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075270942.1|698583_699597_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013455919.1|700796_702230_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_075271115.1|703083_705693_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075271152.1|705725_707936_-	putative immunoglobulin-blocking virulence protein	NA	NA	NA	NA	NA
WP_013455970.1|708122_710087_-	DNA ligase (NAD(+)) LigA	NA	Q332J4	Clostridium_botulinum_C_phage	31.7	3.9e-83
WP_013456498.1|710222_711470_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456083.1|711603_712791_+	phosphopentomutase	NA	NA	NA	NA	NA
WP_013456339.1|712879_713701_+	DNA-binding protein WhiA	NA	NA	NA	NA	NA
WP_115265600.1|713915_715100_-	BspA family leucine-rich repeat surface protein	NA	NA	NA	NA	NA
WP_013456160.1|715407_716115_+	MjaI family restriction endonuclease	NA	E3SIW0	Synechococcus_phage	35.1	2.6e-21
WP_013456269.1|716122_717181_-	site-specific DNA-methyltransferase	NA	S4VS49	Pandoravirus	29.4	2.8e-19
WP_013455983.1|717364_718327_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_080551570.1|718920_719949_-|transposase	IS30-like element ISMbov1 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.3	6.5e-21
WP_013456157.1|720381_720816_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_013456078.1|720817_721225_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_013455924.1|721450_721783_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456635.1|721784_722672_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	38.4	4.1e-48
WP_115265564.1|723046_725779_+	cation-transporting P-type ATPase	NA	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	29.3	5.9e-77
WP_013954870.1|726028_727891_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_013954871.1|727893_728598_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.8	1.1e-19
WP_013954872.1|728575_729724_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954873.1|729713_730604_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954874.1|730590_731478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954875.1|731503_733075_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	33.3	2.0e-69
WP_013954876.1|733119_734085_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_013954877.1|734106_734526_+	transcription antitermination protein NusB	NA	NA	NA	NA	NA
WP_013456406.1|734632_735235_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA	NA
WP_115276514.1|735541_735814_+	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_013954878.1|735840_736776_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_013954879.1|736776_737895_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_013954880.1|737898_740121_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954881.1|740150_741044_+	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_013954882.1|741094_741763_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013456602.1|742297_742906_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	37.6	8.6e-13
WP_013456480.1|742886_743075_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_004023890.1|743099_743450_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_013954884.1|743521_746941_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_115276515.1|747159_747825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954886.1|747875_748634_-	DUF1679 domain-containing protein	NA	NA	NA	NA	NA
WP_013954887.1|748710_750504_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	23.1	5.7e-20
WP_013954888.1|750579_752031_+	kinase	NA	NA	NA	NA	NA
WP_013954889.1|752114_752846_+	nitroreductase	NA	NA	NA	NA	NA
WP_013954890.1|752918_753713_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_115276530.1|753754_753955_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101456648.1|754151_755585_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_013455927.1|755811_756828_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	33.6	8.4e-37
WP_115276516.1|758716_760102_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP022590	Mycoplasma bovis strain NADC54 chromosome, complete genome	1143450	816986	877601	1143450	integrase,transposase	Enterobacteria_phage(22.22%)	51	863360:863384	869209:869233
WP_013456001.1|816986_818420_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_078086178.1|824678_825707_+|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.8	3.8e-21
WP_013954925.1|826706_827750_-	HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_013456526.1|827880_828315_-	50S ribosomal protein L15	NA	NA	NA	NA	NA
WP_013954926.1|828333_829029_-	30S ribosomal protein S5	NA	NA	NA	NA	NA
WP_013456329.1|829031_829382_-	50S ribosomal protein L18	NA	NA	NA	NA	NA
WP_013455947.1|829406_829946_-	50S ribosomal protein L6	NA	NA	NA	NA	NA
WP_013954927.1|829955_830351_-	30S ribosomal protein S8	NA	NA	NA	NA	NA
WP_013455972.1|830352_830538_-	type Z 30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_013022166.1|830540_831086_-	50S ribosomal protein L5	NA	NA	NA	NA	NA
WP_004023949.1|831088_831415_-	50S ribosomal protein L24	NA	NA	NA	NA	NA
WP_004023950.1|831427_831796_-	50S ribosomal protein L14	NA	NA	NA	NA	NA
WP_013456343.1|831799_832066_-	30S ribosomal protein S17	NA	NA	NA	NA	NA
WP_013456156.1|832065_832263_-	50S ribosomal protein L29	NA	NA	NA	NA	NA
WP_013456225.1|832262_832688_-	50S ribosomal protein L16	NA	NA	NA	NA	NA
WP_013954928.1|832687_833338_-	30S ribosomal protein S3	NA	NA	NA	NA	NA
WP_013954929.1|833340_833685_-	50S ribosomal protein L22	NA	NA	NA	NA	NA
WP_013954930.1|833687_833966_-	30S ribosomal protein S19	NA	NA	NA	NA	NA
WP_013954931.1|833965_834811_-	50S ribosomal protein L2	NA	NA	NA	NA	NA
WP_013456175.1|834880_835321_-	50S ribosomal protein L23	NA	NA	NA	NA	NA
WP_038582884.1|835320_836280_-	50S ribosomal protein L4	NA	NA	NA	NA	NA
WP_013954934.1|836300_837131_-	50S ribosomal protein L3	NA	NA	NA	NA	NA
WP_013954935.1|837184_837508_-	30S ribosomal protein S10	NA	NA	NA	NA	NA
WP_013456552.1|838106_838382_+	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_013954936.1|838405_838897_-	Holliday junction resolvase RecU	NA	A0A0S2MVB5	Bacillus_phage	33.5	5.7e-15
WP_075271100.1|839035_840028_+	recombinase RecA	NA	A0A2D1GPX2	Mycobacterium_phage	54.6	2.3e-95
WP_013456391.1|840113_840926_+	YmdB family metallophosphoesterase	NA	NA	NA	NA	NA
WP_013954939.1|840978_842064_-	M42 family peptidase	NA	NA	NA	NA	NA
WP_013954940.1|842311_843022_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_013456038.1|843058_843337_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_013455997.1|843343_843643_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_013456093.1|843835_844102_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013456268.1|844195_844618_-	MscL family protein	NA	NA	NA	NA	NA
WP_013954941.1|844805_845831_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_013954942.1|845814_846822_-	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_013954943.1|846990_847203_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_013954944.1|847225_847822_-	30S ribosomal protein S4	NA	NA	NA	NA	NA
WP_013954945.1|848119_849622_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954946.1|849660_852420_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.2	3.1e-110
WP_115265573.1|853043_857756_+	DUF4011 domain-containing protein	NA	NA	NA	NA	NA
WP_013954691.1|857820_859065_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	5.3e-09
WP_115276531.1|859855_860983_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_075271129.1|861106_862408_+	ATP-binding protein	NA	NA	NA	NA	NA
863360:863384	attL	GGAATTTACTAACGCTTGAGAACAG	NA	NA	NA	NA
WP_075270949.1|863911_864832_+|integrase	site-specific integrase	integrase	A8ATD6	Listeria_phage	48.3	1.6e-79
WP_013954950.1|864877_868075_-	type I restriction endonuclease subunit R	NA	NA	NA	NA	NA
WP_115276532.1|868083_869172_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	25.9	7.4e-07
WP_013954952.1|869275_871954_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	39.6	7.0e-91
869209:869233	attR	CTGTTCTCAAGCGTTAGTAAATTCC	NA	NA	NA	NA
WP_014829966.1|872457_873870_+|transposase	IS1634-like element ISMbov2 family transposase	transposase	NA	NA	NA	NA
WP_049773782.1|874002_874719_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954954.1|874775_875264_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954691.1|876356_877601_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	5.3e-09
>prophage 10
NZ_CP022590	Mycoplasma bovis strain NADC54 chromosome, complete genome	1143450	882588	970289	1143450	transposase,tRNA	Bacillus_phage(16.67%)	54	NA	NA
WP_075271178.1|882588_883980_+|tRNA	glutamate--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	25.2	6.6e-08
WP_013456580.1|883970_884372_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456621.1|884634_885783_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	52.4	3.8e-102
WP_013456411.1|886983_888342_-	signal recognition particle protein	NA	D6PHS7	uncultured_phage	29.0	8.7e-05
WP_013456099.1|888360_889185_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_013456213.1|889256_889496_-	hypothetical protein	NA	A0A172JI00	Bacillus_phage	40.9	4.6e-10
WP_101456714.1|889589_891002_-|transposase	IS1634-like element ISMbov2 family transposase	transposase	NA	NA	NA	NA
WP_101456648.1|891606_893040_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_013455927.1|893266_894283_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	33.6	8.4e-37
WP_075271002.1|894433_895435_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	23.1	1.7e-10
WP_075271001.1|895651_896836_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_013456619.1|897215_898520_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075271000.1|898519_899416_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456433.1|899519_900881_-	peptidase M17	NA	Q6GYZ8	Mycoplasma_phage	56.4	3.1e-103
WP_081375096.1|900955_902224_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954974.1|902279_904322_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_013456179.1|904487_906581_-	elongation factor G	NA	A0A1B0RXH7	Streptococcus_phage	25.2	1.8e-54
WP_013456121.1|906610_907081_-	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_004024001.1|907111_907525_-	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_013954975.1|907845_909063_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014829972.1|909100_910714_+	ABC-F family ATPase	NA	A0A2K9L3Z8	Tupanvirus	29.0	1.1e-54
WP_013456337.1|912488_913343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013456540.1|913820_915209_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_013954983.1|915643_917476_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.3	3.4e-28
WP_038582898.1|917486_919271_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.3	1.0e-29
WP_013954985.1|919494_920964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013456163.1|921222_921468_-	YneF family protein	NA	NA	NA	NA	NA
WP_013954986.1|921493_922582_-	M42 family peptidase	NA	NA	NA	NA	NA
WP_014829974.1|922684_923929_+|transposase	IS3 family transposase	transposase	Q6H9S6	Enterobacteria_phage	26.6	6.9e-09
WP_075271052.1|923973_931971_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954989.1|932126_936563_-	DNA-directed RNA polymerase subunit beta'	NA	A0A076FGB9	Aureococcus_anophage	23.5	3.2e-48
WP_013456481.1|936555_940191_-	DNA-directed RNA polymerase subunit beta	NA	W8W1V4	Invertebrate_iridescent_virus	26.9	2.0e-48
WP_004024017.1|941421_941793_-	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_101456715.1|941819_942341_-	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_013456027.1|942805_943531_+	leucine-rich repeat domain-containing protein	NA	NA	NA	NA	NA
WP_115276519.1|943542_945012_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SIS0	Klosneuvirus	36.9	6.8e-80
WP_013954990.1|945165_946056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954991.1|946100_948260_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_013954992.1|948406_950575_+	AAA family ATPase	NA	K4FB40	Cronobacter_phage	34.4	1.1e-107
WP_013954995.1|951817_953062_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	4.1e-09
WP_013954660.1|954200_955589_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_013456062.1|956658_957087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075270941.1|957099_957771_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075270940.1|957794_958226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075271143.1|958241_958838_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075271028.1|958886_959564_+	hypothetical protein	NA	NA	NA	NA	NA
WP_115276520.1|959615_961628_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
WP_013456390.1|961676_962666_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456280.1|962829_963069_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013455971.1|963071_963431_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456044.1|963435_964509_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075271025.1|964655_965102_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075271024.1|965085_967872_+	DUF87 domain-containing protein	NA	NA	NA	NA	NA
WP_115265524.1|969044_970289_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	5.3e-09
>prophage 11
NZ_CP022590	Mycoplasma bovis strain NADC54 chromosome, complete genome	1143450	1071431	1125206	1143450	integrase,transposase,tRNA	Staphylococcus_phage(25.0%)	46	1071098:1071149	1100613:1100664
1071098:1071149	attL	ATATTCATTAACAAAGCAAAAAGCACCACAAGTTAACTTGCGGCGCTTTTTG	NA	NA	NA	NA
WP_078086180.1|1071431_1072460_+|transposase	IS30-like element ISMbov1 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.3	6.5e-21
WP_013955061.1|1072670_1073678_+	membrane protein	NA	NA	NA	NA	NA
WP_115276536.1|1074297_1074708_+	hypothetical protein	NA	NA	NA	NA	NA
WP_115276521.1|1075362_1075824_+	hypothetical protein	NA	NA	NA	NA	NA
WP_115276522.1|1076843_1077689_+	hypothetical protein	NA	NA	NA	NA	NA
WP_115276523.1|1079384_1080236_+	hypothetical protein	NA	NA	NA	NA	NA
WP_115276524.1|1081476_1081659_-	hypothetical protein	NA	NA	NA	NA	NA
WP_115276525.1|1081829_1082438_+	hypothetical protein	NA	NA	NA	NA	NA
WP_115276537.1|1082740_1083139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013456123.1|1084001_1084751_+|integrase	integrase	integrase	NA	NA	NA	NA
WP_013955063.1|1085149_1086994_+	RNase J family beta-CASP ribonuclease	NA	NA	NA	NA	NA
WP_013955064.1|1087128_1088280_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014829996.1|1088469_1090887_+	DUF2779 domain-containing protein	NA	NA	NA	NA	NA
WP_013955066.1|1090904_1091213_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075271049.1|1091510_1092932_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_013955068.1|1092924_1094238_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_013955069.1|1094237_1094543_-|tRNA	glutamyl-tRNA(Gln) amidotransferase	tRNA	NA	NA	NA	NA
WP_013955070.1|1094548_1095403_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_013456616.1|1095414_1095993_-	segregation/condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	29.7	1.2e-11
WP_013955071.1|1095982_1096744_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_013456430.1|1096736_1097477_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_013456524.1|1097486_1097801_-	endonuclease	NA	NA	NA	NA	NA
WP_013456382.1|1097974_1099285_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_013456261.1|1099287_1099953_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_014829997.1|1100023_1100485_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013955073.1|1100772_1101906_-	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	32.2	3.0e-27
1100613:1100664	attR	ATATTCATTAACAAAGCAAAAAGCACCACAAGTTAACTTGCGGCGCTTTTTG	NA	NA	NA	NA
WP_013955074.1|1102143_1102485_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_013955075.1|1102658_1103894_-|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	33.2	3.3e-59
WP_013955076.1|1103904_1104507_-|tRNA	tRNA-binding protein	tRNA	NA	NA	NA	NA
WP_013456246.1|1104568_1105471_+	DegV domain-containing protein	NA	NA	NA	NA	NA
WP_014829999.1|1105631_1105865_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_013955078.1|1105904_1106627_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_013456073.1|1106626_1107703_-	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_013955080.1|1107828_1108401_-	cell division protein Fic	NA	NA	NA	NA	NA
WP_013955081.1|1108422_1109844_-	YitT family protein	NA	NA	NA	NA	NA
WP_013954660.1|1111298_1112687_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_013955084.1|1113001_1114969_+	type IIA DNA topoisomerase subunit B	NA	G3M9Z3	Bacillus_virus	41.5	8.7e-131
WP_013955085.1|1115091_1115406_+	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	39.0	1.7e-12
WP_013955086.1|1115458_1115905_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	37.4	1.8e-12
WP_115276526.1|1116394_1117783_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_013955088.1|1118805_1120479_+|transposase	IS1634-like element ISMbov3 family transposase	transposase	NA	NA	NA	NA
WP_115265593.1|1120783_1121773_-	BspA family leucine-rich repeat surface protein	NA	NA	NA	NA	NA
WP_115276527.1|1121892_1122096_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013456532.1|1122232_1123192_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_013955092.1|1123387_1123783_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013955093.1|1123961_1125206_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.3	1.1e-09
