assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003354625.1_ASM335462v1	NZ_CP022900	Staphylococcus aureus strain 468 chromosome, complete genome	1	806580-806664	1	CRISPRCasFinder	no	cas3	cas3,csa3,DEDDh,DinG,WYL	Unclear	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	806606-806638|806606-806638	NZ_CP022900.1_1039941-1039973|NZ_CP022900.1_2372035-2372003	NA	1	1	Unclear	cas3,csa3,DEDDh,DinG,WYL	NA|33aa|up_1|NZ_CP022900.1_805020_805119_+,NA	NA|357aa|up_9|NZ_CP022900.1_795029_796100_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|352aa|up_8|NZ_CP022900.1_796417_797473_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|214aa|up_7|NZ_CP022900.1_797636_798278_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|289aa|up_6|NZ_CP022900.1_798421_799288_+	TIGR00762, DegV, EDD domain protein, DegV family	cas3|361aa|up_5|NZ_CP022900.1_799651_800734_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|225aa|up_4|NZ_CP022900.1_800726_801401_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|191aa|up_3|NZ_CP022900.1_801461_802034_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_2|NZ_CP022900.1_802447_804979_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|33aa|up_1|NZ_CP022900.1_805020_805119_+	NA	NA|370aa|up_0|NZ_CP022900.1_805293_806404_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|280aa|down_0|NZ_CP022900.1_807172_808012_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|down_1|NZ_CP022900.1_808185_808836_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|down_2|NZ_CP022900.1_808832_809069_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|down_3|NZ_CP022900.1_809337_811323_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|down_4|NZ_CP022900.1_811330_814177_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_5|NZ_CP022900.1_814787_815720_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|281aa|down_6|NZ_CP022900.1_815725_816568_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_7|NZ_CP022900.1_816575_817061_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_8|NZ_CP022900.1_817068_818508_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_9|NZ_CP022900.1_818574_819510_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase
GCF_003354625.1_ASM335462v1	NZ_CP022900	Staphylococcus aureus strain 468 chromosome, complete genome	2	864984-865063	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	CCGTCAGCTTCTGTGTTGGGGCCC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|187aa|up_9|NZ_CP022900.1_857958_858519_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP022900.1_858591_859209_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP022900.1_859364_859859_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP022900.1_860257_860680_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP022900.1_860827_861544_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP022900.1_861626_862166_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP022900.1_862315_862636_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP022900.1_862779_863136_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP022900.1_863293_863674_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP022900.1_863851_864730_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP022900.1_865320_865707_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP022900.1_865699_865996_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP022900.1_866245_867271_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP022900.1_867263_867959_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP022900.1_867976_868798_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP022900.1_869612_869807_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP022900.1_870040_870892_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP022900.1_871219_871981_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP022900.1_872078_873386_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NZ_CP022900.1_873491_874742_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_003354625.1_ASM335462v1	NZ_CP022900	Staphylococcus aureus strain 468 chromosome, complete genome	3	914104-914189	3	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	2	914134-914159|914134-914159	NZ_CP022900.1_2112391-2112416|NZ_CP022900.1_2172475-2172500	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|499aa|up_9|NZ_CP022900.1_902993_904490_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|NZ_CP022900.1_904482_904812_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP022900.1_904823_905252_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP022900.1_905244_907650_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP022900.1_907780_908164_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP022900.1_908227_908821_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP022900.1_909235_909613_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP022900.1_909974_911102_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP022900.1_911409_912600_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP022900.1_912708_913953_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP022900.1_914347_915277_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP022900.1_915518_916898_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP022900.1_916887_918093_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP022900.1_918443_919775_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP022900.1_920100_920676_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP022900.1_920680_921205_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP022900.1_921220_921796_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP022900.1_921955_925432_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP022900.1_925432_929086_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP022900.1_929251_930154_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_003354625.1_ASM335462v1	NZ_CP022900	Staphylococcus aureus strain 468 chromosome, complete genome	4	1215354-1215446	4	CRISPRCasFinder	no	cas3	cas3,csa3,DEDDh,DinG,WYL	Unclear	TAAGAAACAGTAATCAATAAATTGATAACT	30	0	0	NA	NA	NA	1	1	Unclear	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|215aa|up_9|NZ_CP022900.1_1205228_1205873_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|214aa|up_8|NZ_CP022900.1_1205879_1206521_+	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|63aa|up_7|NZ_CP022900.1_1206901_1207090_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|NZ_CP022900.1_1207532_1207907_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|up_5|NZ_CP022900.1_1207921_1209568_+	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	cas3|687aa|up_4|NZ_CP022900.1_1209757_1211818_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|191aa|up_3|NZ_CP022900.1_1212020_1212593_+	PRK04424, PRK04424, transcription factor FapR	NA|329aa|up_2|NZ_CP022900.1_1212597_1213584_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|NZ_CP022900.1_1213576_1214503_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|NZ_CP022900.1_1214495_1215230_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|NZ_CP022900.1_1215535_1215769_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|down_1|NZ_CP022900.1_1215884_1216616_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|down_2|NZ_CP022900.1_1216762_1220329_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|down_3|NZ_CP022900.1_1220328_1221579_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|NZ_CP022900.1_1221565_1221898_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|NZ_CP022900.1_1221923_1223291_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|NZ_CP022900.1_1223725_1224001_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_7|NZ_CP022900.1_1224188_1224692_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_8|NZ_CP022900.1_1224691_1225429_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_9|NZ_CP022900.1_1225531_1225882_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCF_003354625.1_ASM335462v1	NZ_CP022900	Staphylococcus aureus strain 468 chromosome, complete genome	5	1938258-1938385	5	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	38	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|132aa|up_7|NZ_CP022900.1_1930417_1930813_-,NA|51aa|up_6|NZ_CP022900.1_1931413_1931566_-,NA	NA|274aa|up_9|NZ_CP022900.1_1927559_1928381_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|462aa|up_8|NZ_CP022900.1_1928836_1930222_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_7|NZ_CP022900.1_1930417_1930813_-	NA	NA|51aa|up_6|NZ_CP022900.1_1931413_1931566_-	NA	NA|200aa|up_5|NZ_CP022900.1_1931590_1932190_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_4|NZ_CP022900.1_1932348_1932819_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|381aa|up_3|NZ_CP022900.1_1932823_1933966_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|up_2|NZ_CP022900.1_1934101_1934830_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_1|NZ_CP022900.1_1934816_1936274_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_0|NZ_CP022900.1_1936532_1937594_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_0|NZ_CP022900.1_1946422_1946869_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_1|NZ_CP022900.1_1946965_1947916_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|NZ_CP022900.1_1947921_1948377_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|NZ_CP022900.1_1948457_1949747_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_4|NZ_CP022900.1_1950039_1951134_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|579aa|down_5|NZ_CP022900.1_1951324_1953061_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_6|NZ_CP022900.1_1953351_1953894_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_7|NZ_CP022900.1_1954196_1955234_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_8|NZ_CP022900.1_1955385_1956363_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|279aa|down_9|NZ_CP022900.1_1956623_1957460_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
GCF_003354625.1_ASM335462v1	NZ_CP022900	Staphylococcus aureus strain 468 chromosome, complete genome	6	2021569-2021760	1	CRT	no	DEDDh	cas3,csa3,DEDDh,DinG,WYL	Unclear	NNTCTNTGTTGGGGCCCNCACC	22	2	9	2021590-2021626|2021648-2021681|2021648-2021681|2021648-2021681|2021648-2021681|2021648-2021681|2021648-2021681|2021648-2021681|2021648-2021681	NZ_CP022900.1_819872-819908|NZ_CP022900.1_257717-257684|NZ_CP022900.1_334390-334357|NZ_CP022900.1_773474-773441|NZ_CP022900.1_806645-806678|NZ_CP022900.1_1066156-1066189|NZ_CP022900.1_1760274-1760241|NZ_CP022900.1_2336641-2336674|NZ_CP022900.1_2479668-2479635	NA	3	3	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|37aa|up_9|NZ_CP022900.1_2012974_2013085_-,NA|31aa|up_5|NZ_CP022900.1_2016090_2016183_-,NA|49aa|down_0|NZ_CP022900.1_2022064_2022211_-	NA|37aa|up_9|NZ_CP022900.1_2012974_2013085_-	NA	NA|244aa|up_8|NZ_CP022900.1_2013170_2013902_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|up_7|NZ_CP022900.1_2013903_2015217_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|up_6|NZ_CP022900.1_2015508_2016009_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|up_5|NZ_CP022900.1_2016090_2016183_-	NA	DEDDh|185aa|up_4|NZ_CP022900.1_2016399_2016954_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|up_3|NZ_CP022900.1_2017020_2018091_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|up_2|NZ_CP022900.1_2018337_2018868_-	pfam11667, DUF3267, Putative zincin peptidase	NA|454aa|up_1|NZ_CP022900.1_2019037_2020399_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|316aa|up_0|NZ_CP022900.1_2020479_2021427_-	PRK13337, PRK13337, putative lipid kinase; Reviewed	NA|49aa|down_0|NZ_CP022900.1_2022064_2022211_-	NA	NA|476aa|down_1|NZ_CP022900.1_2022249_2023677_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|486aa|down_2|NZ_CP022900.1_2023689_2025147_-	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|101aa|down_3|NZ_CP022900.1_2025148_2025451_-	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|513aa|down_4|NZ_CP022900.1_2025817_2027356_+	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|400aa|down_5|NZ_CP022900.1_2027444_2028644_-	COG4851, CamS, Protein involved in sex pheromone biosynthesis [General function prediction only]	NA|668aa|down_6|NZ_CP022900.1_2028656_2030660_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|731aa|down_7|NZ_CP022900.1_2030663_2032856_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|231aa|down_8|NZ_CP022900.1_2032852_2033545_-	COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]	NA|101aa|down_9|NZ_CP022900.1_2033727_2034030_-	COG4496, COG4496, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_003354625.1_ASM335462v1	NZ_CP022900	Staphylococcus aureus strain 468 chromosome, complete genome	7	2088350-2088438	6	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	GTTTTTGACTGACTTCTCAATCA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|127aa|up_8|NZ_CP022900.1_2083400_2083781_-,NA|128aa|up_4|NZ_CP022900.1_2087066_2087450_-,NA|68aa|up_3|NZ_CP022900.1_2087451_2087655_-,NA|52aa|up_2|NZ_CP022900.1_2087639_2087795_-,NA	NA|208aa|up_9|NZ_CP022900.1_2082780_2083404_-	pfam16560, SAPI, Putative mobile pathogenicity island	NA|127aa|up_8|NZ_CP022900.1_2083400_2083781_-	NA	NA|570aa|up_7|NZ_CP022900.1_2084092_2085802_-	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|290aa|up_6|NZ_CP022900.1_2085815_2086685_-	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|106aa|up_5|NZ_CP022900.1_2086748_2087066_-	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|128aa|up_4|NZ_CP022900.1_2087066_2087450_-	NA	NA|68aa|up_3|NZ_CP022900.1_2087451_2087655_-	NA	NA|52aa|up_2|NZ_CP022900.1_2087639_2087795_-	NA	NA|106aa|up_1|NZ_CP022900.1_2087791_2088109_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|73aa|up_0|NZ_CP022900.1_2088113_2088332_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|225aa|down_0|NZ_CP022900.1_2088504_2089179_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|391aa|down_1|NZ_CP022900.1_2089192_2090365_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|539aa|down_2|NZ_CP022900.1_2090433_2092050_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_3|NZ_CP022900.1_2092125_2092410_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_4|NZ_CP022900.1_2092584_2093328_+	pfam02517, Abi, CAAX protease self-immunity	NA|405aa|down_5|NZ_CP022900.1_2093352_2094567_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_6|NZ_CP022900.1_2094763_2095390_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|45aa|down_7|NZ_CP022900.1_2097137_2097272_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_8|NZ_CP022900.1_2097507_2098071_+	smart00793, AgrB, Accessory gene regulator B	NA|47aa|down_9|NZ_CP022900.1_2098074_2098215_+	smart00794, AgrD, Staphylococcal AgrD protein
GCF_003354625.1_ASM335462v1	NZ_CP022900	Staphylococcus aureus strain 468 chromosome, complete genome	8	2238137-2238338	1	PILER-CR	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	TCCTTGGTTGGCAGGTGCAGCTGGATGTGCTGTA	34	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|35aa|up_8|NZ_CP022900.1_2219553_2219658_-,NA|53aa|up_7|NZ_CP022900.1_2220337_2220496_+,NA	NA|549aa|up_9|NZ_CP022900.1_2217481_2219128_+	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|35aa|up_8|NZ_CP022900.1_2219553_2219658_-	NA	NA|53aa|up_7|NZ_CP022900.1_2220337_2220496_+	NA	NA|286aa|up_6|NZ_CP022900.1_2221154_2222012_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP022900.1_2222079_2222862_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP022900.1_2223093_2224899_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP022900.1_2225579_2227118_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP022900.1_2227152_2229285_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP022900.1_2229296_2229731_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP022900.1_2229730_2230837_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP022900.1_2238826_2240182_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP022900.1_2240208_2241141_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP022900.1_2241142_2241952_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP022900.1_2242141_2243050_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP022900.1_2249267_2250332_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|158aa|down_5|NZ_CP022900.1_2252111_2252585_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_6|NZ_CP022900.1_2252706_2254050_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_7|NZ_CP022900.1_2254227_2254911_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_8|NZ_CP022900.1_2254929_2256117_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	NA|172aa|down_9|NZ_CP022900.1_2256160_2256676_-	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase
GCF_003354625.1_ASM335462v1	NZ_CP022900	Staphylococcus aureus strain 468 chromosome, complete genome	9	2296670-2296795	7	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	CCTCTTTACTCGAAAGCTCACAAAACTCTTGATATCA	37	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|56aa|up_8|NZ_CP022900.1_2287076_2287244_+,NA|61aa|up_1|NZ_CP022900.1_2295592_2295775_-,NA	NA|139aa|up_9|NZ_CP022900.1_2286417_2286834_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|56aa|up_8|NZ_CP022900.1_2287076_2287244_+	NA	NA|809aa|up_7|NZ_CP022900.1_2287240_2289667_+	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	NA|285aa|up_6|NZ_CP022900.1_2289726_2290581_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|272aa|up_5|NZ_CP022900.1_2290791_2291607_-	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|142aa|up_4|NZ_CP022900.1_2291901_2292327_+	pfam03642, MAP, MAP domain	NA|235aa|up_3|NZ_CP022900.1_2292717_2293422_-	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|555aa|up_2|NZ_CP022900.1_2293458_2295123_-	PRK08617, PRK08617, acetolactate synthase AlsS	NA|61aa|up_1|NZ_CP022900.1_2295592_2295775_-	NA	NA|60aa|up_0|NZ_CP022900.1_2296424_2296604_-	PRK09775, PRK09775, type II toxin-antitoxin system HipA family toxin YjjJ	NA|479aa|down_0|NZ_CP022900.1_2296852_2298289_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|133aa|down_1|NZ_CP022900.1_2298637_2299036_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_2|NZ_CP022900.1_2299049_2299487_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|265aa|down_3|NZ_CP022900.1_2299735_2300530_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|269aa|down_4|NZ_CP022900.1_2300534_2301341_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|287aa|down_5|NZ_CP022900.1_2301330_2302191_-	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|270aa|down_6|NZ_CP022900.1_2302187_2302997_-	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|523aa|down_7|NZ_CP022900.1_2303372_2304940_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|123aa|down_8|NZ_CP022900.1_2305192_2305561_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|315aa|down_9|NZ_CP022900.1_2305577_2306522_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional
GCF_003354625.1_ASM335462v1	NZ_CP022900	Staphylococcus aureus strain 468 chromosome, complete genome	10	2336677-2336757	8	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	6	2336702-2336732|2336702-2336732|2336702-2336732|2336702-2336732|2336702-2336732|2336702-2336732	NZ_CP022900.1_1066219-1066249|NZ_CP022900.1_1640329-1640359|NZ_CP022900.1_819996-820026|NZ_CP022900.1_869295-869265|NZ_CP022900.1_914125-914095|NZ_CP022900.1_2011032-2011062	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|55aa|up_9|NZ_CP022900.1_2327206_2327371_+,NA|106aa|up_8|NZ_CP022900.1_2327615_2327933_+,NA|84aa|up_5|NZ_CP022900.1_2333057_2333309_+,NA|57aa|up_0|NZ_CP022900.1_2336449_2336620_+,NA	NA|55aa|up_9|NZ_CP022900.1_2327206_2327371_+	NA	NA|106aa|up_8|NZ_CP022900.1_2327615_2327933_+	NA	NA|1056aa|up_7|NZ_CP022900.1_2328119_2331287_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP022900.1_2331403_2332669_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP022900.1_2333057_2333309_+	NA	NA|255aa|up_4|NZ_CP022900.1_2333300_2334065_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP022900.1_2334227_2334668_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP022900.1_2334660_2335872_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP022900.1_2335973_2336324_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP022900.1_2336449_2336620_+	NA	NA|341aa|down_0|NZ_CP022900.1_2336900_2337923_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP022900.1_2337942_2338542_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP022900.1_2338548_2338782_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP022900.1_2338787_2339234_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP022900.1_2339247_2339733_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP022900.1_2339729_2340989_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP022900.1_2341051_2341546_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP022900.1_2341547_2342054_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP022900.1_2342082_2343087_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP022900.1_2343254_2343860_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
