The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP022900	Staphylococcus aureus strain 468 chromosome, complete genome	2813963	216589	287294	2813963	holin,transposase,protease	Staphylococcus_virus(20.0%)	58	NA	NA
WP_001801269.1|216589_217732_+|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000556257.1|218042_219455_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000215220.1|219715_220072_-	DUF488 domain-containing protein	NA	NA	NA	NA	NA
WP_000773985.1|220228_220402_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000954802.1|220426_221572_-	nitric oxide dioxygenase	NA	NA	NA	NA	NA
WP_001791329.1|221726_221834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001031872.1|222144_223098_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_115283814.1|223418_224948_-	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	52.0	5.3e-11
WP_000823232.1|225311_226247_+	nucleoside hydrolase	NA	NA	NA	NA	NA
WP_000531477.1|228665_229133_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_000815795.1|229155_229434_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_000120115.1|229660_230920_+	PTS galactitol transporter subunit IIC	NA	NA	NA	NA	NA
WP_000646194.1|230937_231993_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_000230358.1|231994_232141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000645611.1|232164_233208_+	galactitol-1-phosphate 5-dehydrogenase	NA	E3SJ82	Synechococcus_phage	24.6	6.0e-14
WP_000638469.1|233735_234452_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000610169.1|234444_235470_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_000169001.1|235491_237186_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_000598264.1|238155_239325_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_000872486.1|239600_240317_+	D-ribitol-5-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000610203.1|240309_241335_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_000240920.1|241356_243045_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_000975347.1|243077_244802_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	37.4	2.1e-11
WP_000277709.1|245087_246734_+|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	99.8	7.9e-295
WP_000608835.1|246852_247527_+	iron-sulfur cluster repair di-iron protein ScdA	NA	NA	NA	NA	NA
WP_000925396.1|247792_249532_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	31.5	2.0e-62
WP_000645453.1|249534_250275_+	DNA-binding response regulator	NA	NA	NA	NA	NA
WP_001792906.1|250387_250831_+|holin	antiholin-like murein hydrolase modulator LrgA	holin	NA	NA	NA	NA
WP_000607067.1|250823_251525_+|holin	antiholin-like protein LrgB	holin	NA	NA	NA	NA
WP_000062636.1|251865_254157_+	nitric oxide reductase	NA	NA	NA	NA	NA
WP_000922328.1|254382_255087_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000527262.1|255233_256025_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000163995.1|256040_257477_+	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	26.0	1.3e-30
WP_000031265.1|257971_258733_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_031788454.1|258751_258886_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000182742.1|258983_259898_-	ribokinase	NA	NA	NA	NA	NA
WP_000747873.1|259925_260330_-	D-ribose pyranase	NA	NA	NA	NA	NA
WP_000029204.1|260344_261226_-	ribose transporter RbsU	NA	NA	NA	NA	NA
WP_000757884.1|261457_262456_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_001159764.1|262835_263228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001066551.1|263356_264733_-	MFS transporter	NA	NA	NA	NA	NA
WP_000337379.1|264966_265959_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000736790.1|266284_267235_+	glycine-glycine endopeptidase LytM	NA	V5R8R0	Arthrobacter_phage	42.7	1.5e-16
WP_000570080.1|267286_267946_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.0	5.8e-23
WP_000806123.1|267959_268880_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000848773.1|268876_270043_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000038530.1|270110_271634_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000751212.1|271963_272857_-	CHAP domain-containing protein	NA	NA	NA	NA	NA
WP_001240826.1|273104_273398_+	WXG100 family type VII secretion effector EsxA	NA	NA	NA	NA	NA
WP_000277741.1|273691_275338_+|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
WP_000728940.1|275396_278426_+	type VII secretion protein EsaA	NA	NA	NA	NA	NA
WP_000928937.1|278425_278884_+	type VII secretion protein EssA	NA	NA	NA	NA	NA
WP_001071606.1|278855_279098_+	type VII secretion protein EsaB	NA	NA	NA	NA	NA
WP_000240329.1|279110_280445_+	type VII secretion protein EssB	NA	NA	NA	NA	NA
WP_000549309.1|280466_284915_+	type VII secretion protein EssC	NA	V5UPA0	Mycobacterium_phage	23.7	1.7e-28
WP_000593835.1|284917_285184_+	YwqI/YxiC family protein	NA	NA	NA	NA	NA
WP_000066177.1|285206_285602_+	DUF5082 family protein	NA	NA	NA	NA	NA
WP_000540848.1|285623_287294_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP022900	Staphylococcus aureus strain 468 chromosome, complete genome	2813963	357866	373796	2813963	coat,terminase,integrase	Staphylococcus_phage(90.0%)	25	359402:359419	374503:374520
WP_001052483.1|357866_358058_-	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	4.9e-23
WP_001261460.1|358301_358598_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_000934799.1|358618_359122_+	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_000897044.1|359173_359416_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
359402:359419	attL	AAAGAAGAACAATAATAT	NA	NA	NA	NA
WP_000400841.1|359647_360367_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q4ZE81	Staphylococcus_phage	29.8	3.7e-23
WP_000270135.1|360479_361694_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	97.3	3.3e-221
WP_000230361.1|361854_362478_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001611932.1|362626_362791_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001138305.1|362791_363064_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	94.4	1.2e-43
WP_000784892.1|363075_363249_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001231376.1|363215_363419_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_000403837.1|363420_363804_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.1	4.8e-62
WP_001103967.1|363804_364131_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	96.3	3.5e-53
WP_001002709.1|364195_365065_+	hypothetical protein	NA	Q4ZE74	Staphylococcus_phage	96.2	5.3e-165
WP_000447468.1|365078_366788_+	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	92.8	8.2e-303
WP_000356942.1|367097_367478_+	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	96.8	1.7e-67
WP_001019762.1|367474_368116_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	92.5	4.7e-110
WP_001288442.1|368823_369168_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	91.7	1.3e-50
WP_000214170.1|369198_369852_+	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	99.5	7.6e-116
WP_000771361.1|369904_370432_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	100.0	6.8e-91
WP_001656917.1|370563_370776_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	97.1	5.4e-31
WP_001293071.1|370772_371342_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	98.4	4.6e-101
WP_000801980.1|371618_372587_+	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	2.7e-24
WP_073392942.1|372728_373166_+	DUF3102 domain-containing protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	58.2	9.8e-27
WP_000813311.1|373283_373796_+	hypothetical protein	NA	Q4ZE83	Staphylococcus_phage	100.0	1.4e-69
374503:374520	attR	AAAGAAGAACAATAATAT	NA	NA	NA	NA
>prophage 3
NZ_CP022900	Staphylococcus aureus strain 468 chromosome, complete genome	2813963	666747	717744	2813963	bacteriocin,transposase	Staphylococcus_phage(28.57%)	48	NA	NA
WP_000121211.1|666747_667695_-|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	100.0	1.1e-184
WP_000980140.1|668187_669255_+	membrane protein	NA	NA	NA	NA	NA
WP_001030763.1|669405_670449_+	alpha/beta hydrolase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	27.1	3.8e-16
WP_000198502.1|670777_671206_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000940129.1|671403_671910_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000802949.1|672022_672946_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_001166499.1|672961_673636_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001061270.1|673628_674669_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000153733.1|674815_675577_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.0	3.2e-33
WP_000009406.1|675566_677456_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000491755.1|678071_678689_+	DUF47 domain-containing protein	NA	NA	NA	NA	NA
WP_000120368.1|678704_679712_+	inorganic phosphate transporter	NA	NA	NA	NA	NA
WP_000731642.1|680298_681096_-	LysM peptidoglycan-binding domain-containing protein	NA	C1KFN7	Lactobacillus_virus	35.8	2.1e-06
WP_000081597.1|681456_682101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001090984.1|685080_685440_+	HTH-type transcriptional regulator SarX	NA	NA	NA	NA	NA
WP_000532966.1|685629_686346_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_000833480.1|686345_686819_+	cupin	NA	A0A291AU44	Pandoravirus	38.7	4.6e-14
WP_031788497.1|686910_687027_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000865619.1|687171_687816_+	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_000687413.1|687933_688800_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000367064.1|688931_690152_+	MFS transporter	NA	NA	NA	NA	NA
WP_000158021.1|690148_690616_+	DUF456 domain-containing protein	NA	NA	NA	NA	NA
WP_001105942.1|692123_692798_+|transposase	IS6-like element ISSau6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	88.4	1.3e-113
WP_001035802.1|692832_693045_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000120605.1|693760_694075_+	As(III)-sensing metalloregulatory transcriptional repressor ArsR	NA	A0A2H4PQT4	Staphylococcus_phage	73.1	4.7e-39
WP_000153633.1|694074_695364_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	81.1	5.6e-187
WP_000358995.1|695381_695777_+	thioredoxin-dependent arsenate reductase	NA	A0A2H4PQT9	Staphylococcus_phage	86.3	8.5e-62
WP_000726502.1|696156_696450_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000713732.1|696524_698459_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000831610.1|698462_698774_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000593106.1|698785_699412_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.7	6.1e-22
WP_000277741.1|699773_701420_+|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
WP_001582045.1|701892_702219_+	recombinase	NA	NA	NA	NA	NA
WP_000273007.1|702285_702786_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000145511.1|703150_704011_+	replication initiation protein	NA	NA	NA	NA	NA
WP_000761344.1|704097_704439_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001002795.1|704653_704749_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000843733.1|705298_706042_-	DUF536 domain-containing protein	NA	NA	NA	NA	NA
WP_160175452.1|706349_706835_+	replication protein A	NA	NA	NA	NA	NA
WP_000998976.1|706831_707257_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000397995.1|708473_708797_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001791613.1|709025_709118_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000377738.1|709419_710241_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000838599.1|710365_711361_+	YeiH family protein	NA	NA	NA	NA	NA
WP_000690626.1|711695_712271_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	2.9e-42
WP_000069452.1|712537_714583_+	copper-translocating P-type ATPase CopB	NA	E4ZFI9	Streptococcus_phage	29.2	2.3e-65
WP_000277154.1|714597_716031_+	multi-copper oxidase Mco	NA	NA	NA	NA	NA
WP_000277738.1|716097_717744_-|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	98.4	1.0e-289
>prophage 4
NZ_CP022900	Staphylococcus aureus strain 468 chromosome, complete genome	2813963	751822	759642	2813963		Hokovirus(16.67%)	10	NA	NA
WP_000244416.1|751822_752878_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|752877_753564_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|753538_754012_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093552.1|754353_754794_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637686.1|755073_755658_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062968.1|755756_756470_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|756473_756893_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|756894_757563_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604508.1|757913_758507_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	6.8e-39
WP_001217804.1|758490_759642_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 5
NZ_CP022900	Staphylococcus aureus strain 468 chromosome, complete genome	2813963	771614	785752	2813963		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000663016.1|771614_772673_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.5	5.7e-20
WP_000197262.1|772831_773374_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429002.1|773925_774843_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	8.2e-07
WP_031788440.1|774933_775035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193750.1|775112_776618_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930016.1|776957_777458_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
WP_001068491.1|777477_778344_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|779145_779544_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|779506_781612_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|781731_782703_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000876311.1|783079_784051_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
WP_001245566.1|784037_784994_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	60.0	5.5e-06
WP_000616865.1|784990_785752_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
>prophage 6
NZ_CP022900	Staphylococcus aureus strain 468 chromosome, complete genome	2813963	955719	1004543	2813963	tRNA,transposase,protease,holin	Bacillus_virus(22.22%)	44	NA	NA
WP_000121211.1|955719_956667_-|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	100.0	1.1e-184
WP_073392975.1|956781_958251_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001067041.1|958301_959288_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.0	1.8e-15
WP_000427776.1|959290_960271_+	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.1	2.7e-16
WP_001574526.1|960263_960914_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001180271.1|960925_961807_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_094409958.1|961895_963463_-|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.0e-49
WP_001794171.1|963758_965405_+|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	98.4	1.7e-289
WP_000448933.1|965431_966421_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|966715_967111_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_115283833.1|967481_968201_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959276.1|968321_969308_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082722.1|969355_971164_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	9.3e-47
WP_000896691.1|971623_972430_-	DsbA family protein	NA	NA	NA	NA	NA
WP_000214067.1|972452_972818_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000224620.1|972921_973515_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242102.1|973700_974048_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|974064_974700_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|974716_975526_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669938.1|975522_976377_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062404.1|976397_977783_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395156.1|977792_979637_+	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_000933195.1|979914_980685_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|980880_981966_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570704.1|982307_983876_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000889176.1|984018_984777_+	esterase family protein	NA	NA	NA	NA	NA
WP_001060545.1|984942_985668_+	hypothetical protein	NA	NA	NA	NA	NA
WP_115283834.1|985669_986521_+	base excision DNA repair protein	NA	NA	NA	NA	NA
WP_000600387.1|987262_987772_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001794241.1|987884_989093_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258649.1|989052_990228_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_115283835.1|990659_992144_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001794242.1|992124_992385_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049957.1|992384_993947_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	2.2e-36
WP_000928413.1|994248_995052_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001794169.1|995270_997595_+|protease	serine protease	protease	W5SAB9	Pithovirus	26.8	4.0e-10
WP_000021872.1|997611_998970_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414169.1|999108_1000620_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|1001108_1001678_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876825.1|1001887_1002106_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668820.1|1002186_1003173_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1003371_1003548_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|1003562_1004165_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_099119695.1|1004465_1004543_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
>prophage 7
NZ_CP022900	Staphylococcus aureus strain 468 chromosome, complete genome	2813963	1041469	1049942	2813963		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861576.1|1041469_1041952_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_001010391.1|1041938_1043063_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174050.1|1043066_1043771_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.6	7.3e-48
WP_000848351.1|1043770_1044034_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666808.1|1044035_1044707_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032734.1|1044699_1046889_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.2	5.1e-140
WP_000483716.1|1046867_1048352_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.4	8.5e-46
WP_000030814.1|1048344_1049373_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	7.6e-62
WP_000238673.1|1049375_1049942_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	3.6e-29
>prophage 8
NZ_CP022900	Staphylococcus aureus strain 468 chromosome, complete genome	2813963	1287914	1330555	2813963	tRNA,transposase,capsid	Staphylococcus_phage(40.0%)	42	NA	NA
WP_001001521.1|1287914_1289459_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_000282386.1|1289459_1289825_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000842278.1|1289851_1290343_+	energy coupling factor transporter S component ThiW	NA	NA	NA	NA	NA
WP_000073334.1|1290645_1293264_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	3.8e-41
WP_000516249.1|1293276_1295286_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.2	4.1e-59
WP_001077635.1|1295291_1295834_+	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_001103747.1|1296308_1297127_+	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	3.1e-26
WP_000417379.1|1297256_1298753_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_001218603.1|1298910_1300584_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_000136948.1|1300733_1301648_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001574397.1|1301665_1302601_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_000561357.1|1302615_1302849_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_000448078.1|1303070_1303547_-	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	38.0	1.2e-22
WP_000068622.1|1303658_1304897_+	GTPase HflX	NA	NA	NA	NA	NA
WP_000652040.1|1304915_1306154_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000624945.1|1306397_1306766_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001126604.1|1306784_1308125_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_001659797.1|1308618_1308816_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	1.7e-10
WP_078367270.1|1309107_1309644_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	43.6	1.3e-28
WP_000746372.1|1309624_1310128_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_001255381.1|1310236_1310593_-	cystatin-like fold lipoprotein	NA	NA	NA	NA	NA
WP_000810443.1|1310648_1311239_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000247474.1|1311245_1312292_-	CHAP domain-containing protein	NA	A0A1X9I9L1	Staphylococcus_phage	36.9	8.1e-19
WP_000121211.1|1312709_1313657_-|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	100.0	1.1e-184
WP_001251205.1|1315207_1316566_-	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	29.9	4.0e-42
WP_001049264.1|1316619_1319115_-	DUF87 domain-containing protein	NA	NA	NA	NA	NA
WP_000358146.1|1319149_1319533_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000015642.1|1319544_1319805_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000692007.1|1319809_1320865_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_000388596.1|1320925_1321951_-	replication initiation factor domain-containing protein	NA	NA	NA	NA	NA
WP_000386891.1|1322192_1322495_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000805733.1|1322508_1322829_-	DUF961 family protein	NA	NA	NA	NA	NA
WP_000134547.1|1322979_1323264_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001071312.1|1323949_1324162_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.5	3.6e-19
WP_001002343.1|1324458_1324665_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	56.7	1.9e-12
WP_031788482.1|1325366_1325477_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|1325869_1326055_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_000121211.1|1326266_1327214_-|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	100.0	1.1e-184
WP_000477487.1|1327640_1328057_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001791412.1|1328487_1328694_-|transposase	transposase	transposase	A0A059NT77	Lactococcus_phage	58.1	4.5e-14
WP_000585095.1|1329577_1329829_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077670290.1|1329889_1330555_+|capsid	minor capsid protein	capsid	A0A1J0MF61	Staphylococcus_phage	53.0	4.6e-60
>prophage 9
NZ_CP022900	Staphylococcus aureus strain 468 chromosome, complete genome	2813963	1611949	1620261	2813963	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1611949_1612735_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924211.1|1612860_1613751_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062173.1|1613760_1615107_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	1.4e-55
WP_000683921.1|1615220_1616321_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	3.0e-08
WP_000624581.1|1616323_1617001_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1617131_1618238_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217253.1|1618461_1620261_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 10
NZ_CP022900	Staphylococcus aureus strain 468 chromosome, complete genome	2813963	1689697	1698740	2813963	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1689697_1690216_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595001.1|1690237_1692511_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	6.2e-64
WP_000749802.1|1692713_1694993_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1695267_1695528_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1695546_1696686_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|1696708_1697734_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1697735_1698740_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 11
NZ_CP022900	Staphylococcus aureus strain 468 chromosome, complete genome	2813963	1828468	1897375	2813963	tRNA,protease	Staphylococcus_phage(93.02%)	64	NA	NA
WP_001050520.1|1828468_1835038_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	88.7	1.7e-295
WP_000836472.1|1835361_1835673_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	96.1	4.5e-50
WP_001108722.1|1835694_1838109_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	98.8	0.0e+00
WP_001025064.1|1838400_1839582_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_000526541.1|1839692_1840646_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
WP_000764425.1|1840642_1841206_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	1.1e-99
WP_000757543.1|1841324_1841726_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266099.1|1842298_1843126_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|1843128_1843248_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196351.1|1843359_1844361_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.1	5.0e-183
WP_001008556.1|1844482_1844947_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	97.4	1.9e-68
WP_001159032.1|1844959_1846141_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493891.1|1846151_1846784_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	8.4e-112
WP_001819953.1|1846790_1847822_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.3	5.8e-195
WP_001261683.1|1848314_1849817_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
WP_000221181.1|1850459_1850774_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	97.1	1.7e-52
WP_000989104.1|1850773_1852066_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	95.1	2.6e-216
WP_001032833.1|1852152_1853007_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1853282_1853507_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671059.1|1853705_1854176_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	85.8	7.7e-70
WP_001152695.1|1854288_1854732_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030476.1|1854718_1855162_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.4	2.4e-49
WP_001168914.1|1855459_1856095_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000492901.1|1856261_1856882_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096494.1|1857339_1858053_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091444.1|1858311_1858614_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1858868_1859234_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623481.1|1859230_1859584_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	97.4	4.2e-20
WP_000453316.1|1859833_1860667_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.6	1.2e-158
WP_000366165.1|1860878_1861787_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	9.8e-138
WP_000933819.1|1861911_1863105_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000109909.1|1863476_1865069_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_001801476.1|1865361_1866108_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.2	3.3e-139
WP_000672010.1|1866112_1866586_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	9.5e-84
WP_000718107.1|1866651_1866909_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778539.1|1866905_1867907_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	96.7	8.5e-183
WP_000348372.1|1867911_1869390_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.2	2.4e-282
WP_016186903.1|1869548_1870004_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	94.5	3.5e-75
WP_001794016.1|1870305_1870956_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	1.0e-51
WP_000070654.1|1871036_1872032_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	3.8e-74
WP_000669038.1|1872107_1872734_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	4.5e-81
WP_000627550.1|1872774_1873119_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	5.1e-55
WP_000414222.1|1873216_1873789_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
WP_001093574.1|1873937_1875305_-	FRG domain-containing protein	NA	NA	NA	NA	NA
WP_000125075.1|1875304_1875874_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	54.8	2.2e-39
WP_000747804.1|1876066_1876513_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001801861.1|1876963_1877059_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791232.1|1877181_1877283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001037039.1|1877457_1877901_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000731421.1|1877900_1878344_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000182553.1|1879310_1881731_+	polysaccharide lyase 8 family protein	NA	NA	NA	NA	NA
WP_001819963.1|1881856_1882216_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000619920.1|1882443_1882893_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001053714.1|1882935_1884546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000095390.1|1884560_1884860_+	secretion protein	NA	NA	NA	NA	NA
WP_000413389.1|1885121_1886939_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000072622.1|1886975_1888130_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	36.3	7.8e-39
WP_001794363.1|1888122_1889862_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	98.6	3.2e-286
WP_001038742.1|1890041_1890761_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	98.3	1.0e-129
WP_001038734.1|1890930_1891647_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	97.1	6.6e-129
WP_001038766.1|1892692_1893409_-|protease	serine protease	protease	A0A2H4PQN5	Staphylococcus_phage	62.6	5.5e-83
WP_001039022.1|1893532_1894252_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	93.7	6.4e-124
WP_000595635.1|1895266_1895782_+	membrane protein	NA	NA	NA	NA	NA
WP_000711499.1|1896028_1897375_+	DUF4041 domain-containing protein	NA	M1NRY5	Streptococcus_phage	51.1	2.5e-65
>prophage 12
NZ_CP022900	Staphylococcus aureus strain 468 chromosome, complete genome	2813963	1932348	2000892	2813963	tRNA,holin,protease,terminase,portal,tail,head,integrase,capsid	Staphylococcus_phage(83.33%)	81	1969732:1969746	2002449:2002463
WP_000181394.1|1932348_1932819_-|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_001793998.1|1932823_1933966_-|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_001144055.1|1934101_1934830_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
WP_000649898.1|1934816_1936274_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_000063551.1|1936532_1937594_-	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_000110011.1|1946422_1946869_-	peroxide-responsive transcriptional repressor PerR	NA	NA	NA	NA	NA
WP_115283866.1|1946965_1947916_-	hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
WP_000939530.1|1947921_1948377_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_001011603.1|1948457_1949747_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_001236371.1|1950039_1951134_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_000597238.1|1951324_1953061_-	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
WP_000251252.1|1953351_1953894_-	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_000284755.1|1954196_1955234_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000379091.1|1955385_1956363_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_000886472.1|1956623_1957460_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000535849.1|1957468_1958986_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_001294033.1|1959000_1959291_-	YfhH family protein	NA	NA	NA	NA	NA
WP_001124422.1|1959292_1960111_-	recombination regulator RecX	NA	NA	NA	NA	NA
WP_000830380.1|1960371_1961181_-	monofunctional peptidoglycan glycosyltransferase SgtB	NA	NA	NA	NA	NA
WP_000163281.1|1961521_1962037_-	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
WP_001005407.1|1962166_1962328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_100250272.1|1962674_1962755_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000278830.1|1962824_1963562_-	hypothetical protein	NA	A7YGY5	Staphylococcus_virus	99.6	7.5e-136
WP_000238963.1|1963568_1964363_-	phosphatidylinositol kinase	NA	Q4ZAU0	Staphylococcus_virus	100.0	8.3e-149
WP_000861038.1|1964853_1965609_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|1965620_1965875_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|1965926_1966034_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|1966086_1966263_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000539688.1|1966412_1966709_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040261.1|1966766_1967054_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_001153681.1|1967100_1967253_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_115283867.1|1967242_1971028_-	hypothetical protein	NA	A0EX05	Staphylococcus_phage	99.8	0.0e+00
1969732:1969746	attL	ATTTTTCAACATCAT	NA	NA	NA	NA
WP_000567413.1|1971043_1972528_-|tail	phage tail protein	tail	A0EX04	Staphylococcus_phage	100.0	4.5e-297
WP_115283868.1|1972524_1977054_-|tail	phage tail tape measure protein	tail	A0EX03	Staphylococcus_phage	99.1	0.0e+00
WP_001096355.1|1977298_1977649_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_071621395.1|1977698_1977923_-	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_000268736.1|1977964_1978609_-|tail	phage tail protein	tail	Q6R871	Staphylococcus_virus	100.0	6.5e-120
WP_000565498.1|1978609_1979017_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114341.1|1979013_1979418_-	hypothetical protein	NA	A0A1W6JPJ1	Staphylococcus_phage	100.0	2.5e-69
WP_000755150.1|1979414_1979777_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000150936.1|1979760_1980045_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|1980034_1980319_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_031897300.1|1980338_1981484_-|capsid	phage major capsid protein	capsid	A0A1W6JPL4	Staphylococcus_phage	99.5	3.6e-214
WP_000861912.1|1981506_1982244_-|protease	Clp protease ClpP	protease	A0A1W6JPK0	Staphylococcus_phage	99.2	5.2e-129
WP_000025266.1|1982227_1983415_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	99.7	3.0e-219
WP_000625096.1|1983430_1985092_-|terminase	terminase large subunit	terminase	A0A075M4D3	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|1985088_1985433_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988330.1|1985562_1985862_-	HNH endonuclease	NA	G4KNP8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|1986093_1986510_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000265041.1|1986537_1986738_-	DUF1514 family protein	NA	R9QT57	Staphylococcus_phage	100.0	1.1e-28
WP_001005262.1|1986737_1987388_-	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	100.0	8.9e-117
WP_000595234.1|1987546_1987696_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	98.0	6.3e-18
WP_000483477.1|1987688_1987925_-	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
WP_000195831.1|1987949_1988186_-	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	100.0	1.1e-35
WP_000185638.1|1988222_1988750_-	dUTP pyrophosphatase	NA	A7TWB1	Staphylococcus_phage	100.0	7.8e-95
WP_031905179.1|1988742_1988991_-	DUF1024 family protein	NA	A0A2I6PDI5	Staphylococcus_phage	98.8	1.2e-37
WP_015980409.1|1989031_1989280_-	hypothetical protein	NA	S4V683	Staphylococcus_phage	100.0	3.2e-43
WP_115283869.1|1989280_1989640_-	hypothetical protein	NA	B2ZYW3	Staphylococcus_phage	98.3	1.9e-60
WP_115283870.1|1989640_1989826_-	DUF3113 family protein	NA	A0A0H4IPE3	Staphylococcus_phage	95.1	7.8e-26
WP_000049814.1|1989830_1990235_-	DUF1064 domain-containing protein	NA	Q6R835	Staphylococcus_virus	99.3	7.1e-72
WP_001123688.1|1990244_1990466_-	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_000803056.1|1990633_1991413_-	ATP-binding protein	NA	Q9G022	Staphylococcus_virus	100.0	2.4e-145
WP_000190252.1|1991423_1992194_-	hypothetical protein	NA	A0A1X9H0A8	Staphylococcus_phage	98.8	1.2e-120
WP_000414755.1|1992259_1992541_+	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
WP_001199431.1|1992679_1993351_-	hypothetical protein	NA	Q9G025	Staphylococcus_virus	98.7	3.4e-127
WP_000704705.1|1993363_1993915_-	single-stranded DNA-binding protein	NA	Q4ZBM4	Staphylococcus_phage	100.0	3.4e-101
WP_000134097.1|1993943_1994732_-	ATP-binding protein	NA	Q4ZBM5	Staphylococcus_phage	100.0	2.6e-142
WP_000815402.1|1994724_1994946_-	DUF2483 family protein	NA	B2ZYV2	Staphylococcus_phage	100.0	3.2e-34
WP_000291089.1|1994955_1995216_-	DUF1108 family protein	NA	Q4ZBM7	Staphylococcus_phage	100.0	1.2e-43
WP_000066011.1|1995311_1995473_-	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
WP_000594789.1|1995465_1995687_-	hypothetical protein	NA	B2ZYU8	Staphylococcus_phage	100.0	8.7e-32
WP_000395455.1|1995757_1995988_+	hypothetical protein	NA	C8CGY3	Staphylococcus_phage	100.0	2.3e-35
WP_001148585.1|1996163_1996904_-	antirepressor	NA	A0A0N7E0R7	Staphylococcus_phage	100.0	6.3e-135
WP_000394410.1|1996963_1997446_+	hypothetical protein	NA	A0A0N9BAX2	Staphylococcus_phage	100.0	1.1e-82
WP_000438352.1|1997546_1997726_-	hypothetical protein	NA	A0A0N9BAV3	Staphylococcus_phage	100.0	1.7e-25
WP_001121116.1|1997739_1997976_-	helix-turn-helix transcriptional regulator	NA	A0A0N9BAY2	Staphylococcus_phage	100.0	1.5e-37
WP_000333630.1|1998127_1998442_+	helix-turn-helix transcriptional regulator	NA	A0A0N9BAW4	Staphylococcus_phage	100.0	9.8e-53
WP_000525012.1|1998454_1998916_+	hypothetical protein	NA	Q4ZBN7	Staphylococcus_phage	99.3	4.6e-83
WP_001077638.1|1998936_1999428_+	hypothetical protein	NA	Q4ZBN8	Staphylococcus_phage	100.0	7.5e-84
WP_000337827.1|1999553_1999733_-	hypothetical protein	NA	Q4ZBP0	Staphylococcus_phage	100.0	3.7e-25
WP_001145721.1|1999845_2000892_+|integrase	site-specific integrase	integrase	Q4ZE08	Staphylococcus_virus	100.0	4.2e-201
2002449:2002463	attR	ATTTTTCAACATCAT	NA	NA	NA	NA
>prophage 13
NZ_CP022900	Staphylococcus aureus strain 468 chromosome, complete genome	2813963	2078076	2092410	2813963	integrase,terminase,coat	Staphylococcus_phage(68.42%)	22	2075708:2075727	2090432:2090451
2075708:2075727	attL	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
WP_000812237.1|2078076_2078304_-	hypothetical protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	47.4	1.9e-13
WP_001035597.1|2078722_2079427_+	toxic shock syndrome toxin TSST-1	NA	NA	NA	NA	NA
WP_001293073.1|2079581_2080151_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	98.4	3.5e-101
WP_000358778.1|2080147_2080489_-	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	100.0	1.7e-58
WP_000771368.1|2080491_2081019_-|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
WP_000448775.1|2081069_2081288_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000846285.1|2081305_2081884_-	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.4	1.4e-28
WP_001190608.1|2081895_2082237_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	98.2	7.1e-57
WP_115283873.1|2082780_2083404_-	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	94.7	5.0e-109
WP_000356937.1|2083400_2083781_-	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	100.0	6.9e-69
WP_115283874.1|2084092_2085802_-	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	99.8	0.0e+00
WP_001002721.1|2085815_2086685_-	hypothetical protein	NA	Q4ZE74	Staphylococcus_phage	99.3	6.0e-169
WP_001103930.1|2086748_2087066_-	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	58.2	1.6e-18
WP_000403839.1|2087066_2087450_-	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.1	9.7e-63
WP_001231378.1|2087451_2087655_-	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	97.0	7.5e-30
WP_000708433.1|2087639_2087795_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000481967.1|2087791_2088109_-	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	98.1	9.2e-51
WP_000153640.1|2088113_2088332_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	66.7	1.3e-19
WP_000620857.1|2088504_2089179_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JGT9	uncultured_Caudovirales_phage	45.8	1.6e-39
WP_000179345.1|2089192_2090365_+|integrase	site-specific integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	98.2	3.5e-220
WP_000240651.1|2090433_2092050_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	2.6e-157
2090432:2090451	attR	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
WP_000917289.1|2092125_2092410_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
